Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09985

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,111,401	+		DZA65_RS09980	0.48	+0.7
2,111,401	+		DZA65_RS09980	0.48	-1.3
2,111,401	+		DZA65_RS09980	0.48	-0.6
2,111,401	+		DZA65_RS09980	0.48	+1.4
2,111,401	+		DZA65_RS09980	0.48	+0.5
2,111,401	+		DZA65_RS09980	0.48	-0.9
2,111,402	-		DZA65_RS09980	0.48	-0.4
2,111,402	-		DZA65_RS09980	0.48	-0.7
2,111,402	-		DZA65_RS09980	0.48	+0.4
2,111,402	-		DZA65_RS09980	0.48	-0.5
2,111,402	-		DZA65_RS09980	0.48	+0.1
2,111,495	+		DZA65_RS09980	0.59	+1.0
2,111,495	+		DZA65_RS09980	0.59	-0.5
2,111,495	+		DZA65_RS09980	0.59	+0.4
2,111,495	+		DZA65_RS09980	0.59	-0.8
2,111,496	-		DZA65_RS09980	0.59	+1.4
2,111,496	-		DZA65_RS09980	0.59	+0.8
2,111,577	+		DZA65_RS09980	0.68	-0.4
2,111,577	+		DZA65_RS09980	0.68	+2.0
2,111,577	+		DZA65_RS09980	0.68	-0.7
2,111,578	-		DZA65_RS09980	0.69	+0.9
2,111,578	-		DZA65_RS09980	0.69	-0.8
2,111,639	-		DZA65_RS09980	0.76	+0.4
2,111,652	+		DZA65_RS09980	0.77	-1.6
2,111,653	-		DZA65_RS09980	0.77	-0.0
2,111,653	-		DZA65_RS09980	0.77	-0.3
2,111,657	+				+0.8
2,111,691	+		DZA65_RS09980	0.82	-0.7
2,111,694	-		DZA65_RS09980	0.82	-0.0
2,111,751	+		DZA65_RS09980	0.89	-0.1
2,111,774	+				+0.0
2,111,774	+				+0.8
2,111,775	-				-0.6
2,111,818	+				-1.6
2,111,818	+				+0.0
2,111,869	-				-0.1
2,111,872	+				+0.3
2,111,886	-				+0.4
2,111,936	-				+0.4
2,112,092	+				+0.7
2,112,103	+				-0.2
2,112,103	+				+1.4
2,112,112	+				+0.6
2,112,141	-				+0.3
2,112,141	-				-0.0
2,112,149	+				+0.8
2,112,150	-				-0.0
2,112,157	+				-0.4
2,112,157	+				-1.3
2,112,161	+				-1.4
2,112,179	+				-0.9
2,112,180	-				+0.3
2,112,182	-				-3.3
2,112,182	-				-0.0
2,112,190	-				+1.4
2,112,204	+				-1.0
2,112,204	+				-0.5
2,112,205	-				-0.6
2,112,211	-				-0.6
2,112,212	+				-0.7
2,112,238	-				+0.1
2,112,242	+				-0.1
2,112,242	+				+2.0
2,112,278	-				-1.0
2,112,284	+				+0.7
2,112,284	+				-0.6
2,112,284	+				+1.2
2,112,284	+				+2.1
2,112,284	+				-0.0
2,112,284	+				-1.9
2,112,284	+				-1.1
2,112,285	-				-0.7
2,112,285	-				+1.3
2,112,286	+				-1.1
2,112,286	+				-0.1
2,112,287	-				+1.4
2,112,287	-				-0.2
2,112,287	-				+0.4
2,112,287	-				+0.4
2,112,288	+				-0.6
2,112,288	+				+0.1
2,112,289	-				+0.1
2,112,289	-				+2.4
2,112,353	+				-0.1
2,112,353	+				+0.1
2,112,353	+				-0.4
2,112,354	-				-0.4
2,112,368	-				-0.0
2,112,372	+				+0.7
2,112,373	-				+1.1
2,112,413	-				+1.5
2,112,478	+				-1.0
2,112,479	-				-0.5
2,112,535	+				-1.2
2,112,535	+				-0.4
2,112,535	+				-2.4
2,112,536	-				-0.7
2,112,536	-				-1.0
2,112,536	-				+1.5
2,112,556	+		DZA65_RS09985	0.11	-0.5
2,112,556	+		DZA65_RS09985	0.11	+0.1
2,112,556	+		DZA65_RS09985	0.11	+0.5
2,112,556	+		DZA65_RS09985	0.11	+0.5
2,112,556	+		DZA65_RS09985	0.11	-1.0
2,112,556	+		DZA65_RS09985	0.11	-0.8
