Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15875

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,446,420	-		DZA65_RS15865	0.69	+0.2
3,446,422	+		DZA65_RS15865	0.69	-0.7
3,446,422	+		DZA65_RS15865	0.69	-0.1
3,446,422	+		DZA65_RS15865	0.69	+1.4
3,446,422	+		DZA65_RS15865	0.69	+0.1
3,446,422	+		DZA65_RS15865	0.69	-0.0
3,446,471	+		DZA65_RS15865	0.76	-0.1
3,446,471	+		DZA65_RS15865	0.76	-0.2
3,446,471	+		DZA65_RS15865	0.76	+2.6
3,446,471	+		DZA65_RS15865	0.76	-1.4
3,446,471	+		DZA65_RS15865	0.76	-1.5
3,446,471	+		DZA65_RS15865	0.76	+0.6
3,446,471	+		DZA65_RS15865	0.76	+0.2
3,446,471	+		DZA65_RS15865	0.76	-0.9
3,446,471	+		DZA65_RS15865	0.76	+1.0
3,446,471	+		DZA65_RS15865	0.76	+0.2
3,446,472	-		DZA65_RS15865	0.76	-1.8
3,446,472	-		DZA65_RS15865	0.76	-0.7
3,446,472	-		DZA65_RS15865	0.76	+0.7
3,446,472	-		DZA65_RS15865	0.76	-0.2
3,446,472	-		DZA65_RS15865	0.76	-1.4
3,446,472	-		DZA65_RS15865	0.76	+0.7
3,446,472	-		DZA65_RS15865	0.76	+0.4
3,446,472	-		DZA65_RS15865	0.76	-0.3
3,446,472	-		DZA65_RS15865	0.76	+1.2
3,446,473	+		DZA65_RS15865	0.76	-0.3
3,446,473	+		DZA65_RS15865	0.76	-1.5
3,446,473	+		DZA65_RS15865	0.76	+1.3
3,446,473	+		DZA65_RS15865	0.76	-0.4
3,446,473	+		DZA65_RS15865	0.76	-0.0
3,446,473	+		DZA65_RS15865	0.76	+1.7
3,446,473	+		DZA65_RS15865	0.76	+0.5
3,446,473	+		DZA65_RS15865	0.76	-3.0
3,446,473	+		DZA65_RS15865	0.76	+1.5
3,446,473	+		DZA65_RS15865	0.76	-3.2
3,446,473	+		DZA65_RS15865	0.76	-0.6
3,446,473	+		DZA65_RS15865	0.76	-0.3
3,446,473	+		DZA65_RS15865	0.76	+0.7
3,446,473	+		DZA65_RS15865	0.76	-0.0
3,446,474	-		DZA65_RS15865	0.76	+1.3
3,446,474	-		DZA65_RS15865	0.76	+0.1
3,446,474	-		DZA65_RS15865	0.76	-0.7
3,446,474	-		DZA65_RS15865	0.76	-0.9
3,446,474	-		DZA65_RS15865	0.76	-1.6
3,446,474	-		DZA65_RS15865	0.76	+0.8
3,446,474	-		DZA65_RS15865	0.76	-0.9
3,446,474	-		DZA65_RS15865	0.76	+0.7
3,446,474	-		DZA65_RS15865	0.76	-1.1
3,446,474	-		DZA65_RS15865	0.76	-2.1
3,446,474	-		DZA65_RS15865	0.76	+0.3
3,446,474	-		DZA65_RS15865	0.76	+0.1
3,446,505	-		DZA65_RS15865	0.81	-0.8
3,446,505	-		DZA65_RS15865	0.81	+0.3
3,446,601	+				-1.3
3,446,602	-				+0.6
3,446,662	+				-0.1
3,446,662	+				+0.0
3,446,662	+				-0.9
3,446,663	-				+0.1
3,446,670	+				+0.9
3,446,671	-				+0.1
3,446,671	-				+3.7
3,446,736	+		DZA65_RS15870	0.13	-0.3
3,446,736	+		DZA65_RS15870	0.13	+1.7
3,446,736	+		DZA65_RS15870	0.13	+0.1
3,446,736	+		DZA65_RS15870	0.13	-0.8
3,446,736	+		DZA65_RS15870	0.13	-1.1
3,446,737	-		DZA65_RS15870	0.14	+0.9
3,446,737	-		DZA65_RS15870	0.14	-0.7
