Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15675

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,402,619	+		DZA65_RS15670	0.28	-0.5
3,402,619	+		DZA65_RS15670	0.28	-0.0
3,402,620	-		DZA65_RS15670	0.28	-2.5
3,402,678	+		DZA65_RS15670	0.33	-0.3
3,402,691	+		DZA65_RS15670	0.34	-0.3
3,402,692	-		DZA65_RS15670	0.34	-2.3
3,402,692	-		DZA65_RS15670	0.34	+1.1
3,402,706	+		DZA65_RS15670	0.35	-0.5
3,402,810	-		DZA65_RS15670	0.43	-2.0
3,402,810	-		DZA65_RS15670	0.43	+0.3
3,402,828	+		DZA65_RS15670	0.45	+0.3
3,402,829	-		DZA65_RS15670	0.45	-0.6
3,402,898	+		DZA65_RS15670	0.51	-0.7
3,402,911	+		DZA65_RS15670	0.52	-0.0
3,402,911	+		DZA65_RS15670	0.52	+0.1
3,402,940	+				+3.0
3,402,940	+		DZA65_RS15670	0.54	-0.4
3,402,940	+		DZA65_RS15670	0.54	+0.1
3,402,941	-		DZA65_RS15670	0.54	-0.9
3,402,941	-		DZA65_RS15670	0.54	-0.3
3,402,941	-		DZA65_RS15670	0.54	-0.5
3,402,981	+		DZA65_RS15670	0.57	+0.1
3,402,981	+		DZA65_RS15670	0.57	-1.5
3,402,982	-		DZA65_RS15670	0.57	-1.3
3,402,982	-		DZA65_RS15670	0.57	-1.1
3,402,982	-		DZA65_RS15670	0.57	-1.9
3,402,982	-		DZA65_RS15670	0.57	+1.5
3,402,982	-		DZA65_RS15670	0.57	+1.8
3,402,982	-		DZA65_RS15670	0.57	-0.6
3,403,032	+		DZA65_RS15670	0.61	+1.7
3,403,032	+		DZA65_RS15670	0.61	-0.6
3,403,032	+		DZA65_RS15670	0.61	+0.6
3,403,032	+		DZA65_RS15670	0.61	-1.1
3,403,093	+		DZA65_RS15670	0.66	-1.5
3,403,094	-				-0.3
3,403,094	-		DZA65_RS15670	0.67	+0.5
3,403,094	-		DZA65_RS15670	0.67	-0.8
3,403,102	-		DZA65_RS15670	0.67	+0.4
3,403,102	-		DZA65_RS15670	0.67	+0.1
3,403,102	-		DZA65_RS15670	0.67	+0.7
3,403,412	+				+0.1
3,403,412	+				-0.7
3,403,413	-				+0.5
3,403,450	+				-1.0
3,403,450	+				-0.9
3,403,489	-				+2.5
3,403,522	-				+2.3
3,403,714	+		DZA65_RS15675	0.14	+1.4
3,403,714	+		DZA65_RS15675	0.14	-1.9
3,403,714	+		DZA65_RS15675	0.14	-0.9
3,403,714	+		DZA65_RS15675	0.14	+0.7
3,403,714	+		DZA65_RS15675	0.14	+1.2
3,403,715	-		DZA65_RS15675	0.14	-0.1
3,403,715	-		DZA65_RS15675	0.14	-2.0
3,403,715	-		DZA65_RS15675	0.14	-0.6
3,403,715	-		DZA65_RS15675	0.14	+0.7
3,403,715	-		DZA65_RS15675	0.14	+0.2
3,403,751	+		DZA65_RS15675	0.16	-0.4
3,403,752	-		DZA65_RS15675	0.16	-0.9
3,403,752	-		DZA65_RS15675	0.16	-0.7
3,403,801	+		DZA65_RS15675	0.20	-1.3
3,403,801	+		DZA65_RS15675	0.20	+0.7
3,403,801	+		DZA65_RS15675	0.20	-2.3
3,403,801	+		DZA65_RS15675	0.20	+2.3
3,403,801	+		DZA65_RS15675	0.20	-2.7
3,403,801	+		DZA65_RS15675	0.20	-0.5
3,403,801	+		DZA65_RS15675	0.20	-0.3
3,403,801	+		DZA65_RS15675	0.20	-2.3
3,403,801	+		DZA65_RS15675	0.20	-0.3
3,403,801	+		DZA65_RS15675	0.20	-0.6
