Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11100

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,350,776	+		DZA65_RS11095	0.33	-0.3
2,350,777	-		DZA65_RS11095	0.33	-0.7
2,350,777	-		DZA65_RS11095	0.33	+1.3
2,350,870	+		DZA65_RS11095	0.42	+0.4
2,350,870	+		DZA65_RS11095	0.42	-2.6
2,350,870	+		DZA65_RS11095	0.42	-0.6
2,350,871	-		DZA65_RS11095	0.42	-1.2
2,350,871	-		DZA65_RS11095	0.42	-0.1
2,350,871	-		DZA65_RS11095	0.42	-0.9
2,350,955	-		DZA65_RS11095	0.50	-0.7
2,351,062	+		DZA65_RS11095	0.60	-0.2
2,351,073	+		DZA65_RS11095	0.61	+0.1
2,351,073	+		DZA65_RS11095	0.61	+0.0
2,351,073	+		DZA65_RS11095	0.61	-0.3
2,351,074	-		DZA65_RS11095	0.61	-0.3
2,351,074	-		DZA65_RS11095	0.61	+0.9
2,351,074	-		DZA65_RS11095	0.61	-1.4
2,351,078	+		DZA65_RS11095	0.62	-0.8
2,351,079	-		DZA65_RS11095	0.62	+0.7
2,351,083	+		DZA65_RS11095	0.62	-0.8
2,351,084	-		DZA65_RS11095	0.62	+0.2
2,351,143	+		DZA65_RS11095	0.68	-0.9
2,351,143	+		DZA65_RS11095	0.68	+1.3
2,351,143	+		DZA65_RS11095	0.68	+0.1
2,351,143	+		DZA65_RS11095	0.68	-1.2
2,351,144	-		DZA65_RS11095	0.68	-0.5
2,351,145	+		DZA65_RS11095	0.68	-0.1
2,351,145	+		DZA65_RS11095	0.68	-0.9
2,351,170	+		DZA65_RS11095	0.70	+0.1
2,351,170	+		DZA65_RS11095	0.70	-0.1
2,351,170	+		DZA65_RS11095	0.70	-0.5
2,351,171	-		DZA65_RS11095	0.70	+0.4
2,351,171	-		DZA65_RS11095	0.70	-1.2
2,351,171	-		DZA65_RS11095	0.70	+0.6
2,351,171	-		DZA65_RS11095	0.70	-1.2
2,351,171	-		DZA65_RS11095	0.70	-1.0
2,351,171	-		DZA65_RS11095	0.70	-0.9
2,351,292	-		DZA65_RS11095	0.82	+4.5
2,351,329	+		DZA65_RS11095	0.85	-0.2
2,351,338	+		DZA65_RS11095	0.86	-0.3
2,351,338	+		DZA65_RS11095	0.86	-1.7
2,351,338	+		DZA65_RS11095	0.86	-1.1
2,351,338	+		DZA65_RS11095	0.86	-1.9
2,351,338	+		DZA65_RS11095	0.86	+0.8
2,351,338	+		DZA65_RS11095	0.86	+0.2
2,351,339	-		DZA65_RS11095	0.86	-1.6
2,351,339	-		DZA65_RS11095	0.86	-0.2
2,351,339	-		DZA65_RS11095	0.86	+1.6
2,351,339	-		DZA65_RS11095	0.86	-0.1
2,351,339	-		DZA65_RS11095	0.86	-1.4
2,351,341	+		DZA65_RS11095	0.87	-0.7
2,351,341	+		DZA65_RS11095	0.87	+1.2
2,351,342	-		DZA65_RS11095	0.87	-0.0
2,351,479	+				+1.1
2,351,479	+				+0.5
2,351,479	+				+0.3
2,351,480	-				-0.3
2,351,544	+				-1.3
2,351,550	+				+0.6
2,351,550	+				-1.3
2,351,550	+				+0.4
2,351,550	+				-0.7
2,351,551	-				-1.7
2,351,551	-				-1.2
2,351,554	+				-0.8
2,351,555	-				-0.8
2,351,593	-				-2.2
2,351,593	-				+0.9
2,351,634	+				-1.5
2,351,645	+				+0.6
2,351,645	+				-1.3
2,351,646	-				+0.4
2,351,646	-				+0.4
2,351,646	-				+0.4
2,351,646	-				-1.6
2,351,646	-				-1.6
2,351,646	-				+0.2
2,351,811	+		DZA65_RS11100	0.18	+1.1
2,351,811	+		DZA65_RS11100	0.18	-2.6
2,351,811	+		DZA65_RS11100	0.18	-0.8
2,351,811	+		DZA65_RS11100	0.18	+1.2
2,351,811	+		DZA65_RS11100	0.18	-0.1
2,351,811	+		DZA65_RS11100	0.18	-0.2
2,351,811	+		DZA65_RS11100	0.18	-0.9
2,351,811	+		DZA65_RS11100	0.18	+0.4
2,351,811	+		DZA65_RS11100	0.18	+2.9
