Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12650

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,706,630	+		DZA65_RS12640	0.73	-1.5
2,706,631	-				-1.5
2,706,631	-		DZA65_RS12640	0.73	+2.5
2,706,654	+		DZA65_RS12640	0.77	-0.5
2,706,655	-		DZA65_RS12640	0.77	-0.6
2,706,655	-		DZA65_RS12640	0.77	-0.3
2,706,655	-		DZA65_RS12640	0.77	-1.4
2,706,659	-				+0.7
2,706,684	+		DZA65_RS12640	0.82	+0.7
2,706,685	-		DZA65_RS12640	0.82	-0.6
2,706,685	-		DZA65_RS12640	0.82	+0.5
2,706,687	-		DZA65_RS12640	0.82	+1.2
2,706,707	-		DZA65_RS12640	0.86	+0.2
2,706,731	+		DZA65_RS12640	0.90	-0.5
2,706,731	+		DZA65_RS12640	0.90	+0.3
2,706,732	-				-0.2
2,706,770	+				-0.8
2,706,770	+				+1.0
2,706,771	-				-1.2
2,706,771	-				-0.4
2,706,771	-				-0.5
2,706,772	+				+0.6
2,706,844	-				-1.0
2,706,856	+		DZA65_RS12645	0.10	+0.1
2,706,856	+		DZA65_RS12645	0.10	-1.7
2,706,856	+		DZA65_RS12645	0.10	+1.0
2,706,857	-		DZA65_RS12645	0.10	-0.3
2,706,858	+		DZA65_RS12645	0.11	-0.0
2,706,858	+		DZA65_RS12645	0.11	+1.3
2,706,858	+		DZA65_RS12645	0.11	-1.6
2,706,858	+		DZA65_RS12645	0.11	-0.1
2,706,859	-		DZA65_RS12645	0.11	+0.7
2,706,859	-				+0.5
2,706,859	-		DZA65_RS12645	0.11	-2.5
2,706,868	+		DZA65_RS12645	0.12	-0.1
2,706,869	-		DZA65_RS12645	0.12	-0.9
2,706,869	-				-1.1
2,706,895	+		DZA65_RS12645	0.17	+0.7
2,706,895	+		DZA65_RS12645	0.17	-0.7
2,706,895	+		DZA65_RS12645	0.17	-1.0
2,706,895	+		DZA65_RS12645	0.17	+1.0
2,706,895	+		DZA65_RS12645	0.17	-2.3
2,706,896	-		DZA65_RS12645	0.17	-0.9
2,706,896	-		DZA65_RS12645	0.17	+1.7
2,706,898	-		DZA65_RS12645	0.17	+0.1
2,706,898	-		DZA65_RS12645	0.17	+0.3
2,706,904	-		DZA65_RS12645	0.18	+1.0
2,706,916	+		DZA65_RS12645	0.20	+0.8
2,706,916	+		DZA65_RS12645	0.20	+0.5
2,706,916	+		DZA65_RS12645	0.20	+1.1
2,706,916	+		DZA65_RS12645	0.20	-0.2
2,706,917	-		DZA65_RS12645	0.20	+0.7
2,706,917	-		DZA65_RS12645	0.20	+0.2
2,706,917	-		DZA65_RS12645	0.20	-2.1
2,706,917	-		DZA65_RS12645	0.20	-0.1
2,706,917	-		DZA65_RS12645	0.20	-0.5
2,707,141	+		DZA65_RS12645	0.57	-0.1
2,707,231	+		DZA65_RS12645	0.72	+0.8
2,707,270	+		DZA65_RS12645	0.78	+0.5
2,707,271	-		DZA65_RS12645	0.78	-1.1
2,707,333	+		DZA65_RS12645	0.88	+0.8
2,707,333	+		DZA65_RS12645	0.88	+1.0
2,707,333	+		DZA65_RS12645	0.88	-0.8
2,707,333	+		DZA65_RS12645	0.88	-0.2
2,707,333	+		DZA65_RS12645	0.88	+1.5
2,707,333	+		DZA65_RS12645	0.88	+0.6
2,707,334	-		DZA65_RS12645	0.88	-0.5
2,707,334	-		DZA65_RS12645	0.88	-0.7
2,707,334	-		DZA65_RS12645	0.88	+0.7
2,707,334	-		DZA65_RS12645	0.88	-0.7
