Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15710

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,411,071	+		DZA65_RS15705	0.58	+1.1
3,411,072	-		DZA65_RS15705	0.58	+0.7
3,411,083	+		DZA65_RS15705	0.59	-0.3
3,411,084	-		DZA65_RS15705	0.59	-0.7
3,411,178	+		DZA65_RS15705	0.67	-0.6
3,411,178	+		DZA65_RS15705	0.67	-0.6
3,411,178	+		DZA65_RS15705	0.67	-0.7
3,411,178	+		DZA65_RS15705	0.67	+0.9
3,411,179	-		DZA65_RS15705	0.67	+0.6
3,411,179	-		DZA65_RS15705	0.67	-1.3
3,411,179	-		DZA65_RS15705	0.67	+0.1
3,411,179	-		DZA65_RS15705	0.67	+1.5
3,411,179	-				-0.9
3,411,309	+		DZA65_RS15705	0.77	+1.0
3,411,309	+		DZA65_RS15705	0.77	+0.7
3,411,310	-		DZA65_RS15705	0.77	+1.4
3,411,328	+		DZA65_RS15705	0.79	-2.5
3,411,329	-		DZA65_RS15705	0.79	+0.3
3,411,329	-		DZA65_RS15705	0.79	+0.0
3,411,362	+		DZA65_RS15705	0.82	-1.3
3,411,362	+		DZA65_RS15705	0.82	-0.3
3,411,374	+		DZA65_RS15705	0.83	-0.0
3,411,374	+		DZA65_RS15705	0.83	-0.3
3,411,375	-		DZA65_RS15705	0.83	-0.6
3,411,379	+		DZA65_RS15705	0.83	+0.3
3,411,379	+		DZA65_RS15705	0.83	-0.4
3,411,411	-		DZA65_RS15705	0.86	+1.1
3,411,411	-		DZA65_RS15705	0.86	-1.6
3,411,521	+				-1.6
3,411,522	-				+1.4
3,411,524	+				+0.7
3,411,524	+				+0.7
3,411,524	+				+1.1
3,411,524	+				+0.9
3,411,524	+				-0.5
3,411,525	-				+1.7
3,411,525	-				-1.9
3,411,532	+				-1.2
3,411,532	+				-0.8
3,411,533	-				-0.1
3,411,533	-				+0.7
3,411,533	-				+0.4
3,411,533	-				+0.2
3,411,587	+				-0.3
3,411,587	+				-2.6
3,411,587	+				-0.5
3,411,587	+				+0.0
3,411,587	+				-0.3
3,411,588	-				-1.0
3,411,601	+				-0.1
3,411,602	-				+0.3
3,411,663	+				+0.2
3,411,663	+				+0.0
3,411,679	+				-0.2
3,411,679	+				+0.7
3,411,679	+				-0.1
3,411,679	+				+0.2
3,411,679	+				-0.5
3,411,680	-				-0.2
3,411,680	-				-0.5
3,411,680	-				-1.6
3,411,704	-				+0.7
3,411,828	+				-0.9
3,411,835	-				+0.5
3,411,953	-				-0.8
3,411,974	+				+0.3
3,411,974	+				+0.4
3,411,974	+				+0.7
3,411,975	-				-3.3
3,411,975	-				-0.6
3,411,989	+				+0.8
3,411,990	-				-3.2
3,412,018	+				-0.4
3,412,018	+				-1.9
3,412,018	+				-0.1
3,412,019	-				+0.1
3,412,019	-				-0.4
3,412,019	-				-0.0
3,412,019	-				+0.1
3,412,019	-				+1.0
3,412,019	-				+0.1
3,412,033	+				-1.4
3,412,034	-				+1.7
3,412,099	+		DZA65_RS15710	0.11	-0.3
3,412,099	+		DZA65_RS15710	0.11	-1.6
3,412,099	+		DZA65_RS15710	0.11	-1.1
3,412,216	-		DZA65_RS15710	0.25	+0.1
