Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11345

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,411,532	+				-2.6
2,411,533	-				+0.3
2,411,533	-				-0.4
2,411,533	-				-0.1
2,411,533	-				-1.0
2,411,538	+				+0.6
2,411,538	+				-0.2
2,411,538	+				-1.8
2,411,539	-				-0.5
2,411,539	-				-0.6
2,411,539	-				-0.3
2,411,539	-				+1.0
2,411,539	-				-1.7
2,411,578	+				+0.7
2,411,651	-		DZA65_RS11340	0.19	-1.4
2,411,767	+		DZA65_RS11340	0.39	+0.5
2,411,860	+		DZA65_RS11340	0.55	-0.2
2,411,860	+		DZA65_RS11340	0.55	-0.6
2,411,860	+		DZA65_RS11340	0.55	-2.0
2,411,862	+		DZA65_RS11340	0.56	-1.4
2,411,862	+		DZA65_RS11340	0.56	-0.6
2,411,862	+		DZA65_RS11340	0.56	-0.0
2,411,862	+		DZA65_RS11340	0.56	-0.9
2,411,862	+		DZA65_RS11340	0.56	+0.7
2,411,862	+		DZA65_RS11340	0.56	-0.6
2,411,862	+		DZA65_RS11340	0.56	+0.6
2,411,862	+		DZA65_RS11340	0.56	+0.4
2,411,862	+		DZA65_RS11340	0.56	-0.8
2,411,863	-		DZA65_RS11340	0.56	+0.7
2,411,863	-		DZA65_RS11340	0.56	+0.6
2,411,863	-		DZA65_RS11340	0.56	-0.3
2,411,863	-		DZA65_RS11340	0.56	-0.9
2,411,863	-		DZA65_RS11340	0.56	-0.0
2,411,871	-		DZA65_RS11340	0.57	-0.3
2,411,882	-		DZA65_RS11340	0.59	+0.6
2,411,882	-		DZA65_RS11340	0.59	+1.2
2,411,904	+		DZA65_RS11340	0.63	-0.3
2,411,904	+		DZA65_RS11340	0.63	+2.5
2,411,904	+		DZA65_RS11340	0.63	+0.7
2,411,904	+		DZA65_RS11340	0.63	+0.7
2,411,904	+		DZA65_RS11340	0.63	+0.4
2,411,904	+		DZA65_RS11340	0.63	+0.8
2,411,904	+		DZA65_RS11340	0.63	-0.4
2,411,904	+		DZA65_RS11340	0.63	+0.6
2,411,904	+		DZA65_RS11340	0.63	-1.7
2,411,904	+		DZA65_RS11340	0.63	+1.9
2,411,905	-		DZA65_RS11340	0.63	-0.3
2,411,905	-		DZA65_RS11340	0.63	-0.8
2,411,905	-		DZA65_RS11340	0.63	+0.1
2,411,905	-		DZA65_RS11340	0.63	-0.6
2,411,905	-		DZA65_RS11340	0.63	+0.1
2,412,004	+		DZA65_RS11340	0.80	+0.2
2,412,004	+		DZA65_RS11340	0.80	-0.6
2,412,005	-		DZA65_RS11340	0.80	-1.3
2,412,007	-		DZA65_RS11340	0.80	+0.7
2,412,028	+		DZA65_RS11340	0.84	+0.9
2,412,028	+		DZA65_RS11340	0.84	+0.4
2,412,028	+		DZA65_RS11340	0.84	+0.7
2,412,028	+		DZA65_RS11340	0.84	-1.9
2,412,028	+		DZA65_RS11340	0.84	+0.4
2,412,029	-		DZA65_RS11340	0.84	-1.1
2,412,115	+				+0.4
2,412,116	-				-0.3
2,412,121	+				+1.0
2,412,121	+				+0.8
2,412,121	+				+0.9
2,412,121	+				-0.6
2,412,122	-				-0.2
2,412,122	-				-0.2
2,412,122	-				-0.0
2,412,122	-				-0.7
2,412,135	+				-1.2
2,412,136	-				-1.2
2,412,139	+				-1.0
2,412,139	+				-0.0
2,412,140	-				-1.6
2,412,140	-				-0.2
2,412,140	-				+0.1
2,412,140	-				-0.6
2,412,157	-				-1.0
2,412,174	-				-0.6
2,412,179	+				-0.4
