Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10335

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,184,685	+				+0.7
2,184,685	+				+0.2
2,184,686	-				+0.5
2,184,686	-				-0.9
2,184,686	-				-2.4
2,184,687	+				-0.3
2,184,687	+				-1.4
2,184,743	+				-0.9
2,184,743	+				-1.9
2,184,744	-				-0.9
2,184,770	-				-0.8
2,184,775	+				+1.0
2,184,775	+				-0.1
2,184,875	+				-1.9
2,184,915	+		DZA65_RS10330	0.15	-1.0
2,184,915	+		DZA65_RS10330	0.15	+0.3
2,185,098	+		DZA65_RS10330	0.43	+1.6
2,185,098	+		DZA65_RS10330	0.43	+2.1
2,185,099	-		DZA65_RS10330	0.44	-0.8
2,185,099	-		DZA65_RS10330	0.44	+0.2
2,185,099	-		DZA65_RS10330	0.44	-0.9
2,185,099	-		DZA65_RS10330	0.44	+0.0
2,185,099	-		DZA65_RS10330	0.44	+1.1
2,185,103	+		DZA65_RS10330	0.44	+2.0
2,185,103	+		DZA65_RS10330	0.44	-1.1
2,185,104	-		DZA65_RS10330	0.44	-1.0
2,185,104	-		DZA65_RS10330	0.44	+0.3
2,185,104	-		DZA65_RS10330	0.44	-0.0
2,185,104	-		DZA65_RS10330	0.44	-0.3
2,185,179	-		DZA65_RS10330	0.56	-0.3
2,185,184	+		DZA65_RS10330	0.57	-0.5
2,185,185	-		DZA65_RS10330	0.57	-2.1
2,185,185	-		DZA65_RS10330	0.57	-1.3
2,185,185	-		DZA65_RS10330	0.57	-0.9
2,185,262	+		DZA65_RS10330	0.69	-0.1
2,185,262	+		DZA65_RS10330	0.69	+0.0
2,185,262	+		DZA65_RS10330	0.69	-0.4
2,185,262	+		DZA65_RS10330	0.69	+0.6
2,185,263	-		DZA65_RS10330	0.69	+0.9
2,185,263	-		DZA65_RS10330	0.69	+2.0
2,185,263	-		DZA65_RS10330	0.69	-0.3
2,185,263	-		DZA65_RS10330	0.69	+0.8
2,185,263	-		DZA65_RS10330	0.69	+0.3
2,185,292	+		DZA65_RS10330	0.73	-2.1
2,185,292	+		DZA65_RS10330	0.73	+0.1
2,185,292	+		DZA65_RS10330	0.73	-1.4
2,185,292	+		DZA65_RS10330	0.73	+0.5
2,185,292	+		DZA65_RS10330	0.73	-0.2
2,185,292	+		DZA65_RS10330	0.73	+0.2
2,185,292	+		DZA65_RS10330	0.73	+0.5
2,185,292	+		DZA65_RS10330	0.73	+0.1
2,185,293	-		DZA65_RS10330	0.73	-1.7
2,185,293	-		DZA65_RS10330	0.73	-0.3
2,185,293	-		DZA65_RS10330	0.73	-3.0
2,185,293	-		DZA65_RS10330	0.73	+0.9
2,185,293	-		DZA65_RS10330	0.73	-0.8
2,185,449	-				-0.0
2,185,676	-				+2.0
2,185,682	+				-0.5
2,185,682	+				-0.5
2,185,682	+				-1.9
2,185,683	-				-1.4
2,185,738	+				-0.1
2,185,738	+				-1.6
2,185,738	+				+0.7
2,185,738	+				-0.2
2,185,738	+				-1.9
2,185,738	+				-0.9
2,185,738	+				-0.4
2,185,738	+				-0.5
2,185,738	+				-1.0
2,185,739	-				+0.3
2,185,739	-				+1.5
2,185,739	-				-2.4
2,185,739	-				-0.1