3,412,216	-		DZA65_RS15710	0.25	-0.7
3,412,216	-		DZA65_RS15710	0.25	+0.3
3,412,216	-		DZA65_RS15710	0.25	+0.1
3,412,216	-		DZA65_RS15710	0.25	-0.5
3,412,216	-		DZA65_RS15710	0.25	-1.3
3,412,271	-		DZA65_RS15710	0.31	-2.0
3,412,281	+		DZA65_RS15710	0.32	-0.9
3,412,486	+		DZA65_RS15710	0.56	-0.7
3,412,486	+		DZA65_RS15710	0.56	-0.0
3,412,521	-		DZA65_RS15710	0.60	+0.1
3,412,564	+		DZA65_RS15710	0.65	+0.6
3,412,564	+		DZA65_RS15710	0.65	+0.4
3,412,564	+		DZA65_RS15710	0.65	-1.3
3,412,564	+		DZA65_RS15710	0.65	-1.3
3,412,564	+		DZA65_RS15710	0.65	-1.3
3,412,565	-		DZA65_RS15710	0.65	+0.1
3,412,565	-		DZA65_RS15710	0.65	-0.1
3,412,565	-		DZA65_RS15710	0.65	-0.6
3,412,565	-		DZA65_RS15710	0.65	-0.1
3,412,565	-		DZA65_RS15710	0.65	-0.6
3,412,584	+		DZA65_RS15710	0.67	-1.4
3,412,676	+		DZA65_RS15710	0.78	+0.9
3,412,724	+		DZA65_RS15710	0.84	+1.2
3,412,724	+		DZA65_RS15710	0.84	+0.0
3,412,724	+		DZA65_RS15710	0.84	-0.9
3,412,725	-		DZA65_RS15710	0.84	-0.0
3,412,725	-		DZA65_RS15710	0.84	-0.9
3,412,725	-		DZA65_RS15710	0.84	+0.3
3,412,725	-		DZA65_RS15710	0.84	-0.6
3,412,725	-		DZA65_RS15710	0.84	-1.1
3,412,725	-		DZA65_RS15710	0.84	-0.5
3,412,725	-		DZA65_RS15710	0.84	+0.7
3,412,725	-		DZA65_RS15710	0.84	+0.5
3,412,785	-				+0.2
3,412,831	+				-2.1
3,412,831	+				+1.7
3,412,831	+				+0.7
3,412,831	+				-0.1
3,412,831	+				+1.7
3,412,831	+				-0.6
3,412,831	+				+0.4
3,412,831	+				-1.1
3,412,831	+				-0.9
3,412,831	+				+0.1
3,412,831	+				+0.7
3,412,832	-				+0.4
3,412,832	-				-0.1
3,412,832	-				+0.5
3,412,832	-				+0.1
3,412,832	-				-1.3
3,412,832	-				-1.6
3,412,920	+				-1.0
3,412,920	+				+0.2
3,412,920	+				+0.7
3,412,921	-				+0.9
3,412,921	-				+0.5
3,412,921	-				+0.7
3,412,921	-				-0.9
3,412,921	-				-0.3
3,412,921	-				+0.3
3,412,931	+				-0.9
3,412,934	+				+1.3
3,412,934	+				-0.3
3,412,934	+				-0.1
3,412,934	+				-1.7
3,412,935	-				+1.0
3,412,935	-				-0.5
3,412,935	-				+0.7
3,412,935	-				+1.1
3,412,935	-				-0.0
3,412,935	-				-0.4
3,412,935	-				+0.3
3,412,941	-				-0.7
3,412,952	+				+0.7
3,412,955	+				+2.9
3,412,955	+				+0.9
3,412,955	+				+1.5
3,412,955	+				-0.5
3,412,955	+				+1.0
3,412,955	+				+1.1
3,412,955	+				-0.3
3,412,955	+				-0.2
3,412,955	+				+0.4
3,412,955	+				-0.7
3,412,955	+				-0.5
3,412,955	+				+0.3
3,412,956	-				+0.3
3,412,956	-				-1.5
3,412,956	-				+0.0
3,412,956	-				-0.0
3,412,956	-				-1.6
3,412,956	-				+4.7
