Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13245

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,831,400	+		DZA65_RS13235	0.34	+0.2
2,831,401	-		DZA65_RS13235	0.34	+0.8
2,831,401	-		DZA65_RS13235	0.34	+0.9
2,831,401	-		DZA65_RS13235	0.34	-0.2
2,831,462	+		DZA65_RS13235	0.46	-0.4
2,831,463	-		DZA65_RS13235	0.46	-1.2
2,831,545	+		DZA65_RS13235	0.62	+0.7
2,831,546	-		DZA65_RS13235	0.62	-0.5
2,831,546	-		DZA65_RS13235	0.62	+1.4
2,831,546	-		DZA65_RS13235	0.62	-0.1
2,831,546	-		DZA65_RS13235	0.62	-1.7
2,831,587	+		DZA65_RS13235	0.70	-1.5
2,831,588	-		DZA65_RS13235	0.70	-0.3
2,831,643	-		DZA65_RS13235	0.81	+0.5
2,831,695	-				-1.0
2,831,722	+				+2.2
2,831,722	+				-0.1
2,831,723	-				+1.6
2,831,723	-				+1.3
2,831,723	-				-0.4
2,831,738	-				-0.8
2,831,741	+				-0.2
2,831,741	+				-1.1
2,831,742	-				+0.7
2,831,742	-				+0.5
2,831,756	+				-0.0
2,831,756	+				+0.8
2,831,800	+				-2.5
2,831,801	-				-1.1
2,831,801	-				-0.1
2,831,804	-				-2.8
2,831,815	-				-1.5
2,831,840	+				-0.2
2,831,840	+				-1.1
2,831,841	-				-0.9
2,831,841	-				+0.4
2,831,841	-				-1.7
2,831,841	-				-1.5
2,831,848	+				-2.7
2,831,848	+				-1.7
2,831,848	+				+1.3
2,831,849	-				+0.8
2,831,862	-				-0.6
2,831,981	+		DZA65_RS13240	0.57	-0.7
2,832,014	-		DZA65_RS13240	0.76	+1.6
2,832,029	+		DZA65_RS13240	0.85	-0.9
2,832,030	-		DZA65_RS13240	0.86	+0.6
2,832,038	+				-0.1
2,832,039	-				+0.6
2,832,041	+				+1.5
2,832,042	-				+0.1
2,832,042	-				+1.2
2,832,047	+				-1.2
2,832,047	+				+0.1
2,832,047	+				+0.2
2,832,047	+				-0.7
2,832,047	+				+0.0
2,832,048	-				+0.2
2,832,048	-				-1.4
2,832,048	-				-0.7
2,832,048	-				-1.1
2,832,048	-				+1.1
2,832,048	-				+1.0
2,832,051	+				-1.5
2,832,068	-				+0.0
2,832,068	-				-2.5
2,832,068	-				+1.2
2,832,078	-				-0.8
2,832,078	-				-1.8
2,832,096	+				+0.1
2,832,118	+				+0.6
2,832,118	+				-0.5
2,832,118	+				+0.3
2,832,152	-				+0.6
2,832,195	-				+0.5
2,832,195	-				-1.1
2,832,236	+				+0.9
2,832,237	-				+0.2
2,832,242	+				-1.7
2,832,242	+				+0.5
2,832,247	+				+0.2
2,832,247	+				-1.1
2,832,247	+				+0.5
2,832,247	+				+0.2
2,832,247	+				-0.3
2,832,247	+				+0.7
2,832,248	-				-0.3
2,832,248	-				+1.4
2,832,277	+				+0.7
2,832,277	+				-0.0
2,832,277	+				+0.1
2,832,277	+				+0.1
2,832,277	+				-0.2
2,832,277	+				-1.7
2,832,277	+				+0.1
2,832,277	+				+1.1
2,832,277	+				+0.1
2,832,277	+				-2.1
2,832,277	+				+0.7
2,832,278	-				+0.9
2,832,278	-				-0.1
2,832,278	-				-0.0