3,446,737	-		DZA65_RS15870	0.14	-1.6
3,446,757	+		DZA65_RS15870	0.16	+0.7
3,446,769	+		DZA65_RS15870	0.18	-2.3
3,446,769	+		DZA65_RS15870	0.18	+0.6
3,446,769	+		DZA65_RS15870	0.18	+0.1
3,446,769	+		DZA65_RS15870	0.18	+1.9
3,446,770	-		DZA65_RS15870	0.18	+0.2
3,446,977	+		DZA65_RS15870	0.47	-1.3
3,446,978	-		DZA65_RS15870	0.47	-1.1
3,446,981	+		DZA65_RS15870	0.47	-0.7
3,446,981	+		DZA65_RS15870	0.47	-1.1
3,447,003	+		DZA65_RS15870	0.50	+0.8
3,447,004	-		DZA65_RS15870	0.50	-1.1
3,447,004	-		DZA65_RS15870	0.50	-1.1
3,447,004	-		DZA65_RS15870	0.50	-0.8
3,447,019	-		DZA65_RS15870	0.53	-1.1
3,447,077	-		DZA65_RS15870	0.61	+0.8
3,447,135	+		DZA65_RS15870	0.69	+0.6
3,447,135	+		DZA65_RS15870	0.69	+1.7
3,447,135	+		DZA65_RS15870	0.69	+0.4
3,447,136	-		DZA65_RS15870	0.69	-0.0
3,447,136	-		DZA65_RS15870	0.69	-0.8
3,447,136	-		DZA65_RS15870	0.69	+0.4
3,447,144	+		DZA65_RS15870	0.70	-1.0
3,447,144	+		DZA65_RS15870	0.70	+0.1
3,447,144	+		DZA65_RS15870	0.70	-1.1
3,447,145	-		DZA65_RS15870	0.70	-0.3
3,447,145	-		DZA65_RS15870	0.70	+1.8
3,447,145	-		DZA65_RS15870	0.70	-1.1
3,447,145	-		DZA65_RS15870	0.70	+0.1
3,447,148	+		DZA65_RS15870	0.70	+0.2
3,447,148	+		DZA65_RS15870	0.70	+2.3
3,447,148	+		DZA65_RS15870	0.70	+1.1
3,447,148	+		DZA65_RS15870	0.70	+0.5
3,447,148	+		DZA65_RS15870	0.70	-3.0
3,447,148	+		DZA65_RS15870	0.70	+1.1
3,447,149	-		DZA65_RS15870	0.71	+1.6
3,447,149	-		DZA65_RS15870	0.71	+0.3
3,447,149	-		DZA65_RS15870	0.71	-1.9
3,447,149	-		DZA65_RS15870	0.71	-0.2
3,447,186	+		DZA65_RS15870	0.76	+0.5
3,447,186	+		DZA65_RS15870	0.76	-0.9
3,447,186	+		DZA65_RS15870	0.76	+0.1
3,447,186	+		DZA65_RS15870	0.76	+0.6
3,447,186	+		DZA65_RS15870	0.76	-0.3
3,447,186	+		DZA65_RS15870	0.76	-0.6
3,447,186	+		DZA65_RS15870	0.76	+0.5
3,447,187	-		DZA65_RS15870	0.76	-0.8
3,447,187	-		DZA65_RS15870	0.76	-0.6
3,447,187	-		DZA65_RS15870	0.76	+1.3
3,447,187	-		DZA65_RS15870	0.76	-1.1
3,447,187	-		DZA65_RS15870	0.76	-0.3
3,447,187	-		DZA65_RS15870	0.76	+0.0
3,447,347	+				+0.7
3,447,347	+				-0.9
3,447,347	+				-0.5
3,447,361	+				+0.1
3,447,361	+				+0.1
3,447,361	+				+0.5
3,447,362	-				+1.3
3,447,667	-		DZA65_RS15875	0.34	-1.9
3,447,696	+		DZA65_RS15875	0.37	-0.4
3,447,696	+		DZA65_RS15875	0.37	-0.1
3,447,696	+		DZA65_RS15875	0.37	-0.9
3,447,696	+		DZA65_RS15875	0.37	-0.3
3,447,697	-		DZA65_RS15875	0.37	-0.8
3,447,697	-		DZA65_RS15875	0.37	+0.4
3,447,697	-		DZA65_RS15875	0.37	-0.1
3,447,697	-		DZA65_RS15875	0.37	-0.4
3,447,697	-		DZA65_RS15875	0.37	-0.1
3,447,697	-		DZA65_RS15875	0.37	+0.2
3,447,697	-		DZA65_RS15875	0.37	-0.1