3,412,956	-				+1.1
3,412,956	-				+0.7
3,412,956	-				+1.2
3,412,956	-				-2.3
3,412,956	-				-0.1
3,412,956	-				-0.9
3,412,956	-				+1.5
3,412,956	-				-0.4
3,412,956	-				-0.3
3,412,983	+				+1.4
3,412,984	-				+0.7
3,413,068	+				+1.4
3,413,068	+				-0.2
3,413,068	+				-0.1
3,413,144	+				-0.5
3,413,144	+				+0.1
3,413,144	+				+0.7
3,413,144	+				+0.7
3,413,144	+				-0.8
3,413,144	+				-0.9
3,413,144	+				-0.1
3,413,144	+				-1.6
3,413,144	+				+0.5
3,413,145	-				-0.2
3,413,145	-				+0.1
3,413,145	-				-0.7
3,413,145	-				+1.1
3,413,145	-				-1.3
3,413,145	-				+1.5
3,413,145	-				-1.1
3,413,145	-				+0.1
3,413,145	-				+0.2
3,413,145	-				+0.2
3,413,145	-				-1.6
3,413,145	-				+0.2
3,413,145	-				+0.4
3,413,145	-				+1.0
3,413,148	+				-0.9
3,413,148	+				-1.1
3,413,149	-				+0.2
3,413,149	-				-0.3
3,413,241	+		DZA65_RS15715	0.11	+0.9
3,413,242	-		DZA65_RS15715	0.11	-1.5
3,413,281	+		DZA65_RS15715	0.12	-0.5
3,413,335	+		DZA65_RS15715	0.14	-0.4
3,413,336	-		DZA65_RS15715	0.14	+0.4
3,413,336	-		DZA65_RS15715	0.14	-0.5
3,413,360	-		DZA65_RS15715	0.15	-1.3
3,413,386	+		DZA65_RS15715	0.17	+0.4
3,413,386	+		DZA65_RS15715	0.17	-0.3
3,413,386	+		DZA65_RS15715	0.17	-1.6
3,413,386	+		DZA65_RS15715	0.17	+1.1
3,413,386	+		DZA65_RS15715	0.17	-0.7
3,413,387	-		DZA65_RS15715	0.17	+0.0
3,413,387	-		DZA65_RS15715	0.17	-0.0
3,413,516	-				+0.7
3,413,516	-		DZA65_RS15715	0.22	-0.3
3,413,626	+		DZA65_RS15715	0.26	-0.7
3,413,626	+		DZA65_RS15715	0.26	-1.7
3,413,626	+		DZA65_RS15715	0.26	-0.8
3,413,637	+		DZA65_RS15715	0.27	+0.7
3,413,637	+		DZA65_RS15715	0.27	+0.7
3,413,652	+		DZA65_RS15715	0.27	-0.4
3,413,652	+		DZA65_RS15715	0.27	-0.4
3,413,652	+		DZA65_RS15715	0.27	-1.0
3,413,653	-		DZA65_RS15715	0.27	-0.5
3,413,692	+		DZA65_RS15715	0.29	+1.0
3,413,693	-		DZA65_RS15715	0.29	-1.4
3,413,693	-		DZA65_RS15715	0.29	+0.0
3,413,743	+		DZA65_RS15715	0.31	-0.1
3,413,743	+		DZA65_RS15715	0.31	-1.3
3,413,743	+		DZA65_RS15715	0.31	+0.2
3,413,743	+		DZA65_RS15715	0.31	+0.5
3,413,745	+		DZA65_RS15715	0.31	+0.4
3,413,745	+		DZA65_RS15715	0.31	+1.0
3,413,745	+		DZA65_RS15715	0.31	-0.5
3,413,745	+		DZA65_RS15715	0.31	+1.0
3,413,745	+		DZA65_RS15715	0.31	-0.7
3,413,745	+		DZA65_RS15715	0.31	-0.6
3,413,746	-		DZA65_RS15715	0.31	+0.3
3,413,746	-		DZA65_RS15715	0.31	-1.1
3,413,746	-		DZA65_RS15715	0.31	-0.3
3,413,746	-		DZA65_RS15715	0.31	-0.0
3,413,778	-		DZA65_RS15715	0.33	+0.6