2,412,179	+				-0.0
2,412,179	+				+0.2
2,412,179	+				+0.7
2,412,179	+				+0.1
2,412,179	+				+3.8
2,412,180	-				+0.1
2,412,180	-				-0.2
2,412,180	-				-1.0
2,412,180	-				+0.5
2,412,180	-				+0.2
2,412,180	-				-0.3
2,412,180	-				+0.8
2,412,180	-				-2.2
2,412,180	-				+0.4
2,412,181	+				-0.3
2,412,184	-				+0.7
2,412,338	-				+0.2
2,412,385	-				-1.2
2,412,385	-				+0.4
2,412,385	-				+1.0
2,412,386	+				-0.9
2,412,386	+				-0.8
2,412,455	+				-0.1
2,412,456	-				+0.2
2,412,456	-				+0.8
2,412,482	-				+0.4
2,412,596	-		DZA65_RS11345	0.15	+1.9
2,412,626	+		DZA65_RS11345	0.20	-0.8
2,412,626	+		DZA65_RS11345	0.20	-0.2
2,412,626	+		DZA65_RS11345	0.20	-0.4
2,412,626	+		DZA65_RS11345	0.20	-0.4
2,412,627	-		DZA65_RS11345	0.21	-0.6
2,412,660	+		DZA65_RS11345	0.27	+0.3
2,412,661	-		DZA65_RS11345	0.27	-1.3
2,412,661	-		DZA65_RS11345	0.27	-0.5
2,412,661	-		DZA65_RS11345	0.27	+1.0
2,412,721	+		DZA65_RS11345	0.38	+1.3
2,412,721	+		DZA65_RS11345	0.38	-0.4
2,412,721	+		DZA65_RS11345	0.38	+1.1
2,412,721	+		DZA65_RS11345	0.38	-0.0
2,412,722	-		DZA65_RS11345	0.39	+1.2
2,412,722	-		DZA65_RS11345	0.39	+1.4
2,412,722	-		DZA65_RS11345	0.39	+0.7
2,412,722	-		DZA65_RS11345	0.39	+4.0
2,412,722	-		DZA65_RS11345	0.39	+0.9
2,412,722	-		DZA65_RS11345	0.39	-0.0
2,412,722	-		DZA65_RS11345	0.39	+1.1
2,412,722	-				-0.2
2,412,722	-		DZA65_RS11345	0.39	-1.4
2,412,831	+		DZA65_RS11345	0.59	+0.0
2,412,831	+		DZA65_RS11345	0.59	-1.2
2,412,831	+		DZA65_RS11345	0.59	-3.2
2,412,831	+		DZA65_RS11345	0.59	-3.3
2,412,831	+		DZA65_RS11345	0.59	+0.5
2,412,831	+		DZA65_RS11345	0.59	-0.5
2,412,832	-		DZA65_RS11345	0.60	+0.3
2,412,832	-		DZA65_RS11345	0.60	-1.8
2,412,832	-		DZA65_RS11345	0.60	-2.4
2,412,832	-		DZA65_RS11345	0.60	-0.2
2,412,898	-		DZA65_RS11345	0.72	+1.4
2,412,920	-		DZA65_RS11345	0.76	+0.8
2,412,929	-		DZA65_RS11345	0.78	-0.8
2,412,963	-		DZA65_RS11345	0.85	-0.3
2,412,963	-		DZA65_RS11345	0.85	+0.4
2,412,978	+		DZA65_RS11345	0.87	+1.0
2,412,979	-		DZA65_RS11345	0.88	-0.3
2,412,979	-		DZA65_RS11345	0.88	+1.4
2,412,979	-		DZA65_RS11345	0.88	-0.1
2,412,979	-		DZA65_RS11345	0.88	+1.1
2,412,979	-		DZA65_RS11345	0.88	+0.4
2,413,034	+				-0.3
2,413,090	+				+0.3
2,413,091	-				-0.3
2,413,091	-				+0.2
2,413,095	+				-0.2
2,413,096	-				-0.8
2,413,147	+				+1.0
2,413,147	+				-0.9
2,413,147	+				+0.7
2,413,147	+				-0.5
2,413,147	+				-0.9
2,413,147	+				-0.1
2,413,148	-				+1.6
2,413,148	-				-0.2
2,413,152	+				+0.8
2,413,152	+				+0.1
2,413,152	+				-0.3
2,413,153	-				+0.6
2,413,153	-				+1.0
2,413,153	-				-1.4
