Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13500

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,895,367	+		DZA65_RS13490	0.63	-0.8
2,895,398	+		DZA65_RS13490	0.67	-1.5
2,895,415	+		DZA65_RS13490	0.69	-1.3
2,895,415	+		DZA65_RS13490	0.69	+0.3
2,895,459	-		DZA65_RS13490	0.75	+1.1
2,895,501	+		DZA65_RS13490	0.80	+0.5
2,895,554	+		DZA65_RS13490	0.87	-0.3
2,895,555	-		DZA65_RS13490	0.87	+0.4
2,895,557	+		DZA65_RS13490	0.87	+1.3
2,895,557	+		DZA65_RS13490	0.87	-1.4
2,895,557	+		DZA65_RS13490	0.87	+3.1
2,895,557	+		DZA65_RS13490	0.87	-1.5
2,895,558	-		DZA65_RS13490	0.88	-0.2
2,895,558	-		DZA65_RS13490	0.88	+1.1
2,895,558	-		DZA65_RS13490	0.88	+1.4
2,895,558	-		DZA65_RS13490	0.88	-1.2
2,895,558	-		DZA65_RS13490	0.88	+0.6
2,895,558	-		DZA65_RS13490	0.88	-2.1
2,895,558	-		DZA65_RS13490	0.88	+0.5
2,895,558	-		DZA65_RS13490	0.88	-0.2
2,895,558	-		DZA65_RS13490	0.88	-1.3
2,895,600	+				+2.1
2,895,601	-				+0.8
2,895,601	-				+0.1
2,895,631	+				-0.2
2,895,631	+				-1.1
2,895,686	-				+1.1
2,895,688	+				+0.5
2,895,688	+				+0.3
2,895,688	+				-1.5
2,895,689	-				+0.5
2,895,828	+		DZA65_RS13495	0.31	-0.9
2,895,838	+		DZA65_RS13495	0.33	-1.2
2,895,885	+		DZA65_RS13495	0.41	+0.5
2,895,885	+		DZA65_RS13495	0.41	+0.1
2,895,885	+		DZA65_RS13495	0.41	-0.5
2,895,886	-		DZA65_RS13495	0.42	+1.9
2,895,886	-		DZA65_RS13495	0.42	+1.0
2,895,886	-		DZA65_RS13495	0.42	+0.6
2,895,886	-		DZA65_RS13495	0.42	-1.5
2,895,942	-		DZA65_RS13495	0.52	-0.1
2,895,971	+		DZA65_RS13495	0.57	-1.5
2,895,971	+		DZA65_RS13495	0.57	-0.7
2,895,971	+		DZA65_RS13495	0.57	+0.3
2,896,050	+		DZA65_RS13495	0.71	+0.7
2,896,060	-		DZA65_RS13495	0.73	-0.0
2,896,060	-		DZA65_RS13495	0.73	+0.3
2,896,080	+		DZA65_RS13495	0.77	+2.5
2,896,081	-		DZA65_RS13495	0.77	-0.6
2,896,132	+		DZA65_RS13495	0.86	-0.5
2,896,132	+		DZA65_RS13495	0.86	-0.7
2,896,132	+		DZA65_RS13495	0.86	+0.5
2,896,133	-		DZA65_RS13495	0.86	-0.7
2,896,133	-		DZA65_RS13495	0.86	+1.0
2,896,133	-		DZA65_RS13495	0.86	-0.8
2,896,133	-		DZA65_RS13495	0.86	-0.5
2,896,133	-		DZA65_RS13495	0.86	+0.2
2,896,191	+				-1.6
2,896,191	+				+1.3
2,896,191	+				-0.3
2,896,191	+				+0.5
2,896,193	+				+0.2
2,896,193	+				+0.9
2,896,193	+				-0.8
2,896,193	+				+0.7
2,896,194	-				+0.8
2,896,194	-				+1.0
2,896,194	-				-0.2
2,896,194	-				+0.4
2,896,194	-				+1.9
2,896,194	-				-0.9
2,896,194	-				-0.4
2,896,199	-				-1.1
2,896,268	+				+0.5
2,896,269	-				-0.3
2,896,328	-				+1.1
2,896,328	-				-0.7
2,896,328	-				-1.1
2,896,421	-		DZA65_RS13500	0.15	-0.5
2,896,421	-		DZA65_RS13500	0.15	+0.2
2,896,423	+		DZA65_RS13500	0.16	-1.1
2,896,423	+		DZA65_RS13500	0.16	+0.1
2,896,423	+		DZA65_RS13500	0.16	-0.6
2,896,423	+		DZA65_RS13500	0.16	+0.1
2,896,423	+		DZA65_RS13500	0.16	-0.5
2,896,423	+		DZA65_RS13500	0.16	+0.1
2,896,423	+		DZA65_RS13500	0.16	+0.9
2,896,423	+		DZA65_RS13500	0.16	-1.3
2,896,423	+		DZA65_RS13500	0.16	+0.3
2,896,423	+		DZA65_RS13500	0.16	-0.3
