Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14255

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,113,101	+		DZA65_RS14250	0.27	+0.1
3,113,117	+		DZA65_RS14250	0.28	-0.8
3,113,118	-		DZA65_RS14250	0.28	+0.5
3,113,123	+		DZA65_RS14250	0.29	+0.4
3,113,125	-		DZA65_RS14250	0.29	-1.4
3,113,174	+		DZA65_RS14250	0.33	+1.0
3,113,174	+		DZA65_RS14250	0.33	+1.7
3,113,174	+		DZA65_RS14250	0.33	+1.9
3,113,175	-		DZA65_RS14250	0.33	-0.0
3,113,175	-		DZA65_RS14250	0.33	-0.3
3,113,175	-		DZA65_RS14250	0.33	-0.2
3,113,175	-		DZA65_RS14250	0.33	-0.3
3,113,183	+		DZA65_RS14250	0.34	+1.1
3,113,183	+		DZA65_RS14250	0.34	+0.6
3,113,183	+		DZA65_RS14250	0.34	-1.2
3,113,183	+		DZA65_RS14250	0.34	+0.2
3,113,184	-		DZA65_RS14250	0.34	-0.5
3,113,184	-		DZA65_RS14250	0.34	-0.3
3,113,184	-		DZA65_RS14250	0.34	-1.4
3,113,184	-		DZA65_RS14250	0.34	+0.6
3,113,184	-		DZA65_RS14250	0.34	+1.7
3,113,184	-		DZA65_RS14250	0.34	+0.4
3,113,205	+		DZA65_RS14250	0.35	+0.1
3,113,205	+		DZA65_RS14250	0.35	-1.3
3,113,205	+		DZA65_RS14250	0.35	-1.1
3,113,205	+		DZA65_RS14250	0.35	-1.9
3,113,206	-		DZA65_RS14250	0.35	+0.7
3,113,226	+		DZA65_RS14250	0.37	-0.9
3,113,226	+		DZA65_RS14250	0.37	+1.6
3,113,226	+		DZA65_RS14250	0.37	+0.7
3,113,227	-		DZA65_RS14250	0.37	-2.4
3,113,227	-		DZA65_RS14250	0.37	-0.3
3,113,227	-		DZA65_RS14250	0.37	-1.8
3,113,227	-		DZA65_RS14250	0.37	+1.0
3,113,230	+		DZA65_RS14250	0.37	-0.0
3,113,231	-		DZA65_RS14250	0.37	-1.0
3,113,248	+		DZA65_RS14250	0.39	+1.1
3,113,248	+		DZA65_RS14250	0.39	+1.0
3,113,249	-		DZA65_RS14250	0.39	+0.2
3,113,249	-		DZA65_RS14250	0.39	-0.4
3,113,249	-		DZA65_RS14250	0.39	-0.4
3,113,249	-		DZA65_RS14250	0.39	+0.1
3,113,297	+		DZA65_RS14250	0.43	-0.0
3,113,297	+		DZA65_RS14250	0.43	-1.4
3,113,297	+		DZA65_RS14250	0.43	+1.5
3,113,298	-		DZA65_RS14250	0.43	-0.9
3,113,298	-		DZA65_RS14250	0.43	-0.4
3,113,298	-		DZA65_RS14250	0.43	-3.0
3,113,298	-		DZA65_RS14250	0.43	-0.4
3,113,298	-		DZA65_RS14250	0.43	-0.2
3,113,358	+		DZA65_RS14250	0.48	-0.2
3,113,359	-		DZA65_RS14250	0.48	-0.6
3,113,373	+		DZA65_RS14250	0.49	-0.8
3,113,374	-		DZA65_RS14250	0.49	-0.4
3,113,374	-		DZA65_RS14250	0.49	-1.4
3,113,374	-		DZA65_RS14250	0.49	-1.8
3,113,474	+		DZA65_RS14250	0.57	-0.3
3,113,475	-		DZA65_RS14250	0.57	-0.2
3,113,566	+		DZA65_RS14250	0.64	+0.3
3,113,566	+		DZA65_RS14250	0.64	+0.3
3,113,593	+		DZA65_RS14250	0.66	-1.5
3,113,594	-		DZA65_RS14250	0.66	-0.4
3,113,672	+		DZA65_RS14250	0.73	+0.6
3,113,672	+		DZA65_RS14250	0.73	+1.0
3,113,672	+		DZA65_RS14250	0.73	-1.8
3,113,672	+		DZA65_RS14250	0.73	+0.7
3,113,672	+		DZA65_RS14250	0.73	-0.3
3,113,673	-		DZA65_RS14250	0.73	+0.7