2,413,179	+				-1.1
2,413,179	+				+0.2
2,413,180	-				-0.4
2,413,181	+				-1.4
2,413,181	+				+0.8
2,413,213	+				+0.9
2,413,213	+				-0.0
2,413,226	-				+0.3
2,413,267	+				+0.1
2,413,267	+				-0.5
2,413,267	+				+0.6
2,413,267	+				-3.0
2,413,268	-				+0.4
2,413,268	-				-0.8
2,413,278	+				-2.4
2,413,300	+				+0.9
2,413,301	-				+0.2
2,413,326	+				+0.1
2,413,327	-				+1.0
2,413,327	-				-3.0
2,413,327	-				-0.0
2,413,356	+				-2.2
2,413,356	+				+1.4
2,413,358	+				-2.2
2,413,358	+				+0.7
2,413,358	+				-1.6
2,413,371	+				-0.6
2,413,372	-				-0.6
2,413,372	-				-1.6
2,413,441	+				-1.9
2,413,441	+				-2.2
2,413,502	+				-0.0
2,413,502	+				-0.8
2,413,502	+				-2.2
2,413,502	+				+0.2
2,413,503	-				+1.7
2,413,503	-				-0.9
2,413,613	+		DZA65_RS11350	0.12	-0.4
2,413,614	-		DZA65_RS11350	0.12	-0.6
2,413,614	-		DZA65_RS11350	0.12	-0.3
2,413,629	+		DZA65_RS11350	0.13	-2.5
2,413,630	-		DZA65_RS11350	0.13	-0.2
2,413,639	+		DZA65_RS11350	0.14	-0.9
2,413,639	+		DZA65_RS11350	0.14	-2.1
2,413,639	+		DZA65_RS11350	0.14	+0.6
2,413,640	-		DZA65_RS11350	0.14	+0.4
2,413,648	-		DZA65_RS11350	0.14	-0.6
2,413,800	+		DZA65_RS11350	0.22	+0.4
2,413,800	+		DZA65_RS11350	0.22	+1.4
2,413,801	-		DZA65_RS11350	0.22	+1.3
2,413,837	+		DZA65_RS11350	0.24	-0.5
2,413,837	+		DZA65_RS11350	0.24	+0.8
2,413,838	-		DZA65_RS11350	0.24	+1.4
2,413,838	-		DZA65_RS11350	0.24	-0.2
2,413,885	+		DZA65_RS11350	0.26	+0.4
2,413,888	-		DZA65_RS11350	0.26	+0.9
2,413,888	-		DZA65_RS11350	0.26	-2.2
2,413,888	-		DZA65_RS11350	0.26	-0.2
2,413,888	-		DZA65_RS11350	0.26	+1.1
2,413,957	+		DZA65_RS11350	0.30	-0.7
2,413,957	+		DZA65_RS11350	0.30	+0.3
2,413,957	+		DZA65_RS11350	0.30	-0.6
2,413,957	+		DZA65_RS11350	0.30	-0.7
2,413,957	+		DZA65_RS11350	0.30	-0.4
2,413,957	+		DZA65_RS11350	0.30	+0.4
2,413,957	+		DZA65_RS11350	0.30	-1.9
2,413,957	+		DZA65_RS11350	0.30	+0.2
2,413,957	+		DZA65_RS11350	0.30	-1.0
2,413,958	-		DZA65_RS11350	0.30	-1.2
2,413,958	-		DZA65_RS11350	0.30	+1.4
2,413,958	-		DZA65_RS11350	0.30	+1.6
2,413,958	-		DZA65_RS11350	0.30	-1.4
2,413,958	-		DZA65_RS11350	0.30	-0.1
2,413,958	-		DZA65_RS11350	0.30	-0.8
2,413,958	-		DZA65_RS11350	0.30	-0.8
2,413,958	-		DZA65_RS11350	0.30	-0.8
2,413,958	-		DZA65_RS11350	0.30	+1.0
2,413,958	-		DZA65_RS11350	0.30	-3.0
2,413,958	-		DZA65_RS11350	0.30	+0.4
2,413,959	+		DZA65_RS11350	0.30	+0.1
2,413,959	+		DZA65_RS11350	0.30	-0.6
2,413,959	+		DZA65_RS11350	0.30	-0.0
2,413,975	-		DZA65_RS11350	0.31	-0.6
2,413,975	-		DZA65_RS11350	0.31	+1.2
2,413,983	-		DZA65_RS11350	0.31	-0.4
2,413,983	-		DZA65_RS11350	0.31	+0.1