2,896,424	-		DZA65_RS13500	0.16	-0.7
2,896,424	-		DZA65_RS13500	0.16	-0.1
2,896,424	-		DZA65_RS13500	0.16	+0.2
2,896,424	-		DZA65_RS13500	0.16	-0.3
2,896,424	-		DZA65_RS13500	0.16	-0.8
2,896,424	-		DZA65_RS13500	0.16	+1.1
2,896,424	-		DZA65_RS13500	0.16	-0.3
2,896,424	-		DZA65_RS13500	0.16	-1.8
2,896,424	-		DZA65_RS13500	0.16	-0.5
2,896,424	-		DZA65_RS13500	0.16	-0.6
2,896,424	-		DZA65_RS13500	0.16	-1.2
2,896,424	-		DZA65_RS13500	0.16	-0.6
2,896,424	-		DZA65_RS13500	0.16	-0.3
2,896,424	-		DZA65_RS13500	0.16	-0.2
2,896,424	-		DZA65_RS13500	0.16	-0.1
2,896,427	+		DZA65_RS13500	0.16	+1.1
2,896,428	-		DZA65_RS13500	0.16	-0.7
2,896,428	-		DZA65_RS13500	0.16	+0.7
2,896,462	-		DZA65_RS13500	0.19	-1.2
2,896,534	+		DZA65_RS13500	0.27	-1.8
2,896,535	-		DZA65_RS13500	0.27	-1.1
2,896,564	+		DZA65_RS13500	0.30	+1.2
2,896,565	-		DZA65_RS13500	0.30	+0.2
2,896,699	-		DZA65_RS13500	0.43	+0.4
2,896,718	+		DZA65_RS13500	0.45	-0.4
2,896,718	+		DZA65_RS13500	0.45	-0.3
2,896,718	+		DZA65_RS13500	0.45	-1.0
2,896,719	-		DZA65_RS13500	0.45	-1.9
2,896,719	-		DZA65_RS13500	0.45	-0.3
2,896,719	-		DZA65_RS13500	0.45	-2.9
2,896,719	-		DZA65_RS13500	0.45	-1.5
2,896,719	-		DZA65_RS13500	0.45	-2.1
2,896,754	+		DZA65_RS13500	0.49	+0.8
2,896,755	-		DZA65_RS13500	0.49	-1.2
2,896,755	-		DZA65_RS13500	0.49	+0.9
2,896,786	-		DZA65_RS13500	0.52	+0.1
2,896,786	-		DZA65_RS13500	0.52	-2.5
2,896,786	-		DZA65_RS13500	0.52	-2.6
2,897,008	+		DZA65_RS13500	0.74	-0.5
2,897,095	-		DZA65_RS13500	0.83	+0.4
2,897,095	-		DZA65_RS13500	0.83	-0.7
2,897,191	+				-1.7
2,897,197	+				-1.5
2,897,198	-				-0.2
2,897,244	+				-0.2
2,897,244	+				+0.4
2,897,246	+				-0.0
2,897,247	-				-2.3
2,897,260	+				+1.5
2,897,261	-				-0.8
2,897,261	-				+0.2
2,897,381	+				-0.6
2,897,381	+				+0.2
2,897,382	-				+2.7
2,897,382	-				-1.9
2,897,382	-				+0.8
2,897,382	-				-0.1
2,897,382	-				-0.8
2,897,422	+				+0.8
2,897,422	+				+1.1
2,897,422	+				+1.5
2,897,422	+				-0.2
2,897,422	+				-0.5
2,897,423	-				-0.5
2,897,423	-				-0.3
2,897,423	-				+1.3
2,897,435	+				-2.7
2,897,435	+				+0.0
2,897,435	+				-0.5
2,897,436	-				+0.1
2,897,436	-				-0.3
2,897,436	-				+0.3
2,897,436	-				-0.2
2,897,436	-				+1.4
2,897,436	-				+0.6
2,897,436	-				+0.7
2,897,485	+				-0.3
2,897,485	+				+0.3
2,897,485	+				-0.1
2,897,485	+				+0.5
2,897,485	+				-0.2
2,897,485	+				-0.6
2,897,486	-				-0.3
2,897,486	-				-0.1
2,897,486	-				+1.3
2,897,487	+				-0.1
2,897,487	+				+2.5
2,897,487	+				-0.6
2,897,487	+				+0.1
2,897,487	+				-0.2
2,897,487	+				-0.5
2,897,487	+				-1.8
2,897,487	+				+0.0
2,897,488	-				-1.1
2,897,488	-				-1.5
2,897,488	-				-0.4
2,897,488	-				-2.1
2,897,488	-				-0.5
2,897,488	-				-0.5
2,897,488	-				-0.2
2,897,488	-				-1.2
2,897,488	-				+0.2
2,897,488	-				+0.1
2,897,491	+				+1.3
2,897,491	+				+0.5
2,897,491	+				+1.1
2,897,491	+				+0.9
2,897,491	+				+0.7
2,897,491	+				-0.5
2,897,491	+				+0.5