2,832,278	-				-0.4
2,832,278	-				-0.5
2,832,278	-				+0.5
2,832,278	-				+0.9
2,832,278	-				-2.8
2,832,278	-				-2.1
2,832,278	-				+0.2
2,832,396	-		DZA65_RS13245	0.13	-0.5
2,832,623	+		DZA65_RS13245	0.32	+0.2
2,832,647	+		DZA65_RS13245	0.34	+0.2
2,832,647	+		DZA65_RS13245	0.34	-0.7
2,832,648	-		DZA65_RS13245	0.34	-1.1
2,832,648	-		DZA65_RS13245	0.34	-0.2
2,832,694	+		DZA65_RS13245	0.38	+0.8
2,832,704	+		DZA65_RS13245	0.39	-1.1
2,832,705	-		DZA65_RS13245	0.39	+0.7
2,832,877	+		DZA65_RS13245	0.53	-1.8
2,832,883	+		DZA65_RS13245	0.54	-0.5
2,832,883	+		DZA65_RS13245	0.54	-1.3
2,832,883	+		DZA65_RS13245	0.54	+2.9
2,832,883	+		DZA65_RS13245	0.54	-0.2
2,832,884	-		DZA65_RS13245	0.54	+0.3
2,832,884	-		DZA65_RS13245	0.54	+0.5
2,832,884	-		DZA65_RS13245	0.54	+0.2
2,832,916	+		DZA65_RS13245	0.57	-0.2
2,832,917	-		DZA65_RS13245	0.57	-2.3
2,832,937	+		DZA65_RS13245	0.58	-2.8
2,832,937	+		DZA65_RS13245	0.58	+0.4
2,832,937	+		DZA65_RS13245	0.58	+0.2
2,832,937	+		DZA65_RS13245	0.58	-0.7
2,832,937	+		DZA65_RS13245	0.58	+0.7
2,832,938	-		DZA65_RS13245	0.58	-1.1
2,832,938	-		DZA65_RS13245	0.58	+0.3
2,832,973	+		DZA65_RS13245	0.61	-0.5
2,832,973	+		DZA65_RS13245	0.61	+1.1
2,832,973	+		DZA65_RS13245	0.61	-1.2
2,832,973	+		DZA65_RS13245	0.61	-1.0
2,832,973	+		DZA65_RS13245	0.61	+1.1
2,832,973	+		DZA65_RS13245	0.61	-0.5
2,832,974	-		DZA65_RS13245	0.61	-0.5
2,832,974	-		DZA65_RS13245	0.61	-1.8
2,832,974	-		DZA65_RS13245	0.61	-0.5
2,832,974	-		DZA65_RS13245	0.61	-1.5
2,832,974	-		DZA65_RS13245	0.61	+0.5
2,832,974	-		DZA65_RS13245	0.61	-1.0
2,832,974	-		DZA65_RS13245	0.61	-0.5
2,832,974	-		DZA65_RS13245	0.61	+0.4
2,832,987	+		DZA65_RS13245	0.63	+0.9
2,832,987	+		DZA65_RS13245	0.63	-0.5
2,832,988	-		DZA65_RS13245	0.63	+0.1
2,832,988	-		DZA65_RS13245	0.63	+0.1
2,832,988	-		DZA65_RS13245	0.63	+0.1
2,832,988	-		DZA65_RS13245	0.63	-0.1
2,833,088	+		DZA65_RS13245	0.71	+0.8
2,833,115	+		DZA65_RS13245	0.73	-1.5
2,833,115	+		DZA65_RS13245	0.73	-2.3
2,833,115	+		DZA65_RS13245	0.73	-0.4
2,833,123	+		DZA65_RS13245	0.74	-2.1
2,833,123	+		DZA65_RS13245	0.74	-1.5
2,833,123	+		DZA65_RS13245	0.74	-0.8
2,833,123	+		DZA65_RS13245	0.74	-0.5
2,833,123	+		DZA65_RS13245	0.74	+0.5
2,833,123	+		DZA65_RS13245	0.74	+1.3
2,833,123	+		DZA65_RS13245	0.74	-0.2
2,833,123	+		DZA65_RS13245	0.74	+1.0
2,833,123	+		DZA65_RS13245	0.74	-0.7
2,833,124	-		DZA65_RS13245	0.74	+0.1
2,833,124	-		DZA65_RS13245	0.74	-0.8
2,833,124	-		DZA65_RS13245	0.74	-0.4
2,833,124	-		DZA65_RS13245	0.74	+0.9