2,185,739	-				+2.0
2,185,739	-				+0.5
2,185,739	-				-1.4
2,185,739	-				+0.3
2,185,739	-				-0.1
2,185,739	-				+0.2
2,185,739	-				-1.1
2,185,739	-				+0.4
2,185,849	+		DZA65_RS10335	0.17	-1.3
2,185,850	-		DZA65_RS10335	0.17	+0.3
2,185,850	-		DZA65_RS10335	0.17	+0.1
2,185,851	+		DZA65_RS10335	0.17	-1.1
2,185,851	+		DZA65_RS10335	0.17	-0.4
2,185,851	+		DZA65_RS10335	0.17	-2.1
2,185,851	+		DZA65_RS10335	0.17	+0.6
2,185,851	+		DZA65_RS10335	0.17	+0.5
2,185,851	+		DZA65_RS10335	0.17	-0.4
2,185,851	+		DZA65_RS10335	0.17	+0.2
2,185,851	+		DZA65_RS10335	0.17	+0.0
2,185,851	+		DZA65_RS10335	0.17	-0.4
2,185,851	+		DZA65_RS10335	0.17	-1.9
2,185,851	+		DZA65_RS10335	0.17	+1.2
2,185,851	+		DZA65_RS10335	0.17	-0.1
2,185,851	+		DZA65_RS10335	0.17	-1.7
2,185,851	+		DZA65_RS10335	0.17	+0.6
2,185,852	-		DZA65_RS10335	0.17	+0.1
2,185,852	-		DZA65_RS10335	0.17	+0.3
2,185,852	-		DZA65_RS10335	0.17	-0.3
2,185,852	-		DZA65_RS10335	0.17	-0.3
2,185,852	-		DZA65_RS10335	0.17	-0.1
2,185,852	-		DZA65_RS10335	0.17	-1.1
2,185,852	-		DZA65_RS10335	0.17	-0.8
2,185,852	-		DZA65_RS10335	0.17	+2.8
2,185,852	-		DZA65_RS10335	0.17	-0.2
2,185,852	-		DZA65_RS10335	0.17	+0.5
2,185,852	-		DZA65_RS10335	0.17	-1.5
2,185,852	-		DZA65_RS10335	0.17	-0.1
2,185,852	-		DZA65_RS10335	0.17	-2.5
2,185,852	-		DZA65_RS10335	0.17	-0.9
2,185,852	-		DZA65_RS10335	0.17	-0.3
2,185,852	-		DZA65_RS10335	0.17	+1.3
2,185,852	-		DZA65_RS10335	0.17	-0.4
2,185,852	-		DZA65_RS10335	0.17	-0.0
2,185,852	-				+0.5
2,185,929	+		DZA65_RS10335	0.23	+0.9
2,185,929	+		DZA65_RS10335	0.23	-1.5
2,185,930	-		DZA65_RS10335	0.24	+0.3
2,185,930	-		DZA65_RS10335	0.24	+0.1
2,185,930	-		DZA65_RS10335	0.24	-2.4
2,186,106	+		DZA65_RS10335	0.38	+1.1
2,186,107	-		DZA65_RS10335	0.38	-0.9
2,186,107	-		DZA65_RS10335	0.38	-0.7
2,186,107	-		DZA65_RS10335	0.38	-0.9
2,186,107	-		DZA65_RS10335	0.38	+0.1
2,186,107	-		DZA65_RS10335	0.38	+0.1
2,186,107	-		DZA65_RS10335	0.38	-0.9
2,186,107	-				+1.5
2,186,107	-		DZA65_RS10335	0.38	+0.1
2,186,107	-		DZA65_RS10335	0.38	+0.5
2,186,107	-		DZA65_RS10335	0.38	+0.3
2,186,107	-		DZA65_RS10335	0.38	-0.5
2,186,155	+		DZA65_RS10335	0.42	+1.6
2,186,155	+		DZA65_RS10335	0.42	-1.9
2,186,156	-		DZA65_RS10335	0.42	-1.3
2,186,156	-		DZA65_RS10335	0.42	+0.1
2,186,178	-		DZA65_RS10335	0.44	-0.3
2,186,193	+		DZA65_RS10335	0.45	-0.7
