Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13145

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,817,133	+		DZA65_RS13140	0.49	+0.0
2,817,148	+		DZA65_RS13140	0.50	-0.9
2,817,149	-		DZA65_RS13140	0.50	-0.2
2,817,224	-		DZA65_RS13140	0.57	-0.7
2,817,281	+		DZA65_RS13140	0.63	-0.2
2,817,282	-				+0.5
2,817,282	-		DZA65_RS13140	0.63	-2.7
2,817,396	+		DZA65_RS13140	0.74	-0.1
2,817,396	+		DZA65_RS13140	0.74	-1.3
2,817,438	+		DZA65_RS13140	0.78	+2.7
2,817,438	+		DZA65_RS13140	0.78	-1.8
2,817,438	+		DZA65_RS13140	0.78	-0.3
2,817,438	+		DZA65_RS13140	0.78	+1.2
2,817,439	-		DZA65_RS13140	0.78	+1.4
2,817,464	+				+0.9
2,817,464	+		DZA65_RS13140	0.81	+0.1
2,817,464	+		DZA65_RS13140	0.81	-1.7
2,817,464	+		DZA65_RS13140	0.81	-0.8
2,817,464	+		DZA65_RS13140	0.81	+1.8
2,817,464	+		DZA65_RS13140	0.81	-0.1
2,817,465	-		DZA65_RS13140	0.81	+0.9
2,817,465	-		DZA65_RS13140	0.81	+1.5
2,817,465	-		DZA65_RS13140	0.81	-1.7
2,817,465	-		DZA65_RS13140	0.81	-0.9
2,817,465	-		DZA65_RS13140	0.81	-0.8
2,817,465	-		DZA65_RS13140	0.81	+0.2
2,817,465	-		DZA65_RS13140	0.81	-1.3
2,817,465	-				+0.5
2,817,465	-		DZA65_RS13140	0.81	+0.5
2,817,465	-		DZA65_RS13140	0.81	-0.2
2,817,465	-		DZA65_RS13140	0.81	+2.3
2,817,465	-		DZA65_RS13140	0.81	-1.5
2,817,465	-		DZA65_RS13140	0.81	-0.6
2,817,478	+		DZA65_RS13140	0.82	+0.3
2,817,484	-		DZA65_RS13140	0.83	-0.7
2,817,588	+				+0.3
2,817,589	-				-2.1
2,817,679	-				-0.6
2,817,722	+				+0.1
2,817,723	-				-0.2
2,817,723	-				-0.1
2,817,723	-				+0.1
2,817,776	-				-0.7
2,817,813	+				+0.1
2,817,814	-				-1.5
2,817,814	-				-0.5
2,817,814	-				+0.2
2,817,814	-				+0.8
2,817,819	+				-0.1
2,817,819	+				-0.4
2,817,819	+				+0.1
2,817,819	+				+0.8
2,817,819	+				-0.2
2,817,819	+				-0.3
2,817,819	+				-1.1
2,817,819	+				+2.8
2,817,820	-				+0.2
2,817,820	-				+0.8
2,817,820	-				-0.8
2,817,820	-				-0.2
2,817,820	-				+1.8
2,817,820	-				-0.7
2,817,820	-				+0.4
2,817,820	-				-1.5
2,817,820	-				+0.7
2,817,820	-				+0.9
2,817,820	-				+0.2
2,817,840	+				-0.4
2,817,840	+				-1.3
2,817,840	+				-0.3
2,817,840	+				+1.0
2,817,891	-				-1.5
2,817,934	+				-0.2
2,817,934	+				+0.5
2,817,934	+				-1.1
2,817,935	-				-0.2
2,817,935	-				+0.3
2,817,935	-				+0.2
2,817,962	+				-0.5
2,817,962	+				-1.5
2,817,963	-				+1.5
2,817,987	+				-0.3
2,818,018	+				-0.8
2,818,019	-				+0.6
2,818,026	-				+1.2
2,818,026	-				-0.8
2,818,035	+				-0.1
2,818,036	-				+0.1
2,818,036	-				-0.7
2,818,082	+				+0.2
2,818,082	+				+0.5
2,818,083	-				+0.2
2,818,083	-				+0.4
2,818,095	+				-0.2
2,818,095	+				+0.1
2,818,095	+				+0.2
2,818,095	+				+0.1
2,818,095	+				+1.1