3,113,673	-		DZA65_RS14250	0.73	+0.6
3,113,673	-		DZA65_RS14250	0.73	-1.9
3,113,673	-		DZA65_RS14250	0.73	-0.1
3,113,673	-		DZA65_RS14250	0.73	-1.4
3,113,673	-		DZA65_RS14250	0.73	-0.0
3,113,673	-		DZA65_RS14250	0.73	+0.2
3,113,673	-		DZA65_RS14250	0.73	-1.0
3,113,673	-		DZA65_RS14250	0.73	-2.1
3,113,673	-		DZA65_RS14250	0.73	-1.8
3,113,674	+		DZA65_RS14250	0.73	-0.2
3,113,674	+		DZA65_RS14250	0.73	-1.3
3,113,674	+		DZA65_RS14250	0.73	+0.0
3,113,675	-		DZA65_RS14250	0.73	-1.3
3,113,675	-		DZA65_RS14250	0.73	-1.0
3,113,675	-		DZA65_RS14250	0.73	+1.1
3,113,675	-		DZA65_RS14250	0.73	+2.0
3,113,675	-		DZA65_RS14250	0.73	-1.3
3,113,681	-		DZA65_RS14250	0.73	-1.0
3,113,692	+		DZA65_RS14250	0.74	+1.0
3,113,692	+		DZA65_RS14250	0.74	+1.0
3,113,692	+		DZA65_RS14250	0.74	-0.8
3,113,692	+		DZA65_RS14250	0.74	+0.7
3,113,692	+		DZA65_RS14250	0.74	+1.4
3,113,693	-		DZA65_RS14250	0.74	-0.0
3,113,693	-		DZA65_RS14250	0.74	-1.4
3,113,693	-		DZA65_RS14250	0.74	+0.8
3,113,804	+		DZA65_RS14250	0.83	-0.7
3,113,804	+		DZA65_RS14250	0.83	+0.1
3,113,804	+		DZA65_RS14250	0.83	+1.1
3,113,983	+				-0.4
3,113,983	+				-0.8
3,113,983	+				+0.1
3,113,983	+				+0.6
3,113,983	+				+1.4
3,113,984	-				+1.7
3,113,984	-				-0.6
3,113,984	-				-2.4
3,114,025	+				+0.6
3,114,025	+				-0.4
3,114,026	-				-0.0
3,114,030	+				+0.6
3,114,031	-				-0.8
3,114,036	-				+0.5
3,114,036	-				-1.4
3,114,036	-				+0.7
3,114,096	+				+0.2
3,114,096	+				+0.9
3,114,096	+				+0.1
3,114,097	-				+0.7
3,114,097	-				-0.4
3,114,097	-				+1.6
3,114,097	-				+0.2
3,114,097	-				+0.8
3,114,101	+				-0.6
3,114,101	+				-1.3
3,114,101	+				-0.3
3,114,102	-				+0.9
3,114,133	+				-1.1
3,114,134	-				-1.3
3,114,134	-				-0.8
3,114,134	-				-1.4
3,114,134	-				+0.3
3,114,244	+		DZA65_RS14255	0.16	-0.4
3,114,244	+		DZA65_RS14255	0.16	-1.6
3,114,244	+		DZA65_RS14255	0.16	-1.2
3,114,245	-		DZA65_RS14255	0.16	-1.4
3,114,245	-		DZA65_RS14255	0.16	-0.4
3,114,288	-		DZA65_RS14255	0.19	+0.2
3,114,323	+		DZA65_RS14255	0.22	+0.4
3,114,323	+		DZA65_RS14255	0.22	+0.2
3,114,323	+		DZA65_RS14255	0.22	-1.4
3,114,324	-		DZA65_RS14255	0.22	+0.6
3,114,324	-		DZA65_RS14255	0.22	+0.6
3,114,327	+		DZA65_RS14255	0.22	+1.9
3,114,327	+		DZA65_RS14255	0.22	-1.0
3,114,327	+		DZA65_RS14255	0.22	-0.3
3,114,327	+		DZA65_RS14255	0.22	-1.6
3,114,327	+		DZA65_RS14255	0.22	-0.7
3,114,327	+		DZA65_RS14255	0.22	+0.1
3,114,327	+		DZA65_RS14255	0.22	-0.4
3,114,328	-		DZA65_RS14255	0.22	+0.3
3,114,340	-		DZA65_RS14255	0.23	-0.1
3,114,340	-		DZA65_RS14255	0.23	+0.6
3,114,422	+		DZA65_RS14255	0.30	+0.6
3,114,423	-		DZA65_RS14255	0.30	-1.3
3,114,425	+		DZA65_RS14255	0.30	+0.1
3,114,426	-		DZA65_RS14255	0.30	-2.6
