Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14795

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,222,995	-		DZA65_RS14785	0.80	+1.0
3,222,995	-		DZA65_RS14785	0.80	-0.5
3,222,999	-		DZA65_RS14785	0.80	+0.6
3,222,999	-		DZA65_RS14785	0.80	+1.6
3,223,013	-		DZA65_RS14785	0.82	+1.1
3,223,113	-				+0.6
3,223,199	+				-1.1
3,223,199	+				+0.0
3,223,200	-				-0.4
3,223,204	+				+0.0
3,223,205	-				-0.1
3,223,205	-				+1.6
3,223,213	+				-0.7
3,223,213	+				-0.8
3,223,213	+				+1.6
3,223,214	-				-0.1
3,223,214	-				+0.6
3,223,290	+				+0.9
3,223,290	+				-2.2
3,223,291	-				-2.6
3,223,292	+				-0.8
3,223,293	-				+0.2
3,223,313	+		DZA65_RS14790	0.10	-0.4
3,223,344	+		DZA65_RS14790	0.14	+1.6
3,223,344	+		DZA65_RS14790	0.14	+0.9
3,223,344	+		DZA65_RS14790	0.14	-0.5
3,223,344	+		DZA65_RS14790	0.14	+0.3
3,223,344	+		DZA65_RS14790	0.14	-0.4
3,223,344	+		DZA65_RS14790	0.14	-0.5
3,223,344	+		DZA65_RS14790	0.14	-0.8
3,223,344	+		DZA65_RS14790	0.14	-0.4
3,223,344	+		DZA65_RS14790	0.14	+0.9
3,223,344	+		DZA65_RS14790	0.14	+0.4
3,223,344	+		DZA65_RS14790	0.14	+1.3
3,223,345	-		DZA65_RS14790	0.15	-0.7
3,223,345	-		DZA65_RS14790	0.15	+0.0
3,223,345	-		DZA65_RS14790	0.15	-1.0
3,223,345	-		DZA65_RS14790	0.15	-0.5
3,223,345	-		DZA65_RS14790	0.15	+0.6
3,223,345	-		DZA65_RS14790	0.15	-1.4
3,223,360	-		DZA65_RS14790	0.17	-0.4
3,223,365	+		DZA65_RS14790	0.17	+0.8
3,223,365	+		DZA65_RS14790	0.17	-0.3
3,223,365	+		DZA65_RS14790	0.17	-1.0
3,223,365	+		DZA65_RS14790	0.17	-0.7
3,223,365	+		DZA65_RS14790	0.17	-1.8
3,223,366	-		DZA65_RS14790	0.17	+0.4
3,223,366	-		DZA65_RS14790	0.17	+0.6
3,223,366	-		DZA65_RS14790	0.17	+0.6
3,223,366	-		DZA65_RS14790	0.17	-0.4
3,223,366	-		DZA65_RS14790	0.17	-0.1
3,223,366	-		DZA65_RS14790	0.17	-1.6
3,223,366	-		DZA65_RS14790	0.17	+0.8
3,223,366	-		DZA65_RS14790	0.17	-0.0
3,223,530	+		DZA65_RS14790	0.40	+0.6
3,223,530	+		DZA65_RS14790	0.40	-0.1
3,223,564	-		DZA65_RS14790	0.45	-0.0
3,223,581	-		DZA65_RS14790	0.47	-0.7
3,223,717	-		DZA65_RS14790	0.66	+0.0
3,223,764	+		DZA65_RS14790	0.72	-1.2
3,223,848	-		DZA65_RS14790	0.84	-0.0
3,223,848	-		DZA65_RS14790	0.84	-0.6
3,223,951	-				-0.8
3,223,992	+				-0.7
3,223,992	+				+0.1
3,223,993	-				+0.6
3,223,993	-				+0.2
3,224,032	+				+0.0
3,224,046	+				+0.8
3,224,046	+				+0.3
3,224,046	+				-0.8
3,224,046	+				-0.7
3,224,047	-				+1.5
3,224,047	-				-0.8
3,224,047	-				-0.2
3,224,312	-		DZA65_RS14795	0.29	-0.5
3,224,340	+		DZA65_RS14795	0.32	-0.9
3,224,340	+		DZA65_RS14795	0.32	-0.8
3,224,340	+		DZA65_RS14795	0.32	+0.0
3,224,340	+		DZA65_RS14795	0.32	-0.2
3,224,341	-		DZA65_RS14795	0.32	+1.6
3,224,341	-		DZA65_RS14795	0.32	+0.0
3,224,606	+		DZA65_RS14795	0.54	-0.4
3,224,606	+		DZA65_RS14795	0.54	-0.6
3,224,607	-		DZA65_RS14795	0.54	-0.6
3,224,607	-		DZA65_RS14795	0.54	-1.0
3,224,607	-		DZA65_RS14795	0.54	+1.3
3,224,607	-		DZA65_RS14795	0.54	-2.1
3,224,607	-		DZA65_RS14795	0.54	-0.8
3,224,656	-		DZA65_RS14795	0.58	-1.7
3,224,656	-		DZA65_RS14795	0.58	-0.5
3,224,692	-		DZA65_RS14795	0.61	-0.0
3,224,699	+		DZA65_RS14795	0.62	+0.2
3,224,699	+		DZA65_RS14795	0.62	+0.6
3,224,819	+		DZA65_RS14795	0.71	-1.0
3,225,016	+		DZA65_RS14795	0.88	-0.4
3,225,017	-		DZA65_RS14795	0.88	+0.9
3,225,017	-		DZA65_RS14795	0.88	-0.1