2,818,095	+				+0.5
2,818,095	+				-1.1
2,818,096	-				-2.7
2,818,096	-				+0.0
2,818,096	-				+3.6
2,818,096	-				+0.7
2,818,096	-				-0.0
2,818,096	-				-1.1
2,818,096	-				-0.1
2,818,123	+				+0.0
2,818,124	-				+1.1
2,818,124	-				+0.0
2,818,196	+				-0.3
2,818,196	+				+0.7
2,818,197	-				-0.0
2,818,217	+		DZA65_RS13145	0.12	-0.3
2,818,217	+		DZA65_RS13145	0.12	+1.0
2,818,217	+		DZA65_RS13145	0.12	-0.5
2,818,221	+		DZA65_RS13145	0.12	+0.5
2,818,221	+		DZA65_RS13145	0.12	+1.1
2,818,221	+		DZA65_RS13145	0.12	+1.4
2,818,221	+		DZA65_RS13145	0.12	-2.1
2,818,221	+		DZA65_RS13145	0.12	+0.9
2,818,222	-		DZA65_RS13145	0.12	+0.0
2,818,222	-		DZA65_RS13145	0.12	-1.7
2,818,222	-		DZA65_RS13145	0.12	-0.2
2,818,231	+		DZA65_RS13145	0.13	+0.5
2,818,266	+		DZA65_RS13145	0.16	+0.5
2,818,266	+		DZA65_RS13145	0.16	-0.8
2,818,266	+		DZA65_RS13145	0.16	+1.4
2,818,266	+		DZA65_RS13145	0.16	+0.5
2,818,266	+		DZA65_RS13145	0.16	+1.5
2,818,266	+		DZA65_RS13145	0.16	+1.4
2,818,266	+		DZA65_RS13145	0.16	+1.0
2,818,266	+		DZA65_RS13145	0.16	-2.5
2,818,266	+		DZA65_RS13145	0.16	-1.1
2,818,266	+		DZA65_RS13145	0.16	-1.8
2,818,266	+		DZA65_RS13145	0.16	-0.8
2,818,266	+		DZA65_RS13145	0.16	-2.9
2,818,267	-		DZA65_RS13145	0.16	-1.8
2,818,267	-		DZA65_RS13145	0.16	+0.1
2,818,267	-		DZA65_RS13145	0.16	-0.5
2,818,267	-				+0.8
2,818,267	-		DZA65_RS13145	0.16	-0.0
2,818,267	-		DZA65_RS13145	0.16	-2.3
2,818,267	-		DZA65_RS13145	0.16	-1.3
2,818,268	+		DZA65_RS13145	0.16	+2.2
2,818,268	+		DZA65_RS13145	0.16	-0.5
2,818,268	+		DZA65_RS13145	0.16	+0.8
2,818,268	+		DZA65_RS13145	0.16	+2.1
2,818,269	-		DZA65_RS13145	0.16	-0.2
2,818,269	-		DZA65_RS13145	0.16	-0.7
2,818,269	-		DZA65_RS13145	0.16	+0.9
2,818,269	-		DZA65_RS13145	0.16	-0.0
2,818,365	-		DZA65_RS13145	0.24	+0.1
2,818,370	-		DZA65_RS13145	0.25	+3.6
2,818,440	+		DZA65_RS13145	0.31	+0.2
2,818,440	+		DZA65_RS13145	0.31	-1.3
2,818,440	+		DZA65_RS13145	0.31	+0.2
2,818,441	-		DZA65_RS13145	0.31	-0.5
2,818,482	+		DZA65_RS13145	0.35	-0.2
2,818,482	+		DZA65_RS13145	0.35	-0.5
2,818,482	+		DZA65_RS13145	0.35	+0.4
2,818,482	+		DZA65_RS13145	0.35	+0.0
2,818,482	+		DZA65_RS13145	0.35	-1.9
2,818,483	-		DZA65_RS13145	0.35	-0.4
2,818,483	-		DZA65_RS13145	0.35	+0.7
2,818,483	-		DZA65_RS13145	0.35	-0.9
2,818,483	-		DZA65_RS13145	0.35	+1.7
2,818,484	+		DZA65_RS13145	0.35	+1.2
2,818,484	+		DZA65_RS13145	0.35	+0.8
2,818,484	+		DZA65_RS13145	0.35	-1.3
2,818,484	+		DZA65_RS13145	0.35	+0.5
2,818,484	+		DZA65_RS13145	0.35	-0.5
2,818,484	+		DZA65_RS13145	0.35	+0.3
2,818,484	+		DZA65_RS13145	0.35	-0.2
2,818,484	+		DZA65_RS13145	0.35	+1.0
2,818,484	+		DZA65_RS13145	0.35	-0.9