2,707,334	-		DZA65_RS12645	0.88	+0.5
2,707,334	-		DZA65_RS12645	0.88	+0.0
2,707,334	-		DZA65_RS12645	0.88	+1.2
2,707,334	-		DZA65_RS12645	0.88	+0.5
2,707,335	+		DZA65_RS12645	0.89	-0.2
2,707,335	+		DZA65_RS12645	0.89	-0.1
2,707,335	+		DZA65_RS12645	0.89	+0.5
2,707,335	+		DZA65_RS12645	0.89	-1.1
2,707,336	-		DZA65_RS12645	0.89	+0.9
2,707,336	-		DZA65_RS12645	0.89	+0.1
2,707,336	-		DZA65_RS12645	0.89	+0.2
2,707,336	-		DZA65_RS12645	0.89	+0.0
2,707,336	-		DZA65_RS12645	0.89	-0.1
2,707,340	+		DZA65_RS12645	0.89	+0.7
2,707,340	+		DZA65_RS12645	0.89	+1.8
2,707,340	+		DZA65_RS12645	0.89	+0.1
2,707,341	-		DZA65_RS12645	0.90	-0.7
2,707,341	-		DZA65_RS12645	0.90	-1.3
2,707,341	-		DZA65_RS12645	0.90	+0.7
2,707,341	-		DZA65_RS12645	0.90	+0.3
2,707,341	-		DZA65_RS12645	0.90	+1.4
2,707,341	-		DZA65_RS12645	0.90	-0.6
2,707,346	+				-0.2
2,707,347	-				+0.0
2,707,347	-				-0.1
2,707,595	+				-0.3
2,707,596	-				+0.1
2,707,596	-				-1.2
2,707,596	-				+0.2
2,707,599	-				-0.6
2,707,696	+				-0.4
2,707,696	+				+2.1
2,707,696	+				+1.1
2,707,697	-				+0.1
2,707,697	-				+0.8
2,707,697	-				-0.7
2,707,697	-				-0.5
2,707,763	+		DZA65_RS12650	0.11	-1.5
2,707,763	+		DZA65_RS12650	0.11	-0.1
2,707,763	+		DZA65_RS12650	0.11	+0.5
2,707,764	-		DZA65_RS12650	0.12	-1.1
2,707,764	-		DZA65_RS12650	0.12	+0.1
2,707,764	-		DZA65_RS12650	0.12	+0.8
2,707,764	-		DZA65_RS12650	0.12	-1.5
2,707,779	-		DZA65_RS12650	0.13	-0.5
2,707,953	+		DZA65_RS12650	0.28	-1.1
2,708,010	-		DZA65_RS12650	0.33	-2.0
2,708,010	-		DZA65_RS12650	0.33	+0.3
2,708,091	+		DZA65_RS12650	0.39	+0.3
2,708,092	-		DZA65_RS12650	0.40	-0.8
2,708,112	-		DZA65_RS12650	0.41	+0.9
2,708,136	+		DZA65_RS12650	0.43	-0.9
2,708,227	-		DZA65_RS12650	0.51	-0.4
2,708,263	+		DZA65_RS12650	0.54	+0.1
2,708,264	-		DZA65_RS12650	0.54	-0.5
2,708,264	-		DZA65_RS12650	0.54	+0.3
2,708,264	-		DZA65_RS12650	0.54	+0.0
2,708,340	+		DZA65_RS12650	0.61	-0.8
2,708,412	-		DZA65_RS12650	0.67	-2.1
2,708,412	-		DZA65_RS12650	0.67	-2.1
2,708,479	-		DZA65_RS12650	0.73	-0.4
2,708,479	-		DZA65_RS12650	0.73	+1.2
2,708,573	+		DZA65_RS12650	0.81	-2.1
2,708,619	+		DZA65_RS12650	0.85	-0.5
2,708,619	+		DZA65_RS12650	0.85	+0.2
2,708,619	+		DZA65_RS12650	0.85	-2.0
2,708,619	+		DZA65_RS12650	0.85	-2.3
2,708,619	+		DZA65_RS12650	0.85	+0.0
2,708,620	-		DZA65_RS12650	0.85	-0.9
2,708,691	+				+0.7
2,708,691	+				-0.7
2,708,706	+				-0.2
2,708,706	+				-0.0
2,708,707	-				-0.4
2,708,707	-				-0.1
2,708,707	-				-0.3
2,708,707	-				+1.0
2,708,707	-				-0.8