3,225,099	+				+0.4
3,225,099	+				+0.2
3,225,099	+				-2.2
3,225,099	+				-0.6
3,225,099	+				-0.3
3,225,100	-				-0.0
3,225,100	-				+0.6
3,225,100	-				-0.6
3,225,100	-				+0.2
3,225,100	-				+0.5
3,225,120	+				-1.7
3,225,130	+				-0.1
3,225,131	-				-0.7
3,225,131	-				-0.5
3,225,282	+				+0.3
3,225,282	+				+1.1
3,225,283	-				-1.0
3,225,283	-				+0.5
3,225,283	-				-0.1
3,225,283	-				+0.6
3,225,283	-				-2.4
3,225,283	-				-1.7
3,225,283	-				-0.8
3,225,383	-		DZA65_RS14800	0.10	-0.1
3,225,400	+		DZA65_RS14800	0.12	-0.7
3,225,400	+		DZA65_RS14800	0.12	+0.6
3,225,400	+		DZA65_RS14800	0.12	-2.0
3,225,401	-		DZA65_RS14800	0.12	-1.3
3,225,404	-		DZA65_RS14800	0.12	+0.6
3,225,404	-		DZA65_RS14800	0.12	-0.0
3,225,435	+		DZA65_RS14800	0.16	+0.5
3,225,435	+		DZA65_RS14800	0.16	+0.1
3,225,436	-		DZA65_RS14800	0.16	+1.0
3,225,436	-		DZA65_RS14800	0.16	-1.0
3,225,436	-		DZA65_RS14800	0.16	+1.2
3,225,436	-		DZA65_RS14800	0.16	+1.4
3,225,436	-		DZA65_RS14800	0.16	+1.9
3,225,436	-		DZA65_RS14800	0.16	-0.2
3,225,471	+		DZA65_RS14800	0.19	-0.3
3,225,471	+		DZA65_RS14800	0.19	-0.2
3,225,471	+		DZA65_RS14800	0.19	+0.6
3,225,472	-		DZA65_RS14800	0.19	+0.6
3,225,472	-		DZA65_RS14800	0.19	-0.4
3,225,472	-		DZA65_RS14800	0.19	-0.5
3,225,472	-		DZA65_RS14800	0.19	+1.4
3,225,472	-		DZA65_RS14800	0.19	+0.0
3,225,531	+		DZA65_RS14800	0.25	-0.4
3,225,553	+		DZA65_RS14800	0.28	+0.4
3,225,554	-		DZA65_RS14800	0.28	+0.3
3,225,554	-		DZA65_RS14800	0.28	-1.2
3,225,575	-		DZA65_RS14800	0.30	-0.9
3,225,598	+		DZA65_RS14800	0.32	+1.0
3,225,599	-		DZA65_RS14800	0.32	-1.8
3,225,677	+		DZA65_RS14800	0.40	+0.1
3,225,677	+		DZA65_RS14800	0.40	-1.7
3,225,677	+		DZA65_RS14800	0.40	-1.2
3,225,677	+		DZA65_RS14800	0.40	+0.4
3,225,677	+		DZA65_RS14800	0.40	+0.6
3,225,678	-		DZA65_RS14800	0.40	-1.7
3,225,727	+		DZA65_RS14800	0.45	-0.2
3,225,727	+		DZA65_RS14800	0.45	+0.2
3,225,728	-		DZA65_RS14800	0.45	-1.4
3,225,728	-		DZA65_RS14800	0.45	-1.0
3,225,728	-		DZA65_RS14800	0.45	+0.3
3,225,728	-		DZA65_RS14800	0.45	-0.7
3,225,784	+		DZA65_RS14800	0.51	+0.4
3,225,785	-		DZA65_RS14800	0.51	-0.4
3,225,785	-		DZA65_RS14800	0.51	-0.6
3,225,794	-		DZA65_RS14800	0.52	+1.8
3,225,794	-		DZA65_RS14800	0.52	+1.1
3,225,794	-		DZA65_RS14800	0.52	-0.8
3,225,794	-		DZA65_RS14800	0.52	+0.8
3,225,831	+		DZA65_RS14800	0.56	-0.4
3,225,831	+		DZA65_RS14800	0.56	-1.0
3,225,832	-		DZA65_RS14800	0.56	-1.7
3,225,832	-		DZA65_RS14800	0.56	-0.4
3,225,907	-		DZA65_RS14800	0.64	-0.4
3,226,009	+		DZA65_RS14800	0.74	+0.6
3,226,023	+		DZA65_RS14800	0.75	+1.4
3,226,023	+		DZA65_RS14800	0.75	+0.6
3,226,023	+		DZA65_RS14800	0.75	+3.3
3,226,023	+		DZA65_RS14800	0.75	+1.4
3,226,024	-		DZA65_RS14800	0.76	-0.9
3,226,024	-		DZA65_RS14800	0.76	+0.4
3,226,024	-		DZA65_RS14800	0.76	+0.6
3,226,024	-		DZA65_RS14800	0.76	+0.3
3,226,024	-		DZA65_RS14800	0.76	-2.6
3,226,027	+		DZA65_RS14800	0.76	-0.3
3,226,027	+		DZA65_RS14800	0.76	-0.3
3,226,027	+		DZA65_RS14800	0.76	+0.3
3,226,028	-		DZA65_RS14800	0.76	-1.4
3,226,028	-		DZA65_RS14800	0.76	-1.4
3,226,028	-		DZA65_RS14800	0.76	-0.9
3,226,030	+		DZA65_RS14800	0.76	+0.2
3,226,031	-		DZA65_RS14800	0.76	-1.3
3,226,031	-		DZA65_RS14800	0.76	-0.4
3,226,138	+		DZA65_RS14800	0.87	+0.7
3,226,145	-		DZA65_RS14800	0.88	-2.0