2,897,491	+				+0.5
2,897,491	+				+0.4
2,897,491	+				+1.1
2,897,491	+				-1.8
2,897,491	+				-0.3
2,897,491	+				+0.6
2,897,491	+				-0.2
2,897,492	-				-2.3
2,897,492	-				-1.5
2,897,492	-				+0.1
2,897,492	-				+0.3
2,897,492	-				+0.1
2,897,492	-				+1.1
2,897,492	-				+1.7
2,897,492	-				-0.5
2,897,492	-				+0.6
2,897,492	-				-0.1
2,897,492	-				+2.0
2,897,492	-				-0.9
2,897,492	-				+2.3
2,897,492	-				-0.1
2,897,492	-				+0.7
2,897,492	-				-0.5
2,897,493	+				+0.5
2,897,493	+				+0.0
2,897,493	+				-0.6
2,897,493	+				-1.3
2,897,494	-				-1.3
2,897,494	-				-2.6
2,897,494	-				+1.1
2,897,494	-				+0.2
2,897,494	-				-1.8
2,897,494	-				-0.5
2,897,494	-				-0.7
2,897,494	-				-0.6
2,897,494	-				-0.8
2,897,494	-				+0.3
2,897,494	-				+0.0
2,897,517	-				-1.4
2,897,517	-				+0.2
2,897,535	+				+0.8
2,897,547	+				-0.0
2,897,552	+				+0.8
2,897,552	+				+1.8
2,897,580	+		DZA65_RS13505	0.11	+0.1
2,897,581	-		DZA65_RS13505	0.11	+0.5
2,897,646	+		DZA65_RS13505	0.36	-1.1
2,897,646	+		DZA65_RS13505	0.36	+2.7
2,897,655	+		DZA65_RS13505	0.40	-0.4
2,897,655	+		DZA65_RS13505	0.40	-0.0
2,897,655	+		DZA65_RS13505	0.40	+0.3
2,897,655	+		DZA65_RS13505	0.40	+0.9
2,897,656	-		DZA65_RS13505	0.40	+0.1
2,897,656	-		DZA65_RS13505	0.40	-1.1
2,897,656	-		DZA65_RS13505	0.40	-0.5
2,897,767	+		DZA65_RS13505	0.84	-1.7
2,897,767	+		DZA65_RS13505	0.84	-1.3
2,897,872	+				+0.2
2,897,872	+				+0.0
2,897,872	+				-0.9
2,897,872	+				-0.9
2,897,872	+				+0.5
2,897,872	+				-1.0
2,897,872	+				-0.2
2,897,873	-				+1.3
2,897,873	-				-0.1
2,897,873	-				-0.8
2,897,873	-				+0.5
2,897,873	-				+0.2
2,897,876	+				-0.0
2,897,876	+				-0.1
2,897,876	+				-1.1
2,897,876	+				+0.2
2,897,876	+				-0.2
2,897,876	+				-2.1
2,897,876	+				-0.6
2,897,876	+				-2.1
2,897,876	+				-1.6
2,897,876	+				+0.2
2,897,876	+				-0.1
2,897,876	+				+0.1
2,897,876	+				-1.1
2,897,876	+				+0.7
2,897,876	+				+1.8
2,897,876	+				+0.6
2,897,876	+				+0.6
2,897,876	+				-1.2
2,897,876	+				-0.1
2,897,876	+				+0.2
2,897,876	+				-0.4
2,897,877	-				-1.1
2,897,877	-				-0.3
2,897,877	-				+1.1
2,897,877	-				+0.5
2,897,877	-				-0.2
2,897,877	-				-0.8
2,897,877	-				+1.1
2,897,877	-				+0.8
2,897,877	-				-0.1
2,897,877	-				+5.2
2,897,877	-				-0.1
2,897,877	-				-0.5
2,897,877	-				-0.9
2,897,877	-				-0.2
2,897,877	-				+0.1
2,897,877	-				-0.0
2,897,877	-				+0.3
2,897,877	-				+1.0
2,897,877	-				-0.4
2,897,877	-				-0.2
2,897,930	+		DZA65_RS13510	0.16	-0.7
2,897,943	+		DZA65_RS13510	0.17	+0.5
2,897,944	-		DZA65_RS13510	0.17	+0.9
2,898,005	+		DZA65_RS13510	0.25	-0.9
2,898,005	+		DZA65_RS13510	0.25	-0.9
2,898,034	+		DZA65_RS13510	0.28	-2.6
2,898,034	+		DZA65_RS13510	0.28	-0.1
2,898,035	-		DZA65_RS13510	0.28	+0.2
2,898,035	-		DZA65_RS13510	0.28	+0.3
2,898,035	-		DZA65_RS13510	0.28	+1.3
2,898,035	-		DZA65_RS13510	0.28	-0.2
2,898,035	-		DZA65_RS13510	0.28	+0.1
2,898,255	+		DZA65_RS13510	0.55	+1.3