2,186,214	+		DZA65_RS10335	0.47	+0.0
2,186,214	+		DZA65_RS10335	0.47	-0.9
2,186,214	+		DZA65_RS10335	0.47	-0.7
2,186,214	+		DZA65_RS10335	0.47	-0.1
2,186,214	+		DZA65_RS10335	0.47	+0.1
2,186,215	-		DZA65_RS10335	0.47	+0.7
2,186,215	-		DZA65_RS10335	0.47	-1.1
2,186,215	-		DZA65_RS10335	0.47	+1.0
2,186,215	-		DZA65_RS10335	0.47	+1.5
2,186,278	+		DZA65_RS10335	0.52	+1.3
2,186,278	+		DZA65_RS10335	0.52	-0.8
2,186,279	-		DZA65_RS10335	0.52	-0.2
2,186,370	+		DZA65_RS10335	0.60	-0.5
2,186,370	+		DZA65_RS10335	0.60	+0.2
2,186,370	+		DZA65_RS10335	0.60	+1.0
2,186,371	-		DZA65_RS10335	0.60	+0.1
2,186,371	-		DZA65_RS10335	0.60	-1.3
2,186,371	-		DZA65_RS10335	0.60	-1.9
2,186,371	-		DZA65_RS10335	0.60	+0.8
2,186,432	+		DZA65_RS10335	0.65	-1.3
2,186,433	-		DZA65_RS10335	0.65	-1.1
2,186,433	-		DZA65_RS10335	0.65	-0.5
2,186,783	+				-0.1
2,186,814	+				-0.2
2,186,814	+				+0.5
2,186,815	-				+1.0
2,186,819	-				+0.4
2,186,881	-				-0.6
2,186,891	+				+0.0
2,186,892	-				+0.0
2,186,892	-				+0.8
2,186,892	-				-1.4
2,186,932	+				-0.9
2,186,960	-				-1.4
2,186,975	+				+0.2
2,186,976	-				+0.4
2,187,012	+				+1.5
2,187,013	-				+1.2
2,187,032	+				+1.8
2,187,032	+				-1.4
2,187,033	-				-0.3
2,187,037	+				+0.3
2,187,046	+				+0.2
2,187,046	+				-1.1
2,187,046	+				+0.0
2,187,046	+				+0.9
2,187,047	-				+0.5
2,187,047	-				+0.2
2,187,054	+				-0.7
2,187,054	+				-0.0
2,187,054	+				+0.1
2,187,056	+				-0.3
2,187,056	+				+0.4
2,187,056	+				+1.9
2,187,057	-				+0.3
2,187,057	-				-0.6
2,187,057	-				+0.6
2,187,057	-				-1.0
2,187,057	-				+0.0
2,187,057	-				-0.1
2,187,059	+				+1.0
2,187,077	+				-0.1
2,187,078	-				+0.0
2,187,261	+		DZA65_RS10340	0.17	+0.2
2,187,261	+		DZA65_RS10340	0.17	+1.8
2,187,262	-		DZA65_RS10340	0.17	+0.3
2,187,262	-		DZA65_RS10340	0.17	-0.0
2,187,262	-		DZA65_RS10340	0.17	+0.4
2,187,478	-		DZA65_RS10340	0.54	-1.9
2,187,525	+		DZA65_RS10340	0.62	+1.9
2,187,525	+		DZA65_RS10340	0.62	+0.9
2,187,525	+				+1.4
2,187,525	+		DZA65_RS10340	0.62	-2.1
2,187,525	+		DZA65_RS10340	0.62	-1.4
2,187,525	+		DZA65_RS10340	0.62	-0.4
2,187,526	-		DZA65_RS10340	0.62	+0.9
2,187,526	-		DZA65_RS10340	0.62	-0.8
2,187,526	-		DZA65_RS10340	0.62	+0.0
2,187,526	-		DZA65_RS10340	0.62	+0.1
2,187,552	+		DZA65_RS10340	0.67	-0.9
2,187,552	+		DZA65_RS10340	0.67	+0.0
2,187,553	-		DZA65_RS10340	0.67	+0.4