2,351,812	-		DZA65_RS11100	0.18	+0.0
2,351,812	-		DZA65_RS11100	0.18	+0.5
2,351,812	-		DZA65_RS11100	0.18	-1.4
2,351,812	-		DZA65_RS11100	0.18	-0.9
2,351,812	-		DZA65_RS11100	0.18	-0.9
2,351,812	-		DZA65_RS11100	0.18	+0.4
2,351,812	-		DZA65_RS11100	0.18	-0.3
2,351,814	+		DZA65_RS11100	0.18	-1.2
2,351,815	-		DZA65_RS11100	0.18	+0.4
2,351,823	+		DZA65_RS11100	0.19	+0.4
2,351,918	+		DZA65_RS11100	0.28	+0.4
2,351,918	+		DZA65_RS11100	0.28	+0.4
2,351,918	+		DZA65_RS11100	0.28	+0.4
2,351,918	+		DZA65_RS11100	0.28	+0.4
2,351,919	-		DZA65_RS11100	0.29	-0.6
2,351,919	-		DZA65_RS11100	0.29	+2.0
2,351,935	+		DZA65_RS11100	0.30	+0.2
2,351,935	+		DZA65_RS11100	0.30	-0.8
2,351,935	+		DZA65_RS11100	0.30	+1.0
2,351,936	-		DZA65_RS11100	0.30	-1.9
2,351,936	-		DZA65_RS11100	0.30	-0.2
2,351,936	-		DZA65_RS11100	0.30	-2.4
2,351,936	-		DZA65_RS11100	0.30	-1.4
2,351,950	+		DZA65_RS11100	0.32	-1.6
2,351,951	-		DZA65_RS11100	0.32	+0.6
2,351,951	-		DZA65_RS11100	0.32	-0.3
2,351,976	-		DZA65_RS11100	0.34	-0.2
2,351,995	-		DZA65_RS11100	0.36	-1.9
2,351,995	-		DZA65_RS11100	0.36	-0.2
2,352,001	-		DZA65_RS11100	0.37	+0.6
2,352,028	-		DZA65_RS11100	0.39	-2.0
2,352,099	+		DZA65_RS11100	0.47	-0.3
2,352,099	+		DZA65_RS11100	0.47	+0.8
2,352,099	+		DZA65_RS11100	0.47	+0.1
2,352,099	+		DZA65_RS11100	0.47	-0.4
2,352,099	+		DZA65_RS11100	0.47	-0.6
2,352,099	+		DZA65_RS11100	0.47	-0.6
2,352,099	+		DZA65_RS11100	0.47	-0.3
2,352,100	-		DZA65_RS11100	0.47	+0.2
2,352,100	-		DZA65_RS11100	0.47	-1.4
2,352,100	-		DZA65_RS11100	0.47	+0.1
2,352,100	-		DZA65_RS11100	0.47	-0.6
2,352,100	-		DZA65_RS11100	0.47	-0.8
2,352,120	+		DZA65_RS11100	0.49	+1.8
2,352,121	-		DZA65_RS11100	0.49	-0.1
2,352,145	-		DZA65_RS11100	0.51	-1.2
2,352,145	-		DZA65_RS11100	0.51	-0.1
2,352,234	+		DZA65_RS11100	0.60	+1.6
2,352,234	+		DZA65_RS11100	0.60	-0.2
2,352,234	+		DZA65_RS11100	0.60	-0.7
2,352,268	+		DZA65_RS11100	0.64	+0.9
2,352,268	+		DZA65_RS11100	0.64	+0.9
2,352,269	-		DZA65_RS11100	0.64	-1.1
2,352,269	-		DZA65_RS11100	0.64	-0.3
2,352,269	-		DZA65_RS11100	0.64	-0.1
2,352,269	-		DZA65_RS11100	0.64	-0.5
2,352,269	-		DZA65_RS11100	0.64	-0.1
2,352,269	-				+0.4
2,352,269	-		DZA65_RS11100	0.64	+0.4
2,352,269	-		DZA65_RS11100	0.64	-0.9
2,352,293	+		DZA65_RS11100	0.66	+2.0
2,352,315	+		DZA65_RS11100	0.68	+0.2
2,352,381	+		DZA65_RS11100	0.75	+0.2
2,352,382	-		DZA65_RS11100	0.75	+0.0
2,352,382	-		DZA65_RS11100	0.75	-0.9
2,352,471	+		DZA65_RS11100	0.84	+0.7
2,352,472	-		DZA65_RS11100	0.84	-0.6
2,352,584	-				+0.3
2,352,618	-				+0.2
2,352,629	-				-1.3
2,352,680	+				+0.3
2,352,680	+				-0.8
2,352,681	-				-1.6
2,352,681	-				-0.1
2,352,681	-				-1.4
2,352,681	-				+0.3
2,352,681	-				+0.7
2,352,698	+				+0.2
2,352,724	+				-0.7
2,352,724	+				+0.4
2,352,725	-				-0.7
2,352,725	-				-0.6
2,352,726	+				+0.6
2,352,727	-				-1.0
2,352,727	-				-1.2
2,352,727	-				-0.2
2,352,727	-				-0.5