2,112,556	+		DZA65_RS09985	0.11	+1.6
2,112,557	-		DZA65_RS09985	0.11	-0.5
2,112,557	-		DZA65_RS09985	0.11	+0.3
2,112,557	-		DZA65_RS09985	0.11	-0.3
2,112,557	-		DZA65_RS09985	0.11	+0.5
2,112,559	+		DZA65_RS09985	0.11	+0.8
2,112,560	-		DZA65_RS09985	0.11	+0.0
2,112,560	-		DZA65_RS09985	0.11	-0.1
2,112,620	-		DZA65_RS09985	0.14	-1.7
2,112,622	+				+0.1
2,112,622	+		DZA65_RS09985	0.15	+0.0
2,112,622	+		DZA65_RS09985	0.15	+0.2
2,112,622	+		DZA65_RS09985	0.15	-0.5
2,112,622	+		DZA65_RS09985	0.15	+0.3
2,112,850	+		DZA65_RS09985	0.27	-1.0
2,112,851	-		DZA65_RS09985	0.27	+0.7
2,112,949	+		DZA65_RS09985	0.33	-1.7
2,112,950	-		DZA65_RS09985	0.33	+0.6
2,112,950	-		DZA65_RS09985	0.33	-1.2
2,112,988	+		DZA65_RS09985	0.35	+0.1
2,112,988	+		DZA65_RS09985	0.35	-1.1
2,112,988	+		DZA65_RS09985	0.35	-0.3
2,112,989	-		DZA65_RS09985	0.35	-0.3
2,112,989	-		DZA65_RS09985	0.35	-0.9
2,112,989	-		DZA65_RS09985	0.35	-0.3
2,113,007	-		DZA65_RS09985	0.36	+0.2
2,113,017	-		DZA65_RS09985	0.37	-0.5
2,113,018	+		DZA65_RS09985	0.37	-0.9
2,113,018	+		DZA65_RS09985	0.37	-1.1
2,113,018	+		DZA65_RS09985	0.37	-1.0
2,113,018	+		DZA65_RS09985	0.37	+0.3
2,113,018	+		DZA65_RS09985	0.37	-0.3
2,113,018	+		DZA65_RS09985	0.37	-0.7
2,113,018	+		DZA65_RS09985	0.37	+0.3
2,113,018	+		DZA65_RS09985	0.37	-0.3
2,113,018	+		DZA65_RS09985	0.37	-0.8
2,113,018	+		DZA65_RS09985	0.37	+1.0
2,113,018	+		DZA65_RS09985	0.37	-0.3
2,113,018	+		DZA65_RS09985	0.37	-0.8
2,113,018	+		DZA65_RS09985	0.37	+0.2
2,113,018	+		DZA65_RS09985	0.37	-1.9
2,113,018	+		DZA65_RS09985	0.37	-0.9
2,113,018	+				+0.5
2,113,018	+		DZA65_RS09985	0.37	+1.2
2,113,019	-		DZA65_RS09985	0.37	-0.4
2,113,019	-		DZA65_RS09985	0.37	-1.4
2,113,019	-				+0.5
2,113,019	-		DZA65_RS09985	0.37	-0.5
2,113,019	-		DZA65_RS09985	0.37	-0.8
2,113,019	-		DZA65_RS09985	0.37	+1.0
2,113,019	-		DZA65_RS09985	0.37	-0.5
2,113,019	-		DZA65_RS09985	0.37	+0.5
2,113,019	-		DZA65_RS09985	0.37	+0.2
2,113,019	-		DZA65_RS09985	0.37	-0.6
2,113,019	-		DZA65_RS09985	0.37	+0.3
2,113,019	-		DZA65_RS09985	0.37	+0.5
2,113,019	-		DZA65_RS09985	0.37	-0.2
2,113,019	-		DZA65_RS09985	0.37	+0.5
2,113,108	+		DZA65_RS09985	0.42	+0.5
2,113,109	-		DZA65_RS09985	0.42	-0.2
2,113,109	-		DZA65_RS09985	0.42	+0.7
2,113,125	-		DZA65_RS09985	0.43	-1.6
2,113,224	+		DZA65_RS09985	0.49	-1.4
2,113,225	-		DZA65_RS09985	0.49	-0.3
2,113,225	-		DZA65_RS09985	0.49	-1.0
2,113,225	-		DZA65_RS09985	0.49	+0.5
2,113,225	-		DZA65_RS09985	0.49	-0.5
2,113,225	-		DZA65_RS09985	0.49	+1.0
2,113,225	-		DZA65_RS09985	0.49	-0.8
2,113,257	+		DZA65_RS09985	0.51	-1.5
2,113,490	+		DZA65_RS09985	0.64	+0.2
2,113,490	+		DZA65_RS09985	0.64	-0.9
2,113,491	-		DZA65_RS09985	0.64	-0.4
2,113,520	-		DZA65_RS09985	0.65	-1.1
2,113,520	-		DZA65_RS09985	0.65	-1.5
2,113,531	-		DZA65_RS09985	0.66	-0.2
2,113,531	-		DZA65_RS09985	0.66	-1.5