2,187,553	-		DZA65_RS10340	0.67	-0.3
2,187,553	-		DZA65_RS10340	0.67	-1.1
2,187,572	+		DZA65_RS10340	0.70	-0.8
2,187,572	+		DZA65_RS10340	0.70	+0.4
2,187,572	+		DZA65_RS10340	0.70	+0.0
2,187,572	+		DZA65_RS10340	0.70	-0.4
2,187,572	+		DZA65_RS10340	0.70	-0.1
2,187,572	+		DZA65_RS10340	0.70	-0.2
2,187,572	+		DZA65_RS10340	0.70	-0.6
2,187,572	+		DZA65_RS10340	0.70	-3.0
2,187,572	+		DZA65_RS10340	0.70	+1.3
2,187,572	+		DZA65_RS10340	0.70	-0.4
2,187,572	+				+0.9
2,187,572	+		DZA65_RS10340	0.70	+0.4
2,187,573	-		DZA65_RS10340	0.70	-0.6
2,187,573	-		DZA65_RS10340	0.70	+0.2
2,187,573	-		DZA65_RS10340	0.70	-0.2
2,187,573	-		DZA65_RS10340	0.70	-2.4
2,187,573	-		DZA65_RS10340	0.70	+0.7
2,187,573	-		DZA65_RS10340	0.70	+0.2
2,187,573	-		DZA65_RS10340	0.70	-1.6
2,187,573	-		DZA65_RS10340	0.70	+0.5
2,187,573	-		DZA65_RS10340	0.70	+1.3
2,187,573	-		DZA65_RS10340	0.70	-1.7
2,187,573	-		DZA65_RS10340	0.70	-0.6
2,187,590	+		DZA65_RS10340	0.73	-0.0
2,187,590	+		DZA65_RS10340	0.73	+0.3
2,187,591	-		DZA65_RS10340	0.73	+0.7
2,187,591	-		DZA65_RS10340	0.73	+0.2
2,187,591	-		DZA65_RS10340	0.73	-1.1
2,187,591	-		DZA65_RS10340	0.73	+0.6
2,187,591	-		DZA65_RS10340	0.73	+0.2
2,187,594	+		DZA65_RS10340	0.74	-3.6
2,187,594	+		DZA65_RS10340	0.74	-0.3
2,187,594	+		DZA65_RS10340	0.74	+0.6
2,187,594	+		DZA65_RS10340	0.74	-2.1
2,187,594	+		DZA65_RS10340	0.74	+0.8
2,187,594	+		DZA65_RS10340	0.74	+0.4
2,187,594	+		DZA65_RS10340	0.74	-1.4
2,187,594	+		DZA65_RS10340	0.74	-1.7
2,187,594	+		DZA65_RS10340	0.74	-2.4
2,187,594	+		DZA65_RS10340	0.74	-0.8
2,187,594	+		DZA65_RS10340	0.74	-1.6
2,187,594	+		DZA65_RS10340	0.74	-1.6
2,187,595	-		DZA65_RS10340	0.74	+1.4
2,187,595	-		DZA65_RS10340	0.74	-0.1
2,187,595	-		DZA65_RS10340	0.74	+1.4
2,187,595	-		DZA65_RS10340	0.74	-2.4
2,187,595	-		DZA65_RS10340	0.74	+1.2
2,187,595	-		DZA65_RS10340	0.74	-1.6
2,187,595	-		DZA65_RS10340	0.74	-0.7
2,187,595	-		DZA65_RS10340	0.74	+0.7
2,187,595	-		DZA65_RS10340	0.74	+0.7
2,187,596	+		DZA65_RS10340	0.74	+1.8
2,187,596	+		DZA65_RS10340	0.74	-1.6
2,187,596	+		DZA65_RS10340	0.74	+0.8
2,187,597	-		DZA65_RS10340	0.74	-0.8
2,187,597	-		DZA65_RS10340	0.74	+0.3
2,187,597	-		DZA65_RS10340	0.74	-1.2
2,187,670	-		DZA65_RS10340	0.87	-1.3
2,187,722	+				-1.1
2,187,778	+				-0.7
2,187,778	+				-0.6
2,187,778	+				-1.0
2,187,850	+		DZA65_RS10345	0.12	-0.6