2,833,130	-		DZA65_RS13245	0.75	+1.2
2,833,271	+		DZA65_RS13245	0.86	-0.7
2,833,271	+		DZA65_RS13245	0.86	-0.5
2,833,271	+		DZA65_RS13245	0.86	-0.2
2,833,271	+		DZA65_RS13245	0.86	-0.8
2,833,272	-				-0.1
2,833,272	-		DZA65_RS13245	0.87	-0.4
2,833,272	-		DZA65_RS13245	0.87	+0.2
2,833,272	-		DZA65_RS13245	0.87	-0.1
2,833,272	-		DZA65_RS13245	0.87	+0.8
2,833,272	-		DZA65_RS13245	0.87	-1.6
2,833,272	-		DZA65_RS13245	0.87	-0.1
2,833,272	-		DZA65_RS13245	0.87	-1.2
2,833,303	+		DZA65_RS13245	0.89	+0.1
2,833,303	+		DZA65_RS13245	0.89	-0.8
2,833,303	+		DZA65_RS13245	0.89	+0.1
2,833,304	-		DZA65_RS13245	0.89	-0.5
2,833,304	-		DZA65_RS13245	0.89	-1.2
2,833,304	-		DZA65_RS13245	0.89	+0.5
2,833,304	-		DZA65_RS13245	0.89	-0.7
2,833,304	-		DZA65_RS13245	0.89	-1.7
2,833,399	-				+0.5
2,833,399	-				+0.2
2,833,459	+				-0.7
2,833,519	-				+0.5
2,833,583	+				-0.9
2,833,583	+				+0.5
2,833,583	+				+0.5
2,833,583	+				+1.2
2,833,583	+				+0.3
2,833,583	+				-2.5
2,833,583	+				+0.7
2,833,583	+				+0.3
2,833,583	+				-0.2
2,833,583	+				-1.4
2,833,583	+				-0.5
2,833,583	+				-0.5
2,833,583	+				+0.2
2,833,583	+				-1.1
2,833,583	+				-0.4
2,833,584	-				+1.1
2,833,584	-				-3.1
2,833,584	-				+0.2
2,833,584	-				+0.2
2,833,592	+				-1.7
2,833,593	-				-0.1
2,833,662	+		DZA65_RS13250	0.11	+0.5
2,833,662	+		DZA65_RS13250	0.11	+2.1
2,833,682	+		DZA65_RS13250	0.13	+0.0
2,833,682	+		DZA65_RS13250	0.13	-0.7
2,833,682	+		DZA65_RS13250	0.13	-1.3
2,833,683	-		DZA65_RS13250	0.13	-1.2
2,833,683	-		DZA65_RS13250	0.13	+1.5
2,833,701	+		DZA65_RS13250	0.14	-0.2
2,833,701	+		DZA65_RS13250	0.14	+0.2
2,833,701	+		DZA65_RS13250	0.14	+0.2
2,833,702	-		DZA65_RS13250	0.14	+0.8
2,833,746	-		DZA65_RS13250	0.17	-0.0
2,833,746	-		DZA65_RS13250	0.17	+0.0
2,833,746	-		DZA65_RS13250	0.17	-0.3
2,833,746	-		DZA65_RS13250	0.17	-0.5
2,833,760	+		DZA65_RS13250	0.18	+0.8
2,833,760	+		DZA65_RS13250	0.18	+0.5
2,833,761	-		DZA65_RS13250	0.18	+0.2
2,833,761	-		DZA65_RS13250	0.18	+0.5
2,833,761	-		DZA65_RS13250	0.18	-2.1
2,833,761	-		DZA65_RS13250	0.18	-1.5
2,833,801	-		DZA65_RS13250	0.21	+0.4
2,833,817	+		DZA65_RS13250	0.22	+0.2
2,833,817	+		DZA65_RS13250	0.22	-3.3
2,833,817	+		DZA65_RS13250	0.22	+0.2
2,833,818	-		DZA65_RS13250	0.22	-0.0
2,833,818	-		DZA65_RS13250	0.22	+1.0
2,833,818	-		DZA65_RS13250	0.22	-2.1
2,833,818	-		DZA65_RS13250	0.22	-0.6
2,833,818	-		DZA65_RS13250	0.22	-0.6
2,833,818	-		DZA65_RS13250	0.22	-0.1
2,833,818	-		DZA65_RS13250	0.22	+0.5