2,818,484	+		DZA65_RS13145	0.35	-0.3
2,818,485	-		DZA65_RS13145	0.35	-0.3
2,818,485	-		DZA65_RS13145	0.35	+0.1
2,818,485	-		DZA65_RS13145	0.35	-0.8
2,818,485	-		DZA65_RS13145	0.35	+0.5
2,818,485	-		DZA65_RS13145	0.35	-1.5
2,818,485	-		DZA65_RS13145	0.35	-1.1
2,818,485	-		DZA65_RS13145	0.35	+0.8
2,818,491	+		DZA65_RS13145	0.35	-0.6
2,818,504	-		DZA65_RS13145	0.37	+0.2
2,818,586	+		DZA65_RS13145	0.44	-2.7
2,818,747	-		DZA65_RS13145	0.58	-0.3
2,818,819	-		DZA65_RS13145	0.64	-0.2
2,818,827	+		DZA65_RS13145	0.65	-1.8
2,818,828	-		DZA65_RS13145	0.65	+0.5
2,818,828	-		DZA65_RS13145	0.65	-0.0
2,818,880	+		DZA65_RS13145	0.69	-0.2
2,818,880	+		DZA65_RS13145	0.69	+0.8
2,818,881	-		DZA65_RS13145	0.69	+0.8
2,818,881	-		DZA65_RS13145	0.69	-0.2
2,818,912	+		DZA65_RS13145	0.72	+0.5
2,818,913	-		DZA65_RS13145	0.72	+2.2
2,818,932	+		DZA65_RS13145	0.74	+1.2
2,818,932	+		DZA65_RS13145	0.74	+0.5
2,818,933	-		DZA65_RS13145	0.74	+0.4
2,818,934	+		DZA65_RS13145	0.74	-0.9
2,818,992	+		DZA65_RS13145	0.79	+0.5
2,818,992	+		DZA65_RS13145	0.79	+2.0
2,818,992	+		DZA65_RS13145	0.79	-0.7
2,819,031	+		DZA65_RS13145	0.82	+2.5
2,819,031	+		DZA65_RS13145	0.82	+1.3
2,819,031	+		DZA65_RS13145	0.82	-0.2
2,819,031	+		DZA65_RS13145	0.82	-1.0
2,819,031	+		DZA65_RS13145	0.82	+0.3
2,819,031	+		DZA65_RS13145	0.82	+2.4
2,819,032	-		DZA65_RS13145	0.82	+0.5
2,819,032	-		DZA65_RS13145	0.82	+1.1
2,819,032	-		DZA65_RS13145	0.82	+0.9
2,819,032	-		DZA65_RS13145	0.82	+0.0
2,819,032	-		DZA65_RS13145	0.82	-1.8
2,819,039	+		DZA65_RS13145	0.83	+0.5
2,819,039	+		DZA65_RS13145	0.83	+0.0
2,819,040	-		DZA65_RS13145	0.83	+0.1
2,819,040	-		DZA65_RS13145	0.83	+0.3
2,819,040	-		DZA65_RS13145	0.83	+0.4
2,819,097	+		DZA65_RS13145	0.88	-0.3
2,819,128	-				-0.8
2,819,130	+				+1.8
2,819,130	+				-2.1
2,819,130	+				-0.9
2,819,130	+				+0.5
2,819,130	+				-0.3
2,819,131	-				-0.8
2,819,170	+				+0.9
2,819,170	+				-0.2
2,819,170	+				-1.3
2,819,170	+				+0.7
2,819,170	+				-0.9
2,819,170	+				+0.7
2,819,171	-				-0.7
2,819,171	-				-1.7
2,819,171	-				-1.8
2,819,171	-				+1.3
2,819,171	-				-1.3
2,819,171	-				-2.2
2,819,171	-				-0.6
2,819,171	-				+0.2
2,819,171	-				-1.7
2,819,171	-				+0.5
2,819,188	+				+0.5
2,819,188	+				-0.9
2,819,198	-				+0.4
2,819,198	-				+0.3
2,819,232	+				+0.4
2,819,232	+				-0.3
2,819,233	-				-0.8
2,819,233	-				-0.7
2,819,316	-				+0.5
2,820,167	+				-0.1
2,820,167	+				-0.2
2,820,167	+				+0.4
2,820,184	+				+1.0
2,820,184	+				-0.8
2,820,184	+				-1.5
2,820,209	+				-0.4
2,820,209	+				+1.1
2,820,209	+				+0.9
2,820,210	-				+0.5
2,820,211	+				-0.2
2,820,212	-				+0.2
2,820,221	-				-1.5