3,114,426	-		DZA65_RS14255	0.30	-0.4
3,114,464	-		DZA65_RS14255	0.33	+0.6
3,114,464	-		DZA65_RS14255	0.33	-1.0
3,114,467	+		DZA65_RS14255	0.33	-1.2
3,114,468	-		DZA65_RS14255	0.33	-0.5
3,114,468	-		DZA65_RS14255	0.33	-1.0
3,114,479	+		DZA65_RS14255	0.34	+0.1
3,114,479	+		DZA65_RS14255	0.34	-0.3
3,114,479	+				-0.0
3,114,480	-		DZA65_RS14255	0.34	-0.4
3,114,480	-		DZA65_RS14255	0.34	+0.6
3,114,480	-		DZA65_RS14255	0.34	-1.0
3,114,518	+		DZA65_RS14255	0.37	-1.0
3,114,519	-		DZA65_RS14255	0.37	-0.1
3,114,519	-		DZA65_RS14255	0.37	+0.1
3,114,607	+		DZA65_RS14255	0.44	-1.8
3,114,607	+		DZA65_RS14255	0.44	+1.1
3,114,608	-		DZA65_RS14255	0.44	+1.3
3,114,608	-		DZA65_RS14255	0.44	+0.4
3,114,613	+		DZA65_RS14255	0.45	+0.8
3,114,613	+		DZA65_RS14255	0.45	-0.8
3,114,613	+		DZA65_RS14255	0.45	+0.4
3,114,613	+		DZA65_RS14255	0.45	+1.6
3,114,613	+		DZA65_RS14255	0.45	-1.3
3,114,613	+		DZA65_RS14255	0.45	+1.1
3,114,613	+		DZA65_RS14255	0.45	-0.3
3,114,613	+		DZA65_RS14255	0.45	-0.7
3,114,613	+		DZA65_RS14255	0.45	-0.1
3,114,613	+		DZA65_RS14255	0.45	-1.0
3,114,613	+		DZA65_RS14255	0.45	+0.6
3,114,614	-		DZA65_RS14255	0.45	-0.1
3,114,614	-		DZA65_RS14255	0.45	-0.4
3,114,614	-		DZA65_RS14255	0.45	+0.3
3,114,614	-		DZA65_RS14255	0.45	-1.6
3,114,614	-		DZA65_RS14255	0.45	-0.4
3,114,614	-		DZA65_RS14255	0.45	-1.4
3,114,614	-		DZA65_RS14255	0.45	+0.6
3,114,614	-		DZA65_RS14255	0.45	+0.2
3,114,614	-		DZA65_RS14255	0.45	-0.2
3,114,614	-		DZA65_RS14255	0.45	-0.2
3,114,614	-		DZA65_RS14255	0.45	-1.8
3,114,614	-		DZA65_RS14255	0.45	+0.6
3,114,627	+		DZA65_RS14255	0.46	+0.6
3,114,631	-		DZA65_RS14255	0.46	+0.3
3,114,650	+		DZA65_RS14255	0.48	-0.9
3,114,650	+		DZA65_RS14255	0.48	+1.0
3,114,650	+		DZA65_RS14255	0.48	+1.4
3,114,650	+		DZA65_RS14255	0.48	+0.4
3,114,650	+		DZA65_RS14255	0.48	-0.4
3,114,650	+		DZA65_RS14255	0.48	-0.4
3,114,650	+		DZA65_RS14255	0.48	-1.3
3,114,651	-		DZA65_RS14255	0.48	-2.3
3,114,651	-		DZA65_RS14255	0.48	-0.9
3,114,651	-		DZA65_RS14255	0.48	-1.0
3,114,651	-		DZA65_RS14255	0.48	+0.6
3,114,651	-		DZA65_RS14255	0.48	+0.3
3,114,651	-		DZA65_RS14255	0.48	+0.7
3,114,700	+		DZA65_RS14255	0.52	-1.1
3,114,768	+		DZA65_RS14255	0.57	+2.0
3,114,768	+		DZA65_RS14255	0.57	+0.9
3,114,768	+		DZA65_RS14255	0.57	-1.4
3,114,768	+		DZA65_RS14255	0.57	+0.6
3,114,768	+		DZA65_RS14255	0.57	-0.1
3,114,768	+		DZA65_RS14255	0.57	-1.4
3,114,768	+		DZA65_RS14255	0.57	-2.6
3,114,768	+		DZA65_RS14255	0.57	-0.4
3,114,768	+		DZA65_RS14255	0.57	-0.4
3,114,769	-		DZA65_RS14255	0.57	+0.8
3,114,769	-		DZA65_RS14255	0.57	+0.9
3,114,769	-		DZA65_RS14255	0.57	+0.3
3,114,769	-		DZA65_RS14255	0.57	-0.7
3,114,787	-		DZA65_RS14255	0.59	+0.1