2,352,733	+				+0.4
2,352,772	+				-1.9
2,352,773	-				+0.7
2,352,783	+				-0.1
2,352,783	+				+0.1
2,352,790	+				-0.1
2,352,791	-				+2.4
2,352,791	-				+0.6
2,352,792	+				-0.0
2,352,792	+				-1.2
2,352,792	+				-0.5
2,352,792	+				+0.0
2,352,792	+				-0.3
2,352,792	+				+0.9
2,352,792	+				-1.0
2,352,793	-				-0.7
2,352,793	-				+1.0
2,352,801	+				-1.4
2,352,801	+				-1.3
2,352,802	-				+0.7
2,352,808	+				+0.2
2,352,811	-				+0.9
2,352,840	+				-1.6
2,352,865	+		DZA65_RS11105	0.13	-0.6
2,352,866	-		DZA65_RS11105	0.13	+0.1
2,352,891	+		DZA65_RS11105	0.19	-1.6
2,352,891	+		DZA65_RS11105	0.19	-1.9
2,352,936	+		DZA65_RS11105	0.29	-1.5
2,352,937	-		DZA65_RS11105	0.29	+0.4
2,352,945	-		DZA65_RS11105	0.31	-0.7
2,352,980	-		DZA65_RS11105	0.38	+0.1
2,353,027	-		DZA65_RS11105	0.48	-0.3
2,353,119	+		DZA65_RS11105	0.68	+1.0
2,353,120	-		DZA65_RS11105	0.69	-0.9
2,353,120	-		DZA65_RS11105	0.69	-1.2
2,353,144	+		DZA65_RS11105	0.74	+0.5
2,353,144	+		DZA65_RS11105	0.74	-0.3
2,353,145	-		DZA65_RS11105	0.74	-0.1
2,353,145	-		DZA65_RS11105	0.74	+2.6
2,353,145	-		DZA65_RS11105	0.74	-0.6
2,353,146	+		DZA65_RS11105	0.74	+0.2
2,353,146	+		DZA65_RS11105	0.74	-0.6
2,353,146	+		DZA65_RS11105	0.74	-1.2
2,353,147	-		DZA65_RS11105	0.75	+0.2
2,353,152	+		DZA65_RS11105	0.76	+0.1
2,353,152	+		DZA65_RS11105	0.76	-1.2
2,353,152	+		DZA65_RS11105	0.76	+2.0
2,353,152	+		DZA65_RS11105	0.76	+0.3
2,353,152	+		DZA65_RS11105	0.76	+0.4
2,353,153	-		DZA65_RS11105	0.76	+2.1
2,353,153	-		DZA65_RS11105	0.76	+0.2
2,353,153	-		DZA65_RS11105	0.76	-0.5
2,353,187	-		DZA65_RS11105	0.83	+0.3
2,353,187	-		DZA65_RS11105	0.83	-0.2
2,353,187	-		DZA65_RS11105	0.83	+0.2
2,353,188	+		DZA65_RS11105	0.83	-0.3
2,353,188	+		DZA65_RS11105	0.83	+1.9
2,353,188	+		DZA65_RS11105	0.83	+0.0
2,353,188	+		DZA65_RS11105	0.83	-1.2
2,353,188	+		DZA65_RS11105	0.83	-1.2
2,353,188	+		DZA65_RS11105	0.83	+1.0
2,353,188	+		DZA65_RS11105	0.83	+0.4
2,353,188	+		DZA65_RS11105	0.83	-1.3
2,353,189	-		DZA65_RS11105	0.84	-0.0
2,353,189	-		DZA65_RS11105	0.84	-1.4
2,353,189	-		DZA65_RS11105	0.84	+0.6
2,353,192	+		DZA65_RS11105	0.84	+0.6
2,353,192	+		DZA65_RS11105	0.84	-1.2
2,353,193	-		DZA65_RS11105	0.85	+1.0
2,353,198	+		DZA65_RS11105	0.86	+0.6
2,353,198	+		DZA65_RS11105	0.86	+0.1
2,353,198	+		DZA65_RS11105	0.86	-1.6
2,353,199	-		DZA65_RS11105	0.86	-1.7
2,353,199	-		DZA65_RS11105	0.86	+0.4
2,353,199	-		DZA65_RS11105	0.86	-0.1
2,353,286	+				-1.0
2,353,286	+				-0.9
2,353,286	+				+1.4
2,353,287	-				+0.8
2,353,287	-				+0.1
2,353,287	-				+1.3
2,353,289	+				-0.7
2,353,317	+				-0.7
2,353,499	+		DZA65_RS11110	0.13	-1.0
2,353,500	-		DZA65_RS11110	0.13	-1.2
2,353,500	-		DZA65_RS11110	0.13	+0.9
2,353,507	-		DZA65_RS11110	0.14	+1.2
2,353,507	-		DZA65_RS11110	0.14	+1.0
2,353,507	-		DZA65_RS11110	0.14	+0.4
2,353,613	+		DZA65_RS11110	0.24	-0.0
2,353,614	-		DZA65_RS11110	0.24	+0.0
2,353,614	-		DZA65_RS11110	0.24	+0.1