Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15830

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,437,136	-				-0.6
3,437,164	+				+1.3
3,437,164	+				-0.7
3,437,190	+				-0.2
3,437,190	+				+1.3
3,437,190	+				+1.3
3,437,190	+				-0.6
3,437,190	+				+0.2
3,437,190	+				-0.2
3,437,190	+				-0.7
3,437,190	+				-0.3
3,437,191	-				-0.1
3,437,191	-				-0.0
3,437,191	-				+0.5
3,437,191	-				+0.6
3,437,191	-				+0.2
3,437,191	-				-1.5
3,437,191	-				-0.1
3,437,191	-				+0.1
3,437,191	-				-1.5
3,437,210	+				+0.3
3,437,210	+				+1.0
3,437,210	+				-1.4
3,437,210	+				+0.1
3,437,211	-				-1.0
3,437,211	-				-1.3
3,437,214	+				-0.6
3,437,214	+				-0.7
3,437,214	+				-2.9
3,437,214	+				+1.0
3,437,215	-				-0.9
3,437,215	-				-2.1
3,437,215	-				-0.3
3,437,215	-				-0.3
3,437,215	-				-0.1
3,437,215	-				-1.2
3,437,233	+				-2.4
3,437,233	+				+0.3
3,437,237	+				-1.1
3,437,237	+				-0.4
3,437,237	+				-0.0
3,437,237	+				-1.2
3,437,237	+				+0.4
3,437,237	+				-1.3
3,437,237	+				+1.3
3,437,238	-				-1.6
3,437,238	-				-0.3
3,437,238	-				-0.1
3,437,297	+				-0.2
3,437,297	+				-0.6
3,437,304	+		DZA65_RS15825	0.11	+0.5
3,437,305	-		DZA65_RS15825	0.11	-1.4
3,437,510	-		DZA65_RS15825	0.40	+0.8
3,437,555	+		DZA65_RS15825	0.46	+0.7
3,437,555	+		DZA65_RS15825	0.46	-0.7
3,437,555	+		DZA65_RS15825	0.46	-1.6
3,437,555	+		DZA65_RS15825	0.46	+0.7
3,437,556	-		DZA65_RS15825	0.47	+0.1
3,437,556	-		DZA65_RS15825	0.47	-1.6
3,437,631	+		DZA65_RS15825	0.57	+2.3
3,437,631	+		DZA65_RS15825	0.57	-0.4
3,437,631	+		DZA65_RS15825	0.57	-1.8
3,437,631	+		DZA65_RS15825	0.57	-0.6
3,437,631	+		DZA65_RS15825	0.57	+1.2
3,437,632	-		DZA65_RS15825	0.57	+0.1
3,437,632	-		DZA65_RS15825	0.57	+0.1
3,437,632	-		DZA65_RS15825	0.57	-0.4
3,437,682	+		DZA65_RS15825	0.64	+0.4
3,437,798	+		DZA65_RS15825	0.81	+0.7
3,437,798	+		DZA65_RS15825	0.81	+0.7
3,437,798	+		DZA65_RS15825	0.81	+1.7
3,437,798	+		DZA65_RS15825	0.81	+0.6
3,437,798	+		DZA65_RS15825	0.81	+0.8
3,437,798	+		DZA65_RS15825	0.81	-0.1
3,437,799	-		DZA65_RS15825	0.81	-0.3
3,437,799	-		DZA65_RS15825	0.81	+0.9
3,437,799	-		DZA65_RS15825	0.81	-0.4
3,437,799	-		DZA65_RS15825	0.81	+0.5
3,437,799	-		DZA65_RS15825	0.81	+0.5
3,437,799	-		DZA65_RS15825	0.81	+0.1
3,437,799	-		DZA65_RS15825	0.81	+2.0
3,437,799	-		DZA65_RS15825	0.81	-2.5
3,437,799	-		DZA65_RS15825	0.81	-1.3
3,437,817	+		DZA65_RS15825	0.84	-2.3
3,437,930	+				+1.5
3,437,931	-				-1.6
3,438,035	+				-0.3
3,438,042	-				-1.3
3,438,681	+		DZA65_RS15830	0.37	-0.4
3,438,681	+		DZA65_RS15830	0.37	-2.3
3,438,681	+		DZA65_RS15830	0.37	-1.0
3,438,681	+		DZA65_RS15830	0.37	+0.7
3,438,681	+		DZA65_RS15830	0.37	+0.0
3,438,681	+				+0.3
3,438,682	-		DZA65_RS15830	0.37	-1.2
3,438,682	-		DZA65_RS15830	0.37	+0.0
3,438,682	-		DZA65_RS15830	0.37	-0.3
3,438,682	-		DZA65_RS15830	0.37	+0.4
3,438,682	-		DZA65_RS15830	0.37	+0.4
3,438,715	+		DZA65_RS15830	0.39	-1.4
3,438,749	-		DZA65_RS15830	0.41	-1.6
3,438,906	+		DZA65_RS15830	0.50	-1.6