2,113,597	+		DZA65_RS09985	0.70	+0.1
2,113,597	+		DZA65_RS09985	0.70	+0.0
2,113,597	+		DZA65_RS09985	0.70	+0.6
2,113,597	+		DZA65_RS09985	0.70	+1.0
2,113,597	+		DZA65_RS09985	0.70	-0.8
2,113,597	+		DZA65_RS09985	0.70	+0.3
2,113,598	-		DZA65_RS09985	0.70	+0.9
2,113,598	-		DZA65_RS09985	0.70	-1.1
2,113,598	-		DZA65_RS09985	0.70	+0.7
2,113,598	-				-0.5
2,113,598	-		DZA65_RS09985	0.70	-1.1
2,113,598	-		DZA65_RS09985	0.70	-0.7
2,113,598	-		DZA65_RS09985	0.70	-0.5
2,113,598	-		DZA65_RS09985	0.70	-2.1
2,113,598	-		DZA65_RS09985	0.70	+0.8
2,113,625	+		DZA65_RS09985	0.71	-1.4
2,113,625	+		DZA65_RS09985	0.71	-0.5
2,113,627	+		DZA65_RS09985	0.71	+0.0
2,113,627	+		DZA65_RS09985	0.71	+0.9
2,113,627	+		DZA65_RS09985	0.71	-1.1
2,113,627	+		DZA65_RS09985	0.71	+2.3
2,113,627	+		DZA65_RS09985	0.71	+1.1
2,113,627	+		DZA65_RS09985	0.71	+0.9
2,113,628	-		DZA65_RS09985	0.72	+0.9
2,113,628	-		DZA65_RS09985	0.72	-1.0
2,113,628	-		DZA65_RS09985	0.72	-0.5
2,113,628	-		DZA65_RS09985	0.72	-1.9
2,113,628	-		DZA65_RS09985	0.72	+0.1
2,113,628	-		DZA65_RS09985	0.72	+0.9
2,113,741	+		DZA65_RS09985	0.78	-1.5
2,113,880	-		DZA65_RS09985	0.86	-1.4
2,113,880	-		DZA65_RS09985	0.86	-2.4
2,113,903	+		DZA65_RS09985	0.87	-0.5
2,113,988	+				-0.4
2,113,988	+				+0.7
2,113,988	+				-0.7
2,113,988	+				-0.3
2,113,988	+				-0.2
2,113,988	+				-1.0
2,113,988	+				+1.2
2,113,988	+				+0.1
2,113,988	+				-0.5
2,113,988	+				-0.4
2,113,989	-				+1.7
2,113,989	-				+0.5
2,113,989	-				-1.4
2,113,989	-				-0.8
2,113,989	-				+0.9
2,113,989	-				+0.9
2,113,989	-				+1.0
2,113,989	-				-0.5
2,113,989	-				-0.0
2,113,989	-				+0.6
2,113,993	-				+1.0
2,113,993	-				+0.0
2,113,993	-				-0.9
2,114,167	+				-0.5
2,114,167	+				-0.1
2,114,167	+				+0.5
2,114,167	+				+0.1
2,114,167	+				-0.1
2,114,167	+				-2.1
2,114,167	+				+1.0
2,114,167	+				-0.3
2,114,167	+				+0.1
2,114,167	+				+0.3
2,114,167	+				+0.3
2,114,168	-				-2.0
2,114,168	-				-0.8
2,114,168	-				-0.7
2,114,168	-				-1.4
2,114,168	-				+0.5
2,114,168	-				+2.0
2,114,168	-				-0.7
2,114,168	-				-0.1
2,114,168	-				-0.4
2,114,177	+				+0.0
2,114,177	+				+1.0
2,114,178	-				+0.0
2,114,178	-				-0.5
2,114,190	+				-0.5
2,114,207	-				+1.7
2,114,234	+				+0.1
2,114,234	+				+0.5
2,114,234	+				+0.1
2,114,234	+				-1.9
2,114,235	-				+0.9
2,114,235	-				+0.9
2,114,235	-				-2.0
2,114,235	-				-0.2
2,114,259	-				+0.5
2,114,300	+				+1.0
2,114,300	+				+0.8
2,114,300	+				+0.0
2,114,300	+				-0.8
2,114,300	+				-0.9
2,114,301	-				-0.3
2,114,329	+				-0.7
2,114,373	+				+0.5
2,114,373	+				+0.5
2,114,377	+				-0.3
2,114,377	+				+0.9
2,114,379	+				-1.0
2,114,379	+				-0.4
2,114,441	+				-1.4
2,114,493	+				-2.5
2,114,682	+		DZA65_RS09990	0.26	-0.3
2,114,827	+		DZA65_RS09990	0.40	-1.4
2,114,968	+		DZA65_RS09990	0.53	+1.9
2,115,073	+		DZA65_RS09990	0.62	-1.0