3,114,787	-		DZA65_RS14255	0.59	+0.1
3,114,801	-		DZA65_RS14255	0.60	+4.0
3,114,801	-		DZA65_RS14255	0.60	+1.1
3,114,836	+		DZA65_RS14255	0.62	-0.7
3,114,836	+		DZA65_RS14255	0.62	+0.6
3,114,848	+		DZA65_RS14255	0.63	-1.8
3,114,849	-		DZA65_RS14255	0.63	-0.1
3,114,876	-		DZA65_RS14255	0.66	-1.0
3,114,918	+		DZA65_RS14255	0.69	-0.7
3,114,919	-		DZA65_RS14255	0.69	-0.8
3,114,919	-		DZA65_RS14255	0.69	+0.5
3,114,919	-		DZA65_RS14255	0.69	-0.1
3,114,919	-		DZA65_RS14255	0.69	-0.0
3,114,919	-		DZA65_RS14255	0.69	+1.6
3,114,919	-		DZA65_RS14255	0.69	-1.0
3,114,935	+		DZA65_RS14255	0.70	-1.3
3,114,938	+		DZA65_RS14255	0.70	-0.3
3,114,938	+		DZA65_RS14255	0.70	+1.0
3,114,938	+		DZA65_RS14255	0.70	+0.5
3,114,938	+		DZA65_RS14255	0.70	+2.1
3,114,939	-		DZA65_RS14255	0.71	-0.9
3,114,939	-		DZA65_RS14255	0.71	-0.8
3,114,939	-		DZA65_RS14255	0.71	-0.4
3,114,939	-		DZA65_RS14255	0.71	-1.2
3,114,939	-		DZA65_RS14255	0.71	-0.4
3,114,939	-		DZA65_RS14255	0.71	-1.0
3,114,939	-		DZA65_RS14255	0.71	-1.4
3,114,939	-		DZA65_RS14255	0.71	-1.4
3,114,955	+		DZA65_RS14255	0.72	-0.7
3,114,956	-		DZA65_RS14255	0.72	-0.9
3,114,956	-		DZA65_RS14255	0.72	-0.3
3,114,956	-		DZA65_RS14255	0.72	+0.2
3,115,026	+		DZA65_RS14255	0.77	-1.9
3,115,027	-		DZA65_RS14255	0.78	+0.0
3,115,027	-		DZA65_RS14255	0.78	-0.8
3,115,297	-				+0.8
3,115,297	-				+0.8
3,115,308	+				-0.4
3,115,309	-				+1.1
3,115,309	-				-1.3
3,115,309	-				+0.0
3,115,311	+				+1.0
3,115,311	+				+0.2
3,115,311	+				+0.8
3,115,311	+				+0.2
3,115,312	-				-2.0
3,115,312	-				+0.1
3,115,312	-				+0.2
3,115,312	-				+0.4
3,115,312	-				+1.0
3,115,325	-				+1.6
3,115,363	+				+1.7
3,115,364	-				+0.6
3,115,364	-				-1.2
3,115,364	-				+1.3
3,115,375	+				-0.0
3,115,375	+				-0.3
3,115,375	+				+0.3
3,115,375	+				-0.4
3,115,375	+				+0.3
3,115,376	-				-1.3
3,115,376	-				-0.9
3,115,376	-				+0.1
3,115,376	-				+0.4
3,115,462	-		DZA65_RS14260	0.21	-0.2
3,115,464	-		DZA65_RS14260	0.21	+2.1
3,115,464	-		DZA65_RS14260	0.21	-0.9
3,115,520	+		DZA65_RS14260	0.28	+0.6
3,115,520	+		DZA65_RS14260	0.28	+0.6
3,115,520	+		DZA65_RS14260	0.28	-0.0
3,115,520	+		DZA65_RS14260	0.28	-0.4
3,115,520	+		DZA65_RS14260	0.28	-0.3
3,115,521	-		DZA65_RS14260	0.28	+1.6
3,115,521	-		DZA65_RS14260	0.28	+1.0
3,115,583	-		DZA65_RS14260	0.36	+0.6
3,115,599	+		DZA65_RS14260	0.38	-1.4
3,115,599	+		DZA65_RS14260	0.38	-1.9
3,115,599	+		DZA65_RS14260	0.38	+0.6
3,115,599	+		DZA65_RS14260	0.38	-0.7
3,115,599	+		DZA65_RS14260	0.38	-0.3
3,115,600	-		DZA65_RS14260	0.38	+0.3
3,115,600	-		DZA65_RS14260	0.38	-0.6
3,115,600	-		DZA65_RS14260	0.38	-0.4
3,115,615	+		DZA65_RS14260	0.40	+0.3
3,115,615	+		DZA65_RS14260	0.40	-0.6