3,439,033	+				+0.7
3,439,033	+		DZA65_RS15830	0.58	-0.3
3,439,033	+		DZA65_RS15830	0.58	-1.3
3,439,033	+		DZA65_RS15830	0.58	-0.0
3,439,033	+		DZA65_RS15830	0.58	+1.0
3,439,034	-		DZA65_RS15830	0.58	-1.6
3,439,034	-		DZA65_RS15830	0.58	-0.9
3,439,034	-		DZA65_RS15830	0.58	-2.1
3,439,034	-		DZA65_RS15830	0.58	-0.1
3,439,085	-		DZA65_RS15830	0.61	+0.2
3,439,096	+		DZA65_RS15830	0.61	+1.5
3,439,096	+		DZA65_RS15830	0.61	+0.7
3,439,096	+		DZA65_RS15830	0.61	-0.3
3,439,096	+		DZA65_RS15830	0.61	-1.6
3,439,097	-		DZA65_RS15830	0.62	-0.9
3,439,097	-				+0.1
3,439,097	-		DZA65_RS15830	0.62	-0.3
3,439,097	-		DZA65_RS15830	0.62	+1.9
3,439,098	+		DZA65_RS15830	0.62	+1.3
3,439,098	+		DZA65_RS15830	0.62	+0.1
3,439,107	+		DZA65_RS15830	0.62	+0.7
3,439,108	-		DZA65_RS15830	0.62	-0.3
3,439,258	-		DZA65_RS15830	0.71	+0.5
3,439,290	+		DZA65_RS15830	0.73	-1.5
3,439,290	+		DZA65_RS15830	0.73	-0.6
3,439,290	+		DZA65_RS15830	0.73	+0.1
3,439,290	+		DZA65_RS15830	0.73	-2.3
3,439,290	+		DZA65_RS15830	0.73	+1.9
3,439,290	+		DZA65_RS15830	0.73	+0.1
3,439,291	-				+0.7
3,439,291	-		DZA65_RS15830	0.73	-1.6
3,439,291	-		DZA65_RS15830	0.73	-0.3
3,439,291	-		DZA65_RS15830	0.73	-0.5
3,439,291	-		DZA65_RS15830	0.73	-1.5
3,439,291	-		DZA65_RS15830	0.73	+0.5
3,439,324	-		DZA65_RS15830	0.75	-0.5
3,439,324	-		DZA65_RS15830	0.75	+1.6
3,439,353	+		DZA65_RS15830	0.77	+0.3
3,439,353	+		DZA65_RS15830	0.77	-1.0
3,439,353	+		DZA65_RS15830	0.77	+1.0
3,439,354	-		DZA65_RS15830	0.77	-0.3
3,439,354	-		DZA65_RS15830	0.77	+0.3
3,439,420	+		DZA65_RS15830	0.81	-0.6
3,439,420	+		DZA65_RS15830	0.81	-0.9
3,439,421	-		DZA65_RS15830	0.81	-0.6
3,439,585	-				-0.3
3,439,585	-				+0.1
3,439,647	+				+0.5
3,439,786	+				-0.0
3,439,787	-				-0.5
3,439,787	-				+0.1
3,439,787	-				-0.5
3,439,787	-				-1.4
3,439,901	+				+1.3
3,439,901	+				-0.2
3,439,901	+				-0.8
3,439,902	-				-0.3
3,439,902	-				-0.9
3,439,902	-				-0.0
3,439,902	-				-1.5
3,439,902	-				-0.6
3,440,013	-		DZA65_RS15835	0.16	-0.9
3,440,045	-		DZA65_RS15835	0.18	-1.5
3,440,045	-		DZA65_RS15835	0.18	-0.6
3,440,045	-		DZA65_RS15835	0.18	-0.5
3,440,084	+		DZA65_RS15835	0.21	-0.3
3,440,085	-		DZA65_RS15835	0.21	-0.3
3,440,160	+		DZA65_RS15835	0.26	+0.6
3,440,421	+		DZA65_RS15835	0.42	-0.3
3,440,421	+		DZA65_RS15835	0.42	+0.1
3,440,421	+		DZA65_RS15835	0.42	+0.6
3,440,421	+		DZA65_RS15835	0.42	+0.9
3,440,421	+		DZA65_RS15835	0.42	+0.6
3,440,422	-		DZA65_RS15835	0.42	+0.3
3,440,422	-		DZA65_RS15835	0.42	+1.0
3,440,422	-		DZA65_RS15835	0.42	-0.9
3,440,422	-		DZA65_RS15835	0.42	+0.7
3,440,422	-		DZA65_RS15835	0.42	+1.7
3,440,422	-		DZA65_RS15835	0.42	+0.9
3,440,422	-		DZA65_RS15835	0.42	+2.3
3,440,471	-		DZA65_RS15835	0.46	-1.6
3,440,498	+		DZA65_RS15835	0.47	-1.7
3,440,498	+		DZA65_RS15835	0.47	-0.8
3,440,499	-		DZA65_RS15835	0.47	-0.5
3,440,499	-		DZA65_RS15835	0.47	+0.7
3,440,534	+		DZA65_RS15835	0.50	+1.4
3,440,535	-		DZA65_RS15835	0.50	+2.1
3,440,535	-		DZA65_RS15835	0.50	-0.7