Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15750

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,418,995	+		DZA65_RS15745	0.45	-1.5
3,418,995	+		DZA65_RS15745	0.45	+0.7
3,419,059	+		DZA65_RS15745	0.51	-0.1
3,419,059	+		DZA65_RS15745	0.51	-0.1
3,419,060	-		DZA65_RS15745	0.51	-3.5
3,419,060	-		DZA65_RS15745	0.51	-0.0
3,419,060	-		DZA65_RS15745	0.51	+0.4
3,419,065	+		DZA65_RS15745	0.51	-1.3
3,419,065	+		DZA65_RS15745	0.51	+0.9
3,419,065	+		DZA65_RS15745	0.51	+0.1
3,419,066	-		DZA65_RS15745	0.51	-2.1
3,419,066	-		DZA65_RS15745	0.51	-1.1
3,419,066	-		DZA65_RS15745	0.51	+0.7
3,419,066	-		DZA65_RS15745	0.51	-2.1
3,419,066	-		DZA65_RS15745	0.51	-0.9
3,419,066	-		DZA65_RS15745	0.51	+0.5
3,419,066	-		DZA65_RS15745	0.51	+1.0
3,419,066	-		DZA65_RS15745	0.51	-0.7
3,419,100	-		DZA65_RS15745	0.54	-2.3
3,419,308	+		DZA65_RS15745	0.74	+0.6
3,419,318	+		DZA65_RS15745	0.75	-0.7
3,419,326	+		DZA65_RS15745	0.76	+1.1
3,419,443	+		DZA65_RS15745	0.86	-0.1
3,419,444	-		DZA65_RS15745	0.86	+0.9
3,419,444	-		DZA65_RS15745	0.86	+0.2
3,419,444	-		DZA65_RS15745	0.86	-1.7
3,419,507	+				-1.3
3,419,507	+				-0.9
3,419,534	-				+0.1
3,419,565	+				+1.3
3,419,566	-				-0.9
3,419,757	+				-0.3
3,419,758	-				-1.6
3,419,831	+				+1.7
3,419,882	+				+0.2
3,419,887	+				+0.9
3,419,900	-				-0.2
3,420,055	-		DZA65_RS15750	0.16	+0.9
3,420,055	-		DZA65_RS15750	0.16	-0.3
3,420,085	-		DZA65_RS15750	0.18	-0.2
3,420,109	-		DZA65_RS15750	0.20	-0.9
3,420,264	+		DZA65_RS15750	0.32	+1.7
3,420,264	+		DZA65_RS15750	0.32	+0.7
3,420,267	+		DZA65_RS15750	0.32	-0.8
3,420,267	+				+0.7
3,420,267	+		DZA65_RS15750	0.32	-0.5
3,420,268	-		DZA65_RS15750	0.32	-2.0
3,420,268	-		DZA65_RS15750	0.32	-1.3
3,420,268	-		DZA65_RS15750	0.32	-0.5
3,420,268	-		DZA65_RS15750	0.32	+1.8
3,420,303	+		DZA65_RS15750	0.35	+0.3
3,420,303	+		DZA65_RS15750	0.35	-0.6
3,420,303	+		DZA65_RS15750	0.35	-0.6
3,420,304	-		DZA65_RS15750	0.35	-0.1
3,420,311	+		DZA65_RS15750	0.36	+0.7
3,420,312	-		DZA65_RS15750	0.36	+0.3
3,420,312	-		DZA65_RS15750	0.36	+1.5
3,420,343	-		DZA65_RS15750	0.38	-0.9
3,420,343	-		DZA65_RS15750	0.38	+0.2
3,420,343	-		DZA65_RS15750	0.38	-1.1
3,420,343	-		DZA65_RS15750	0.38	+0.4
3,420,343	-		DZA65_RS15750	0.38	-0.1
3,420,344	+		DZA65_RS15750	0.38	-0.7
3,420,344	+		DZA65_RS15750	0.38	+0.0
3,420,432	-		DZA65_RS15750	0.45	+0.3
3,420,441	+		DZA65_RS15750	0.46	+1.1
3,420,441	+		DZA65_RS15750	0.46	+0.1
3,420,441	+		DZA65_RS15750	0.46	-0.0
3,420,441	+		DZA65_RS15750	0.46	-2.2
3,420,442	-		DZA65_RS15750	0.46	+0.1
3,420,442	-		DZA65_RS15750	0.46	+0.3
3,420,442	-		DZA65_RS15750	0.46	-1.6
3,420,456	+		DZA65_RS15750	0.47	-1.1
3,420,555	+		DZA65_RS15750	0.55	-0.3
3,420,556	-		DZA65_RS15750	0.55	-1.5
3,420,556	-		DZA65_RS15750	0.55	-0.5
3,420,556	-		DZA65_RS15750	0.55	-0.9
3,420,602	+		DZA65_RS15750	0.59	-1.6
3,420,602	+		DZA65_RS15750	0.59	-1.3
3,420,603	-				-0.9
3,420,636	+		DZA65_RS15750	0.61	+0.3
3,420,636	+		DZA65_RS15750	0.61	+1.5
3,420,662	+		DZA65_RS15750	0.63	+1.5
3,420,662	+		DZA65_RS15750	0.63	-0.3
3,420,662	+		DZA65_RS15750	0.63	-0.3
3,420,662	+		DZA65_RS15750	0.63	-0.3