3,115,615	+		DZA65_RS14260	0.40	-1.6
3,115,615	+		DZA65_RS14260	0.40	-1.6
3,115,615	+		DZA65_RS14260	0.40	+1.1
3,115,615	+		DZA65_RS14260	0.40	+0.4
3,115,615	+		DZA65_RS14260	0.40	+3.1
3,115,615	+		DZA65_RS14260	0.40	+1.2
3,115,615	+		DZA65_RS14260	0.40	+0.7
3,115,615	+		DZA65_RS14260	0.40	-2.8
3,115,616	-		DZA65_RS14260	0.40	-0.3
3,115,616	-		DZA65_RS14260	0.40	-0.3
3,115,616	-		DZA65_RS14260	0.40	-0.6
3,115,616	-				+2.3
3,115,616	-		DZA65_RS14260	0.40	-0.7
3,115,616	-		DZA65_RS14260	0.40	-1.4
3,115,616	-		DZA65_RS14260	0.40	+2.0
3,115,616	-		DZA65_RS14260	0.40	+0.4
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3,115,661	+		DZA65_RS14260	0.46	-2.3
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3,115,662	-		DZA65_RS14260	0.46	+0.8
3,115,754	+		DZA65_RS14260	0.57	-0.8
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3,115,754	+		DZA65_RS14260	0.57	-0.6
3,115,754	+		DZA65_RS14260	0.57	+1.1
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3,115,755	-		DZA65_RS14260	0.58	-0.3
3,115,755	-		DZA65_RS14260	0.58	+1.1
3,115,769	+		DZA65_RS14260	0.59	-0.4
3,115,769	+		DZA65_RS14260	0.59	-1.0
3,115,770	-		DZA65_RS14260	0.59	+0.6
3,115,778	+		DZA65_RS14260	0.61	-1.4
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3,115,798	+		DZA65_RS14260	0.63	-1.0
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3,115,801	-		DZA65_RS14260	0.63	+0.6
3,115,801	-				+1.6
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3,115,801	-		DZA65_RS14260	0.63	-0.6
3,115,801	-		DZA65_RS14260	0.63	+0.2
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3,115,864	+		DZA65_RS14260	0.71	+1.6
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3,115,952	-		DZA65_RS14260	0.82	+1.1
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3,115,953	+		DZA65_RS14260	0.83	+2.1
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3,115,954	-		DZA65_RS14260	0.83	-0.2
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3,115,954	-		DZA65_RS14260	0.83	+0.8
3,116,126	+				-2.0
3,116,147	+				+0.6
3,116,148	-				+0.2
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3,116,214	-		DZA65_RS14265	0.16	-0.4
3,116,214	-		DZA65_RS14265	0.16	+0.3
3,116,214	-		DZA65_RS14265	0.16	-1.8
3,116,214	-		DZA65_RS14265	0.16	+1.4
3,116,223	+		DZA65_RS14265	0.17	+0.7
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3,116,243	-		DZA65_RS14265	0.20	+0.8
3,116,243	-				-0.8
3,116,245	-		DZA65_RS14265	0.20	-0.3
3,116,245	-		DZA65_RS14265	0.20	+0.6
3,116,245	-		DZA65_RS14265	0.20	-0.1
3,116,267	-		DZA65_RS14265	0.23	+1.1
3,116,275	+		DZA65_RS14265	0.24	+0.2
3,116,275	+		DZA65_RS14265	0.24	+1.3
3,116,276	-		DZA65_RS14265	0.24	-0.3