Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15050

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,282,416	+		DZA65_RS15045	0.22	-1.0
3,282,417	-		DZA65_RS15045	0.22	+0.2
3,282,458	+		DZA65_RS15045	0.26	-0.2
3,282,498	+		DZA65_RS15045	0.29	-0.6
3,282,499	-		DZA65_RS15045	0.29	-2.0
3,282,499	-				-0.9
3,282,533	+		DZA65_RS15045	0.32	-0.2
3,282,533	+		DZA65_RS15045	0.32	-0.4
3,282,533	+		DZA65_RS15045	0.32	+0.9
3,282,534	-		DZA65_RS15045	0.32	-0.9
3,282,534	-		DZA65_RS15045	0.32	-0.2
3,282,534	-		DZA65_RS15045	0.32	+1.3
3,282,534	-		DZA65_RS15045	0.32	+0.5
3,282,534	-		DZA65_RS15045	0.32	+0.6
3,282,581	+		DZA65_RS15045	0.36	-0.1
3,282,581	+		DZA65_RS15045	0.36	+0.7
3,282,581	+		DZA65_RS15045	0.36	+0.0
3,282,581	+		DZA65_RS15045	0.36	-0.5
3,282,581	+		DZA65_RS15045	0.36	+0.3
3,282,581	+		DZA65_RS15045	0.36	+1.3
3,282,581	+		DZA65_RS15045	0.36	-2.2
3,282,581	+		DZA65_RS15045	0.36	-0.4
3,282,581	+		DZA65_RS15045	0.36	-0.5
3,282,581	+		DZA65_RS15045	0.36	-0.4
3,282,581	+		DZA65_RS15045	0.36	-1.9
3,282,581	+		DZA65_RS15045	0.36	-2.4
3,282,581	+		DZA65_RS15045	0.36	-0.4
3,282,582	-		DZA65_RS15045	0.36	+1.0
3,282,582	-		DZA65_RS15045	0.36	-0.1
3,282,582	-		DZA65_RS15045	0.36	+0.6
3,282,582	-		DZA65_RS15045	0.36	+0.3
3,282,582	-		DZA65_RS15045	0.36	-0.6
3,282,582	-		DZA65_RS15045	0.36	-0.4
3,282,716	-		DZA65_RS15045	0.47	-0.3
3,282,716	-		DZA65_RS15045	0.47	-0.5
3,282,716	-		DZA65_RS15045	0.47	-0.8
3,282,718	+		DZA65_RS15045	0.47	+0.5
3,282,718	+		DZA65_RS15045	0.47	-2.4
3,282,718	+		DZA65_RS15045	0.47	-0.6
3,282,718	+		DZA65_RS15045	0.47	+1.1
3,282,718	+		DZA65_RS15045	0.47	+0.5
3,282,719	-		DZA65_RS15045	0.47	-2.4
3,282,719	-		DZA65_RS15045	0.47	-1.1
3,282,719	-		DZA65_RS15045	0.47	-1.7
3,282,777	+		DZA65_RS15045	0.52	-0.4
3,282,778	-		DZA65_RS15045	0.52	-0.7
3,282,943	+		DZA65_RS15045	0.65	-1.4
3,282,943	+		DZA65_RS15045	0.65	-1.2
3,282,944	-		DZA65_RS15045	0.65	-0.2
3,282,944	-		DZA65_RS15045	0.65	+0.1
3,282,949	-		DZA65_RS15045	0.66	-1.1
3,282,949	-		DZA65_RS15045	0.66	+2.0
3,283,125	+		DZA65_RS15045	0.80	-0.2
3,283,126	-		DZA65_RS15045	0.80	+0.5
3,283,126	-		DZA65_RS15045	0.80	+0.6
3,283,168	+		DZA65_RS15045	0.84	-0.7
3,283,168	+		DZA65_RS15045	0.84	-0.2
3,283,168	+		DZA65_RS15045	0.84	-0.9
3,283,168	+		DZA65_RS15045	0.84	+0.4
3,283,168	+		DZA65_RS15045	0.84	+1.0
3,283,168	+		DZA65_RS15045	0.84	-2.6
3,283,168	+		DZA65_RS15045	0.84	-1.9
3,283,168	+		DZA65_RS15045	0.84	-0.9
3,283,168	+		DZA65_RS15045	0.84	+1.2
3,283,169	-		DZA65_RS15045	0.84	+0.1
3,283,169	-		DZA65_RS15045	0.84	-0.7