3,420,662	+		DZA65_RS15750	0.63	-0.0
3,420,662	+		DZA65_RS15750	0.63	-0.3
3,420,663	-		DZA65_RS15750	0.63	+0.3
3,420,663	-		DZA65_RS15750	0.63	+0.1
3,420,687	+		DZA65_RS15750	0.65	-0.3
3,420,861	+		DZA65_RS15750	0.79	-0.7
3,420,861	+		DZA65_RS15750	0.79	-0.2
3,420,862	-		DZA65_RS15750	0.79	-0.7
3,420,876	+		DZA65_RS15750	0.80	-1.6
3,420,877	-		DZA65_RS15750	0.80	+0.4
3,420,877	-		DZA65_RS15750	0.80	+0.4
3,420,877	-		DZA65_RS15750	0.80	-1.6
3,420,909	-		DZA65_RS15750	0.83	+1.0
3,420,909	-		DZA65_RS15750	0.83	+0.7
3,420,963	+		DZA65_RS15750	0.87	+0.7
3,420,963	+		DZA65_RS15750	0.87	-0.3
3,420,963	+		DZA65_RS15750	0.87	+0.1
3,420,964	-		DZA65_RS15750	0.87	-0.5
3,420,964	-		DZA65_RS15750	0.87	+1.2
3,421,001	+				+1.9
3,421,001	+				+0.3
3,421,001	+				-0.1
3,421,001	+				+0.7
3,421,002	-				-0.3
3,421,002	-				+0.1
3,421,026	+				+0.9
3,421,026	+				-0.9
3,421,026	+				-0.6
3,421,027	-				+0.4
3,421,027	-				-0.2
3,421,027	-				-0.6
3,421,027	-				-0.9
3,421,027	-				-1.4
3,421,027	-				-0.3
3,421,027	-				-1.1
3,421,035	+				+1.0
3,421,036	-				-1.7
3,421,138	-				-0.9
3,421,139	+				-1.3
3,421,139	+				-1.3
3,421,139	+				+0.1
3,421,139	+				+1.1
3,421,140	-				+0.4
3,421,140	-				-1.0
3,421,140	-				-1.5
3,421,140	-				-0.1
3,421,146	+				+0.5
3,421,177	+				+0.7
3,421,180	+				-1.6
3,421,181	-				-2.7
3,421,241	-				+0.6
3,421,272	-				-0.5
3,421,272	-				+0.9
3,421,329	-				-1.5
3,421,338	-		DZA65_RS15755	0.13	-0.3
3,421,362	-		DZA65_RS15755	0.20	+0.3
3,421,388	-		DZA65_RS15755	0.29	-0.1
3,421,388	-		DZA65_RS15755	0.29	+1.9
3,421,471	+		DZA65_RS15755	0.55	+1.6
3,421,471	+		DZA65_RS15755	0.55	+1.1
3,421,471	+		DZA65_RS15755	0.55	-0.0
3,421,472	-		DZA65_RS15755	0.55	+1.0
3,421,472	-		DZA65_RS15755	0.55	-0.7
3,421,493	-		DZA65_RS15755	0.62	+0.1
3,421,493	-		DZA65_RS15755	0.62	-0.1
3,421,554	-		DZA65_RS15755	0.81	-1.5
3,421,554	-		DZA65_RS15755	0.81	-0.1
3,421,554	-		DZA65_RS15755	0.81	+2.0
3,421,592	-				-1.0
3,421,592	-				-0.7
3,421,592	-				+1.5
3,421,618	+				-0.1
3,421,618	+				+0.3
3,421,619	-				+0.5
3,421,619	-				+0.3
3,421,619	-				+0.3
3,421,619	-				-0.0
3,421,619	-				+1.5
3,421,619	-				+0.7
3,421,619	-				+0.7
3,421,619	-				+0.5
3,421,619	-				+0.0
3,421,619	-				+0.9
3,421,800	+				-0.7
3,421,801	-				-1.0
3,421,801	-				-0.9
3,421,807	-				-1.4
3,421,808	+				-0.9
3,421,847	+				+0.3
3,421,847	+				-0.3
3,421,863	+				-1.2
3,421,863	+				-1.1
3,421,863	+				+1.8
3,421,863	+				-0.3
3,421,864	-				-2.3
3,421,864	-				-3.3
3,421,864	-				-1.2
3,421,864	-				+0.7
3,421,992	+		DZA65_RS15760	0.13	+0.7
3,422,006	+		DZA65_RS15760	0.14	-0.3
3,422,006	+		DZA65_RS15760	0.14	-0.1
3,422,006	+		DZA65_RS15760	0.14	+0.6
3,422,006	+		DZA65_RS15760	0.14	-0.8
3,422,007	-		DZA65_RS15760	0.14	-1.2
3,422,007	-		DZA65_RS15760	0.14	-1.1
3,422,007	-		DZA65_RS15760	0.14	-1.2
3,422,061	-		DZA65_RS15760	0.16	-0.9
3,422,075	+		DZA65_RS15760	0.17	-1.6
3,422,075	+		DZA65_RS15760	0.17	-0.7
3,422,075	+		DZA65_RS15760	0.17	-1.6
3,422,075	+		DZA65_RS15760	0.17	-1.3
3,422,076	-		DZA65_RS15760	0.17	-0.2
3,422,076	-		DZA65_RS15760	0.17	-1.6