2,708,707	-				-0.1
2,708,751	-				-0.7
2,708,763	+				-1.5
2,708,763	+				-0.1
2,708,763	+				-1.4
2,708,763	+				-1.1
2,708,764	-				+0.2
2,708,764	-				+0.5
2,708,796	+				-0.1
2,708,827	+				-0.5
2,708,833	+				+0.4
2,708,837	+				-0.3
2,708,838	-				-1.8
2,708,867	+		DZA65_RS12655	0.10	-0.1
2,708,867	+		DZA65_RS12655	0.10	+0.5
2,708,867	+		DZA65_RS12655	0.10	+0.6
2,708,867	+		DZA65_RS12655	0.10	-0.7
2,708,867	+		DZA65_RS12655	0.10	+1.3
2,708,867	+		DZA65_RS12655	0.10	-1.8
2,708,867	+		DZA65_RS12655	0.10	+0.2
2,708,867	+		DZA65_RS12655	0.10	+2.1
2,708,868	-		DZA65_RS12655	0.11	-0.9
2,708,868	-		DZA65_RS12655	0.11	+0.1
2,708,868	-		DZA65_RS12655	0.11	-0.1
2,708,925	-		DZA65_RS12655	0.22	-0.1
2,709,039	-				-0.1
2,709,087	-		DZA65_RS12655	0.53	-0.9
2,709,211	+		DZA65_RS12655	0.77	+2.1
2,709,211	+		DZA65_RS12655	0.77	-1.3
2,709,211	+		DZA65_RS12655	0.77	-1.7
2,709,211	+		DZA65_RS12655	0.77	-1.7
2,709,211	+		DZA65_RS12655	0.77	+0.4
2,709,211	+		DZA65_RS12655	0.77	-0.5
2,709,211	+		DZA65_RS12655	0.77	-0.0
2,709,211	+		DZA65_RS12655	0.77	+0.1
2,709,212	-		DZA65_RS12655	0.77	+0.6
2,709,212	-		DZA65_RS12655	0.77	+0.1
2,709,212	-		DZA65_RS12655	0.77	-0.1
2,709,212	-		DZA65_RS12655	0.77	+0.2
2,709,212	-		DZA65_RS12655	0.77	-0.7
2,709,212	-		DZA65_RS12655	0.77	+0.2
2,709,212	-		DZA65_RS12655	0.77	-0.3
2,709,212	-		DZA65_RS12655	0.77	+0.5
2,709,212	-		DZA65_RS12655	0.77	-1.1
2,709,212	-		DZA65_RS12655	0.77	-0.5
2,709,215	+		DZA65_RS12655	0.77	+0.1
2,709,215	+		DZA65_RS12655	0.77	+0.5
2,709,215	+		DZA65_RS12655	0.77	+0.5
2,709,215	+		DZA65_RS12655	0.77	-0.0
2,709,216	-		DZA65_RS12655	0.78	+0.5
2,709,216	-		DZA65_RS12655	0.78	-1.7
2,709,216	-		DZA65_RS12655	0.78	+0.5
2,709,216	-		DZA65_RS12655	0.78	-0.1
2,709,216	-		DZA65_RS12655	0.78	+1.1
2,709,216	-		DZA65_RS12655	0.78	+0.7
2,709,218	+		DZA65_RS12655	0.78	-0.1
2,709,218	+				-1.8
2,709,218	+		DZA65_RS12655	0.78	+0.1
2,709,218	+		DZA65_RS12655	0.78	-0.9
2,709,218	+		DZA65_RS12655	0.78	+1.0
2,709,218	+		DZA65_RS12655	0.78	+0.1
2,709,219	-		DZA65_RS12655	0.78	+1.3
2,709,219	-		DZA65_RS12655	0.78	-0.3
2,709,219	-		DZA65_RS12655	0.78	+3.1
2,709,219	-				+1.2
2,709,262	+		DZA65_RS12655	0.87	+0.0
2,709,262	+				+1.5
2,709,262	+		DZA65_RS12655	0.87	+2.6
2,709,578	+		DZA65_RS12660	0.64	+0.0
2,709,578	+		DZA65_RS12660	0.64	+1.2
2,709,579	-		DZA65_RS12660	0.64	-0.3
2,709,579	-		DZA65_RS12660	0.64	-0.7
2,709,579	-		DZA65_RS12660	0.64	+0.7
2,709,579	-		DZA65_RS12660	0.64	-1.5
2,709,787	-		DZA65_RS12665	0.69	+1.5