3,283,344	+				+0.3
3,283,344	+				-0.9
3,283,344	+				-1.1
3,283,344	+				-1.7
3,283,344	+				+0.9
3,283,344	+				-1.9
3,283,344	+				-0.9
3,283,344	+				+0.6
3,283,345	-				+0.1
3,283,345	-				-0.4
3,283,345	-				+1.4
3,283,345	-				+0.2
3,283,345	-				+0.9
3,283,362	+				+0.2
3,283,363	-				+0.1
3,283,444	+				-2.5
3,283,444	+				-0.0
3,283,444	+				-2.7
3,283,444	+				-0.1
3,283,445	-				+0.6
3,283,445	-				+2.0
3,283,446	+				+0.9
3,283,447	-				-0.9
3,283,447	-				-0.4
3,283,456	-				-0.4
3,283,575	-		DZA65_RS15050	0.16	+0.3
3,283,597	-		DZA65_RS15050	0.18	-0.2
3,283,733	+		DZA65_RS15050	0.28	-0.4
3,283,734	-				+0.6
3,283,734	-		DZA65_RS15050	0.28	-0.6
3,283,734	-		DZA65_RS15050	0.28	+0.1
3,283,744	+		DZA65_RS15050	0.29	+0.2
3,283,744	+		DZA65_RS15050	0.29	+0.6
3,283,744	+		DZA65_RS15050	0.29	-0.4
3,283,744	+		DZA65_RS15050	0.29	+1.4
3,283,744	+		DZA65_RS15050	0.29	+1.3
3,283,745	-		DZA65_RS15050	0.29	+0.4
3,283,745	-		DZA65_RS15050	0.29	+1.9
3,283,745	-		DZA65_RS15050	0.29	+0.5
3,283,745	-		DZA65_RS15050	0.29	+0.4
3,283,750	+		DZA65_RS15050	0.29	-2.2
3,283,750	+		DZA65_RS15050	0.29	-0.4
3,283,750	+		DZA65_RS15050	0.29	+1.0
3,283,750	+		DZA65_RS15050	0.29	-2.1
3,283,751	-		DZA65_RS15050	0.29	-1.4
3,283,751	-		DZA65_RS15050	0.29	-1.4
3,283,751	-		DZA65_RS15050	0.29	+0.4
3,283,751	-		DZA65_RS15050	0.29	-1.7
3,283,751	-		DZA65_RS15050	0.29	-0.6
3,283,751	-		DZA65_RS15050	0.29	-1.9
3,283,817	+		DZA65_RS15050	0.34	-0.2
3,283,818	-		DZA65_RS15050	0.34	+1.6
3,283,818	-		DZA65_RS15050	0.34	-0.2
3,283,829	-		DZA65_RS15050	0.35	+0.3
3,283,856	-		DZA65_RS15050	0.37	-0.7
3,283,888	+		DZA65_RS15050	0.39	+0.2
3,283,888	+		DZA65_RS15050	0.39	-1.3
3,283,888	+		DZA65_RS15050	0.39	+0.9
3,283,888	+		DZA65_RS15050	0.39	+0.1
3,283,889	-		DZA65_RS15050	0.39	-0.4
3,283,889	-		DZA65_RS15050	0.39	+5.4
3,283,889	-		DZA65_RS15050	0.39	-0.8
3,283,889	-		DZA65_RS15050	0.39	+0.3
3,283,889	-		DZA65_RS15050	0.39	-1.4
3,283,931	-		DZA65_RS15050	0.42	-0.8
3,283,969	+		DZA65_RS15050	0.45	+2.8
3,283,969	+		DZA65_RS15050	0.45	-0.2
3,283,969	+		DZA65_RS15050	0.45	+0.2
3,283,970	-		DZA65_RS15050	0.45	+0.6
3,283,970	-		DZA65_RS15050	0.45	+0.6
3,283,971	+		DZA65_RS15050	0.45	+0.2
3,283,972	-		DZA65_RS15050	0.45	-0.1
3,283,972	-		DZA65_RS15050	0.45	-0.7
3,283,972	-		DZA65_RS15050	0.45	+3.1
3,284,019	+		DZA65_RS15050	0.49	-0.2
3,284,019	+		DZA65_RS15050	0.49	+1.2
3,284,019	+		DZA65_RS15050	0.49	+0.6
3,284,020	-		DZA65_RS15050	0.49	+0.8
3,284,020	-		DZA65_RS15050	0.49	+0.3
3,284,020	-		DZA65_RS15050	0.49	-0.9
3,284,020	-		DZA65_RS15050	0.49	+0.5