3,403,801	+		DZA65_RS15675	0.20	-1.0
3,403,801	+		DZA65_RS15675	0.20	-0.5
3,403,801	+		DZA65_RS15675	0.20	-0.1
3,403,801	+		DZA65_RS15675	0.20	-0.8
3,403,801	+		DZA65_RS15675	0.20	+0.7
3,403,802	-		DZA65_RS15675	0.20	-0.1
3,403,802	-		DZA65_RS15675	0.20	-0.3
3,403,802	-		DZA65_RS15675	0.20	-0.3
3,403,802	-		DZA65_RS15675	0.20	-1.2
3,403,802	-		DZA65_RS15675	0.20	+0.2
3,403,802	-		DZA65_RS15675	0.20	-0.3
3,403,802	-		DZA65_RS15675	0.20	-0.6
3,403,829	+		DZA65_RS15675	0.22	-0.0
3,403,829	+		DZA65_RS15675	0.22	+0.4
3,403,830	-		DZA65_RS15675	0.22	+0.3
3,403,934	+		DZA65_RS15675	0.29	-1.0
3,403,935	-		DZA65_RS15675	0.29	+1.4
3,404,108	+				+1.3
3,404,109	-		DZA65_RS15675	0.40	-0.9
3,404,122	+		DZA65_RS15675	0.41	-0.2
3,404,122	+		DZA65_RS15675	0.41	+3.7
3,404,123	-		DZA65_RS15675	0.41	+0.1
3,404,123	-		DZA65_RS15675	0.41	+0.5
3,404,153	+		DZA65_RS15675	0.43	+0.9
3,404,153	+		DZA65_RS15675	0.43	+1.3
3,404,153	+		DZA65_RS15675	0.43	+0.4
3,404,153	+		DZA65_RS15675	0.43	-0.4
3,404,154	-		DZA65_RS15675	0.43	+0.1
3,404,154	-		DZA65_RS15675	0.43	-0.3
3,404,189	-		DZA65_RS15675	0.46	+1.2
3,404,189	-		DZA65_RS15675	0.46	-0.3
3,404,189	-		DZA65_RS15675	0.46	+0.1
3,404,189	-		DZA65_RS15675	0.46	+0.7
3,404,261	+		DZA65_RS15675	0.50	+0.1
3,404,261	+		DZA65_RS15675	0.50	-1.3
3,404,261	+		DZA65_RS15675	0.50	-0.7
3,404,262	-		DZA65_RS15675	0.51	-0.3
3,404,262	-		DZA65_RS15675	0.51	-1.4
3,404,262	-		DZA65_RS15675	0.51	+0.1
3,404,328	-		DZA65_RS15675	0.55	+1.6
3,404,328	-		DZA65_RS15675	0.55	-2.3
3,404,359	+		DZA65_RS15675	0.57	+0.7
3,404,359	+		DZA65_RS15675	0.57	-0.3
3,404,360	-		DZA65_RS15675	0.57	-0.5
3,404,360	-		DZA65_RS15675	0.57	-1.3
3,404,543	+		DZA65_RS15675	0.69	-1.6
3,404,624	+		DZA65_RS15675	0.75	-1.2
3,404,624	+		DZA65_RS15675	0.75	-0.4
3,404,624	+		DZA65_RS15675	0.75	+1.0
3,404,625	-		DZA65_RS15675	0.75	-0.6
3,404,625	-		DZA65_RS15675	0.75	-0.0
3,404,625	-		DZA65_RS15675	0.75	-1.1
3,404,642	+		DZA65_RS15675	0.76	-1.4
3,404,643	-		DZA65_RS15675	0.76	+2.4
3,404,707	+		DZA65_RS15675	0.80	+1.0
3,404,707	+		DZA65_RS15675	0.80	-1.6
3,404,708	-		DZA65_RS15675	0.80	-0.7
3,404,708	-		DZA65_RS15675	0.80	-0.9
3,404,708	-		DZA65_RS15675	0.80	+0.4
3,404,708	-		DZA65_RS15675	0.80	-1.2
3,404,717	+		DZA65_RS15675	0.81	-0.3
3,405,019	-				-1.2
3,405,019	-				-0.9
3,405,019	-				-0.2
3,405,057	+				-0.3
3,405,057	+				-0.5
3,405,057	+				+1.7
3,405,057	+				-1.3
3,405,057	+				+1.7
3,405,057	+				+0.0
3,405,057	+				+0.3
3,405,057	+				-0.0
3,405,057	+				-0.2
3,405,058	-				-1.0
3,405,058	-				-0.2
3,405,058	-				+1.1
3,405,058	-				-1.4
3,405,058	-				-0.4