3,447,697	-		DZA65_RS15875	0.37	-0.7
3,447,697	-		DZA65_RS15875	0.37	+1.5
3,447,715	+		DZA65_RS15875	0.39	+1.7
3,447,715	+		DZA65_RS15875	0.39	+1.2
3,447,715	+		DZA65_RS15875	0.39	+0.7
3,447,715	+		DZA65_RS15875	0.39	-0.6
3,447,715	+		DZA65_RS15875	0.39	+0.7
3,447,716	-		DZA65_RS15875	0.40	+0.3
3,447,716	-		DZA65_RS15875	0.40	+0.0
3,447,716	-		DZA65_RS15875	0.40	-0.1
3,447,716	-		DZA65_RS15875	0.40	-1.9
3,447,716	-		DZA65_RS15875	0.40	-1.0
3,447,716	-		DZA65_RS15875	0.40	-0.1
3,447,717	+		DZA65_RS15875	0.40	+1.2
3,447,717	+		DZA65_RS15875	0.40	+0.1
3,447,717	+		DZA65_RS15875	0.40	+1.7
3,447,718	-		DZA65_RS15875	0.40	+0.0
3,447,718	-		DZA65_RS15875	0.40	+1.7
3,447,787	+		DZA65_RS15875	0.48	-0.9
3,447,814	+		DZA65_RS15875	0.51	+0.1
3,447,815	-		DZA65_RS15875	0.51	-0.7
3,447,815	-		DZA65_RS15875	0.51	-0.5
3,447,827	-		DZA65_RS15875	0.52	+0.6
3,447,866	-		DZA65_RS15875	0.57	+1.3
3,447,868	+		DZA65_RS15875	0.57	-0.3
3,447,868	+		DZA65_RS15875	0.57	-0.7
3,447,868	+		DZA65_RS15875	0.57	+0.9
3,447,869	-		DZA65_RS15875	0.57	+1.0
3,447,869	-		DZA65_RS15875	0.57	-0.0
3,447,869	-		DZA65_RS15875	0.57	-1.1
3,447,869	-		DZA65_RS15875	0.57	+1.5
3,447,891	+		DZA65_RS15875	0.60	+0.7
3,447,891	+		DZA65_RS15875	0.60	+0.3
3,447,892	-		DZA65_RS15875	0.60	+0.7
3,447,892	-		DZA65_RS15875	0.60	+0.7
3,447,892	-		DZA65_RS15875	0.60	+0.3
3,447,919	+		DZA65_RS15875	0.63	+0.0
3,447,920	-		DZA65_RS15875	0.63	+0.4
3,447,920	-		DZA65_RS15875	0.63	+0.0
3,447,932	-		DZA65_RS15875	0.65	-0.7
3,447,975	-		DZA65_RS15875	0.70	+1.6
3,448,004	+		DZA65_RS15875	0.73	+1.7
3,448,004	+		DZA65_RS15875	0.73	-0.6
3,448,110	+		DZA65_RS15875	0.85	-0.6
3,448,110	+		DZA65_RS15875	0.85	-1.0
3,448,110	+		DZA65_RS15875	0.85	-0.6
3,448,129	+		DZA65_RS15875	0.88	+0.2
3,448,196	+				-2.0
3,448,196	+				-0.4
3,448,196	+				-1.1
3,448,196	+				+2.6
3,448,196	+				-0.9
3,448,196	+				+1.0
3,448,197	-				+0.5
3,448,197	-				+0.7
3,448,197	-				-0.1
3,448,197	-				+0.9
3,448,197	-				-0.9
3,448,197	-				+0.1
3,448,197	-				-1.3
3,448,252	+				-2.1
3,448,268	+				+0.7
3,448,274	+				-0.2
3,448,275	-				-2.1
3,448,287	-				-0.7
3,448,290	+				-1.9
3,448,311	+				-0.5
3,448,312	-				+0.1
3,448,316	+				-0.6
3,448,316	+				-0.3
3,448,317	-				+0.7
3,448,328	+				-1.6
3,448,328	+				-1.3
3,448,328	+				+1.5
3,448,328	+				+0.1
3,448,328	+				-0.3
3,448,328	+				+0.4
3,448,328	+				+1.3
3,448,328	+				+0.5
3,448,328	+				+1.0
3,448,329	-				+0.7
3,448,329	-				+0.1
3,448,329	-				-0.4
3,448,445	+				+0.1
3,448,445	+				-0.0