3,284,020	-		DZA65_RS15050	0.49	+0.9
3,284,020	-		DZA65_RS15050	0.49	-1.7
3,284,020	-		DZA65_RS15050	0.49	-1.7
3,284,020	-		DZA65_RS15050	0.49	-0.3
3,284,020	-		DZA65_RS15050	0.49	+2.2
3,284,020	-		DZA65_RS15050	0.49	-1.5
3,284,020	-		DZA65_RS15050	0.49	+0.4
3,284,031	+		DZA65_RS15050	0.50	-1.4
3,284,031	+				+1.2
3,284,031	+		DZA65_RS15050	0.50	-0.9
3,284,031	+		DZA65_RS15050	0.50	-0.9
3,284,031	+		DZA65_RS15050	0.50	-0.9
3,284,032	-		DZA65_RS15050	0.50	-0.2
3,284,032	-				-0.4
3,284,032	-		DZA65_RS15050	0.50	-0.4
3,284,032	-		DZA65_RS15050	0.50	-0.9
3,284,099	-		DZA65_RS15050	0.55	+2.2
3,284,099	-		DZA65_RS15050	0.55	+1.2
3,284,119	+		DZA65_RS15050	0.56	+0.3
3,284,131	+		DZA65_RS15050	0.57	+0.6
3,284,131	+		DZA65_RS15050	0.57	-0.4
3,284,131	+		DZA65_RS15050	0.57	+0.5
3,284,131	+		DZA65_RS15050	0.57	+0.3
3,284,131	+		DZA65_RS15050	0.57	-0.1
3,284,131	+		DZA65_RS15050	0.57	+0.2
3,284,131	+		DZA65_RS15050	0.57	+0.3
3,284,131	+		DZA65_RS15050	0.57	+0.1
3,284,131	+		DZA65_RS15050	0.57	+1.1
3,284,131	+		DZA65_RS15050	0.57	+0.6
3,284,131	+		DZA65_RS15050	0.57	-0.4
3,284,131	+		DZA65_RS15050	0.57	-0.0
3,284,132	-		DZA65_RS15050	0.57	-0.4
3,284,132	-		DZA65_RS15050	0.57	-0.3
3,284,132	-		DZA65_RS15050	0.57	+1.7
3,284,132	-		DZA65_RS15050	0.57	-0.1
3,284,180	+		DZA65_RS15050	0.61	+0.3
3,284,180	+		DZA65_RS15050	0.61	+0.6
3,284,180	+		DZA65_RS15050	0.61	-0.4
3,284,181	-		DZA65_RS15050	0.61	+1.7
3,284,181	-		DZA65_RS15050	0.61	-0.7
3,284,296	+		DZA65_RS15050	0.69	+0.6
3,284,296	+		DZA65_RS15050	0.69	-0.4
3,284,297	-		DZA65_RS15050	0.69	+0.6
3,284,388	+		DZA65_RS15050	0.76	+0.6
3,284,388	+		DZA65_RS15050	0.76	+0.3
3,284,389	-		DZA65_RS15050	0.76	-1.4
3,284,437	+		DZA65_RS15050	0.79	+0.6
3,284,437	+		DZA65_RS15050	0.79	-0.7
3,284,438	-		DZA65_RS15050	0.80	-0.8
3,284,438	-		DZA65_RS15050	0.80	-0.4
3,284,465	+		DZA65_RS15050	0.82	-0.4
3,284,465	+		DZA65_RS15050	0.82	+0.6
3,284,466	-		DZA65_RS15050	0.82	+0.5
3,284,466	-		DZA65_RS15050	0.82	+0.5
3,284,466	-		DZA65_RS15050	0.82	+0.6
3,284,466	-		DZA65_RS15050	0.82	+0.1
3,284,503	+		DZA65_RS15050	0.84	-0.8
3,284,503	+		DZA65_RS15050	0.84	-0.5
3,284,504	-		DZA65_RS15050	0.84	-1.4
3,284,526	+		DZA65_RS15050	0.86	-1.7
3,284,607	+				-0.5
3,284,607	+				-0.5
3,284,607	+				+0.3
3,284,607	+				+0.5
3,284,607	+				-0.2
3,284,607	+				-0.9
3,284,608	-				+0.6
3,284,608	-				+0.9
3,284,608	-				+0.6
3,284,608	-				-0.9
3,284,608	-				+0.2
3,284,608	-				-0.2
3,284,608	-				-0.2
3,284,608	-				-1.0
3,284,613	+				-0.6
3,284,614	-				-0.5
3,284,657	+				-0.7
3,284,658	-				-0.4