3,405,058	-				+0.5
3,405,058	-				-1.5
3,405,058	-				-0.3
3,405,058	-				+1.4
3,405,058	-				-0.3
3,405,103	+				+1.4
3,405,103	+				+0.3
3,405,103	+				-0.7
3,405,104	-				+0.7
3,405,104	-				-0.7
3,405,104	-				+1.2
3,405,104	-				-0.2
3,405,150	+				-0.1
3,405,150	+				-0.9
3,405,150	+				+0.4
3,405,150	+				+1.1
3,405,150	+				+4.0
3,405,151	-				-0.3
3,405,151	-				+0.1
3,405,151	-				-0.3
3,405,193	+				-0.6
3,405,193	+				+0.8
3,405,194	-				-0.9
3,405,223	+		DZA65_RS15680	0.10	-0.9
3,405,305	-		DZA65_RS15680	0.14	+0.2
3,405,427	+		DZA65_RS15680	0.20	+0.9
3,405,428	-		DZA65_RS15680	0.20	-1.1
3,405,428	-		DZA65_RS15680	0.20	+0.4
3,405,428	-		DZA65_RS15680	0.20	-1.3
3,405,428	-		DZA65_RS15680	0.20	-1.2
3,405,428	-		DZA65_RS15680	0.20	-1.6
3,405,428	-		DZA65_RS15680	0.20	-0.2
3,405,428	-		DZA65_RS15680	0.20	+0.3
3,405,529	+		DZA65_RS15680	0.25	+1.2
3,405,529	+		DZA65_RS15680	0.25	+0.4
3,405,529	+		DZA65_RS15680	0.25	-0.7
3,405,529	+		DZA65_RS15680	0.25	-0.7
3,405,530	-		DZA65_RS15680	0.25	+1.4
3,405,530	-		DZA65_RS15680	0.25	-1.9
3,405,530	-		DZA65_RS15680	0.25	-1.3
3,405,537	-		DZA65_RS15680	0.25	-0.1
3,405,537	-		DZA65_RS15680	0.25	-0.1
3,405,537	-		DZA65_RS15680	0.25	+0.1
3,405,537	-		DZA65_RS15680	0.25	-0.3
3,405,550	+		DZA65_RS15680	0.26	-0.0
3,405,703	+		DZA65_RS15680	0.33	+1.7
3,405,703	+		DZA65_RS15680	0.33	-1.1
3,405,703	+		DZA65_RS15680	0.33	-1.3
3,405,703	+		DZA65_RS15680	0.33	-1.1
3,405,703	+		DZA65_RS15680	0.33	-1.3
3,405,703	+		DZA65_RS15680	0.33	+0.1
3,405,703	+		DZA65_RS15680	0.33	-0.3
3,405,703	+		DZA65_RS15680	0.33	+0.3
3,405,703	+				+1.3
3,405,704	-		DZA65_RS15680	0.33	-1.1
3,405,704	-		DZA65_RS15680	0.33	+0.4
3,405,704	-		DZA65_RS15680	0.33	-2.3
3,405,704	-		DZA65_RS15680	0.33	+1.1
3,405,704	-		DZA65_RS15680	0.33	+0.3
3,405,704	-		DZA65_RS15680	0.33	+0.7
3,405,733	+		DZA65_RS15680	0.34	-1.8
3,405,733	+		DZA65_RS15680	0.34	-3.1
3,405,733	+		DZA65_RS15680	0.34	-1.6
3,405,733	+		DZA65_RS15680	0.34	-0.1
3,405,733	+		DZA65_RS15680	0.34	+0.3
3,405,734	-		DZA65_RS15680	0.34	+0.1
3,405,734	-		DZA65_RS15680	0.34	-0.1
3,405,734	-		DZA65_RS15680	0.34	-0.7
3,405,736	+		DZA65_RS15680	0.34	-1.3
3,405,737	-				+0.7
3,405,737	-		DZA65_RS15680	0.34	-1.1
3,405,765	+		DZA65_RS15680	0.36	-1.4
3,405,765	+		DZA65_RS15680	0.36	+0.7
3,405,766	-		DZA65_RS15680	0.36	-0.5
3,405,766	-		DZA65_RS15680	0.36	-0.7
3,405,971	+		DZA65_RS15680	0.45	-0.1
3,405,971	+		DZA65_RS15680	0.45	-2.9
3,405,972	-		DZA65_RS15680	0.45	+0.4
3,405,972	-		DZA65_RS15680	0.45	-0.9
3,405,972	-		DZA65_RS15680	0.45	+1.7
3,405,972	-		DZA65_RS15680	0.45	-0.0