3,448,465	+				+0.1
3,448,465	+				-0.3
3,448,465	+				-1.3
3,448,465	+				+0.7
3,448,465	+				-0.1
3,448,465	+				-1.4
3,448,465	+				-0.1
3,448,465	+				-0.4
3,448,465	+				-1.3
3,448,465	+				+2.7
3,448,465	+				-0.9
3,448,465	+				+0.2
3,448,466	-				-0.3
3,448,466	-				-0.9
3,448,466	-				-0.3
3,448,466	-				-0.4
3,448,466	-				+2.5
3,448,466	-				-0.3
3,448,466	-				+0.6
3,448,466	-				+0.3
3,448,466	-				+0.1
3,448,466	-				+0.2
3,448,466	-				+0.9
3,448,466	-				+0.7
3,448,466	-				-1.3
3,448,610	+		DZA65_RS15880	0.25	+2.1
3,448,610	+		DZA65_RS15880	0.25	-0.7
3,448,610	+		DZA65_RS15880	0.25	-0.5
3,448,611	-		DZA65_RS15880	0.25	-0.1
3,448,614	+		DZA65_RS15880	0.25	+0.7
3,448,614	+		DZA65_RS15880	0.25	-1.4
3,448,614	+		DZA65_RS15880	0.25	+0.9
3,448,615	-		DZA65_RS15880	0.26	+3.0
3,448,615	-		DZA65_RS15880	0.26	-0.3
3,448,615	-		DZA65_RS15880	0.26	+0.0
3,448,615	-		DZA65_RS15880	0.26	-0.3
3,448,615	-		DZA65_RS15880	0.26	-0.9
3,448,619	+		DZA65_RS15880	0.26	-0.4
3,448,619	+		DZA65_RS15880	0.26	-0.7
3,448,619	+		DZA65_RS15880	0.26	+0.7
3,448,619	+		DZA65_RS15880	0.26	+1.0
3,448,620	-		DZA65_RS15880	0.26	-0.5
3,448,620	-		DZA65_RS15880	0.26	+0.7
3,448,652	-		DZA65_RS15880	0.32	+0.0
3,448,702	+		DZA65_RS15880	0.41	-0.7
3,448,703	-		DZA65_RS15880	0.42	-0.6
3,448,703	-		DZA65_RS15880	0.42	+0.5
3,448,854	-		DZA65_RS15880	0.69	-1.0
3,448,854	-		DZA65_RS15880	0.69	-0.9
3,448,854	-		DZA65_RS15880	0.69	+0.7
3,449,011	+				-1.0
3,449,012	-				-0.1
3,449,012	-				-0.2
3,449,012	-				-1.2
3,449,012	-				+0.3
3,449,012	-				-1.6
3,449,015	+				-1.7
3,449,015	+				+1.3
3,449,015	+				+0.7
3,449,015	+				-1.0
3,449,015	+				+0.4
3,449,015	+				-1.9
3,449,015	+				-0.7
3,449,015	+				+0.0
3,449,015	+				+0.7
3,449,015	+				-1.7
3,449,015	+				-0.9
3,449,015	+				+0.0
3,449,015	+				-1.4
3,449,015	+				+0.1
3,449,015	+				-1.5
3,449,015	+				+1.9
3,449,015	+				-0.9
3,449,015	+				-0.5
3,449,015	+				+0.4
3,449,015	+				-1.1
3,449,016	-				-0.3
3,449,016	-				-0.3
3,449,016	-				+0.7
3,449,016	-				-1.2
3,449,016	-				-0.3
3,449,016	-				+0.0
3,449,016	-				+0.8
3,449,016	-				-1.1
3,449,016	-				-1.2
3,449,016	-				-0.9
3,449,016	-				+1.3
3,449,016	-				-0.4
3,449,016	-				+0.1
3,449,016	-				+0.4
3,449,016	-				-0.3
3,449,016	-				+0.4
3,449,016	-				-0.4
3,449,016	-				+0.7
3,449,016	-				+1.1
3,449,058	+				-1.7
3,449,176	+		DZA65_RS15885	0.11	-0.6
3,449,176	+		DZA65_RS15885	0.11	-1.2
3,449,176	+		DZA65_RS15885	0.11	+1.0
3,449,176	+		DZA65_RS15885	0.11	-0.6
3,449,201	-		DZA65_RS15885	0.13	-0.3