3,284,696	+				-1.7
3,284,696	+				-0.1
3,284,696	+				-1.4
3,284,697	-				+0.3
3,284,697	-				-1.4
3,284,697	-				+0.4
3,284,701	+				-1.1
3,284,701	+				-0.7
3,284,701	+				-1.4
3,284,701	+				+0.1
3,284,702	-				-1.7
3,284,702	-				+1.1
3,284,702	-				+1.4
3,284,702	-				-1.2
3,284,702	-				+0.1
3,284,702	-				-2.5
3,284,762	+				-0.4
3,284,762	+				+0.1
3,284,762	+				-0.0
3,284,821	+				-0.5
3,284,876	+				-1.7
3,284,877	-				-0.9
3,284,877	-				-0.8
3,284,886	+				+0.1
3,284,886	+				-1.4
3,284,887	-				+0.1
3,285,011	+		DZA65_RS15055	0.14	+0.7
3,285,011	+		DZA65_RS15055	0.14	+0.2
3,285,012	-		DZA65_RS15055	0.14	-0.5
3,285,012	-		DZA65_RS15055	0.14	+0.1
3,285,025	+		DZA65_RS15055	0.14	+0.7
3,285,025	+		DZA65_RS15055	0.14	-0.5
3,285,092	+		DZA65_RS15055	0.17	+0.1
3,285,092	+		DZA65_RS15055	0.17	-0.9
3,285,093	-		DZA65_RS15055	0.17	-0.6
3,285,093	-		DZA65_RS15055	0.17	-0.9
3,285,093	-		DZA65_RS15055	0.17	-0.1
3,285,093	-		DZA65_RS15055	0.17	-0.9
3,285,136	-		DZA65_RS15055	0.19	+1.1
3,285,142	+		DZA65_RS15055	0.20	-0.3
3,285,143	-		DZA65_RS15055	0.20	-0.3
3,285,143	-		DZA65_RS15055	0.20	+0.1
3,285,335	+		DZA65_RS15055	0.28	-0.9
3,285,335	+		DZA65_RS15055	0.28	+1.2
3,285,335	+		DZA65_RS15055	0.28	-1.2
3,285,336	-		DZA65_RS15055	0.29	+0.5
3,285,336	-		DZA65_RS15055	0.29	-0.9
3,285,343	+		DZA65_RS15055	0.29	+1.0
3,285,343	+		DZA65_RS15055	0.29	-1.3
3,285,343	+		DZA65_RS15055	0.29	-1.7
3,285,343	+		DZA65_RS15055	0.29	+1.0
3,285,343	+		DZA65_RS15055	0.29	+1.2
3,285,343	+		DZA65_RS15055	0.29	+1.2
3,285,343	+				+2.7
3,285,343	+		DZA65_RS15055	0.29	-0.9
3,285,344	-		DZA65_RS15055	0.29	+0.3
3,285,344	-		DZA65_RS15055	0.29	+0.4
3,285,417	+		DZA65_RS15055	0.32	+0.4
3,285,501	-		DZA65_RS15055	0.36	-0.9
3,285,501	-		DZA65_RS15055	0.36	+0.1
3,285,501	-		DZA65_RS15055	0.36	-1.5
3,285,513	+		DZA65_RS15055	0.37	-0.8
3,285,514	-		DZA65_RS15055	0.37	+0.0
3,285,540	-		DZA65_RS15055	0.38	-0.3
3,285,549	+		DZA65_RS15055	0.38	+0.3
3,285,597	+		DZA65_RS15055	0.41	-2.3
3,285,597	+		DZA65_RS15055	0.41	-0.7
3,285,597	+		DZA65_RS15055	0.41	-0.9
3,285,597	+		DZA65_RS15055	0.41	-0.9
3,285,598	-		DZA65_RS15055	0.41	+0.3
3,285,598	-		DZA65_RS15055	0.41	-0.6
3,285,598	-		DZA65_RS15055	0.41	-0.6
3,285,688	+		DZA65_RS15055	0.45	-0.9
3,285,688	+				+1.7
3,285,688	+		DZA65_RS15055	0.45	+0.4
3,285,688	+		DZA65_RS15055	0.45	-1.7
3,285,689	-		DZA65_RS15055	0.45	-0.8
3,285,689	-				+1.2
3,285,689	-		DZA65_RS15055	0.45	-0.2
3,285,698	+		DZA65_RS15055	0.45	-1.9
3,285,698	+		DZA65_RS15055	0.45	-1.9
3,285,699	-		DZA65_RS15055	0.45	+0.9