2,833,818	-		DZA65_RS13250	0.22	-1.8
2,833,823	+		DZA65_RS13250	0.22	+0.3
2,833,824	-		DZA65_RS13250	0.22	+1.2
2,833,824	-		DZA65_RS13250	0.22	-1.1
2,833,824	-		DZA65_RS13250	0.22	-0.2
2,833,824	-		DZA65_RS13250	0.22	-1.1
2,833,844	+		DZA65_RS13250	0.23	+1.7
2,833,844	+		DZA65_RS13250	0.23	+0.3
2,833,844	+		DZA65_RS13250	0.23	-0.3
2,833,844	+		DZA65_RS13250	0.23	-0.3
2,833,845	-				+2.1
2,833,845	-		DZA65_RS13250	0.23	-0.2
2,833,845	-		DZA65_RS13250	0.23	+0.5
2,833,845	-		DZA65_RS13250	0.23	+0.1
2,833,883	+		DZA65_RS13250	0.26	+0.4
2,833,883	+		DZA65_RS13250	0.26	-0.4
2,833,883	+		DZA65_RS13250	0.26	-1.8
2,833,883	+		DZA65_RS13250	0.26	-0.7
2,833,883	+		DZA65_RS13250	0.26	-1.7
2,833,883	+		DZA65_RS13250	0.26	-1.8
2,833,883	+		DZA65_RS13250	0.26	+0.1
2,833,883	+		DZA65_RS13250	0.26	+0.5
2,833,883	+		DZA65_RS13250	0.26	+0.3
2,833,883	+		DZA65_RS13250	0.26	-0.1
2,833,883	+		DZA65_RS13250	0.26	-0.5
2,833,883	+		DZA65_RS13250	0.26	-1.5
2,833,884	-		DZA65_RS13250	0.26	-0.7
2,833,884	-				+0.5
2,833,884	-		DZA65_RS13250	0.26	-0.5
2,833,884	-		DZA65_RS13250	0.26	+0.6
2,833,884	-		DZA65_RS13250	0.26	+0.4
2,833,884	-		DZA65_RS13250	0.26	+0.5
2,833,884	-		DZA65_RS13250	0.26	+0.2
2,833,884	-		DZA65_RS13250	0.26	-1.2
2,833,884	-		DZA65_RS13250	0.26	-1.8
2,833,884	-		DZA65_RS13250	0.26	-0.1
2,833,938	-		DZA65_RS13250	0.29	+0.5
2,833,940	+		DZA65_RS13250	0.30	+1.1
2,833,941	-		DZA65_RS13250	0.30	-0.2
2,833,941	-		DZA65_RS13250	0.30	-0.8
2,833,941	-		DZA65_RS13250	0.30	+0.5
2,833,945	-		DZA65_RS13250	0.30	-0.8
2,833,945	-		DZA65_RS13250	0.30	+0.5
2,834,007	+		DZA65_RS13250	0.34	-0.1
2,834,008	-		DZA65_RS13250	0.34	-0.5
2,834,034	+		DZA65_RS13250	0.36	+0.5
2,834,102	+		DZA65_RS13250	0.40	-2.5
2,834,103	-		DZA65_RS13250	0.40	+0.5
2,834,103	-		DZA65_RS13250	0.40	-1.8
2,834,103	-		DZA65_RS13250	0.40	+2.1
2,834,109	+		DZA65_RS13250	0.41	-1.7
2,834,110	-		DZA65_RS13250	0.41	-0.2
2,834,142	+		DZA65_RS13250	0.43	-1.5
2,834,157	-		DZA65_RS13250	0.44	-1.8
2,834,205	+		DZA65_RS13250	0.47	+1.1
2,834,208	-		DZA65_RS13250	0.47	-1.6
2,834,208	-		DZA65_RS13250	0.47	-0.7
2,834,229	+		DZA65_RS13250	0.48	+1.4
2,834,243	+		DZA65_RS13250	0.49	-0.2
2,834,264	+		DZA65_RS13250	0.51	-0.1
2,834,301	+		DZA65_RS13250	0.53	-0.4
2,834,322	+		DZA65_RS13250	0.55	-0.1
2,834,358	+		DZA65_RS13250	0.57	+0.1
2,834,359	-		DZA65_RS13250	0.57	+1.1
2,834,359	-		DZA65_RS13250	0.57	+1.5
2,834,359	-		DZA65_RS13250	0.57	+1.0
2,834,359	-		DZA65_RS13250	0.57	+0.5
2,834,390	+		DZA65_RS13250	0.59	+0.7