Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09590

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,015,792	+		DZA65_RS09585	0.35	+0.0
2,015,792	+		DZA65_RS09585	0.35	+1.5
2,015,867	-		DZA65_RS09585	0.42	-0.8
2,015,867	-		DZA65_RS09585	0.42	-1.1
2,015,867	-		DZA65_RS09585	0.42	-0.3
2,015,867	-		DZA65_RS09585	0.42	+0.6
2,015,889	-		DZA65_RS09585	0.44	-1.5
2,015,892	+		DZA65_RS09585	0.44	+1.2
2,015,892	+		DZA65_RS09585	0.44	-0.0
2,015,892	+		DZA65_RS09585	0.44	-0.5
2,015,893	-		DZA65_RS09585	0.44	+1.1
2,015,893	-		DZA65_RS09585	0.44	+0.9
2,015,903	+		DZA65_RS09585	0.45	+1.3
2,015,905	+		DZA65_RS09585	0.46	+0.2
2,015,906	-		DZA65_RS09585	0.46	-0.5
2,015,906	-		DZA65_RS09585	0.46	+0.8
2,015,906	-		DZA65_RS09585	0.46	-0.9
2,015,923	+		DZA65_RS09585	0.47	-0.5
2,015,923	+		DZA65_RS09585	0.47	-1.3
2,016,135	-		DZA65_RS09585	0.67	+0.5
2,016,200	+		DZA65_RS09585	0.73	-2.3
2,016,201	-		DZA65_RS09585	0.73	+1.8
2,016,201	-		DZA65_RS09585	0.73	-0.4
2,016,215	-		DZA65_RS09585	0.74	-1.4
2,016,293	-		DZA65_RS09585	0.81	+0.6
2,016,384	+		DZA65_RS09585	0.90	-0.1
2,016,385	-		DZA65_RS09585	0.90	-0.1
2,016,385	-		DZA65_RS09585	0.90	+2.8
2,016,385	-		DZA65_RS09585	0.90	+0.5
2,016,385	-		DZA65_RS09585	0.90	-0.9
2,016,385	-		DZA65_RS09585	0.90	+0.1
2,016,387	+				+0.2
2,016,387	+				-0.4
2,016,387	+				-1.2
2,016,387	+				+1.5
2,016,387	+				-0.8
2,016,388	-				+1.3
2,016,388	-				-0.5
2,016,388	-				+0.8
2,016,466	-				-0.0
2,016,488	+				+0.5
2,016,488	+				+0.7
2,016,489	-				-1.4
2,016,489	-				+1.5
2,016,528	-				+0.5
2,016,528	-				-1.5
2,016,528	-				-0.7
2,016,528	-				-0.3
2,016,573	+				-0.3
2,016,575	+				+0.8
2,016,604	+				+0.1
2,016,604	+				+0.1
2,016,604	+				+0.2
2,016,605	-				-0.5
2,016,605	-				-0.2
2,016,605	-				-0.9
2,016,605	-				-0.5
2,016,605	-				-0.7
2,016,607	+				+2.5
2,016,607	+				+1.2
2,016,607	+				-1.1
2,016,607	+				-0.8
2,016,608	-				-0.2
2,016,608	-				+0.0
2,016,608	-				-0.5
2,016,612	+				+0.8
2,016,612	+				+0.5
2,016,613	-				+0.6
2,016,738	+		DZA65_RS09590	0.16	+1.1
2,016,738	+		DZA65_RS09590	0.16	-0.2
2,016,739	-		DZA65_RS09590	0.16	+0.5
2,016,739	-		DZA65_RS09590	0.16	+1.3
2,016,797	+		DZA65_RS09590	0.23	+0.5
2,016,878	+		DZA65_RS09590	0.32	+0.1
2,016,878	+		DZA65_RS09590	0.32	+0.1
2,016,879	-		DZA65_RS09590	0.32	+0.1
2,016,879	-		DZA65_RS09590	0.32	+0.1
2,016,879	-		DZA65_RS09590	0.32	+0.8
2,016,879	-		DZA65_RS09590	0.32	-0.4
2,016,879	-		DZA65_RS09590	0.32	+0.5
2,016,879	-		DZA65_RS09590	0.32	-0.8
2,016,889	+		DZA65_RS09590	0.33	+0.5
2,016,889	+		DZA65_RS09590	0.33	-0.2
2,016,903	-		DZA65_RS09590	0.35	-1.8
2,016,903	-		DZA65_RS09590	0.35	-0.5
2,016,965	+		DZA65_RS09590	0.42	-1.6
2,016,965	+		DZA65_RS09590	0.42	-0.7
2,016,965	+		DZA65_RS09590	0.42	+0.9
2,016,965	+		DZA65_RS09590	0.42	+1.0
2,016,965	+		DZA65_RS09590	0.42	-2.5
2,016,965	+		DZA65_RS09590	0.42	-0.3
2,016,965	+		DZA65_RS09590	0.42	-1.5
2,016,966	-				+0.5
2,016,966	-		DZA65_RS09590	0.42	-0.5
2,016,966	-		DZA65_RS09590	0.42	+0.8
2,016,966	-		DZA65_RS09590	0.42	-0.1
2,016,976	+		DZA65_RS09590	0.43	-0.1
2,016,976	+		DZA65_RS09590	0.43	+1.1
2,016,976	+		DZA65_RS09590	0.43	+0.5
2,017,387	+		DZA65_RS09590	0.90	+1.1
2,017,388	-		DZA65_RS09590	0.90	-0.8
2,017,388	-		DZA65_RS09590	0.90	+1.9
2,017,388	-		DZA65_RS09590	0.90	+0.2
2,017,394	+				-0.1
2,017,394	+				-0.5
2,017,394	+				+0.1
2,017,394	+				-0.2
2,017,395	-				-0.4
2,017,395	-				-0.3
2,017,472	-				+0.1
2,017,472	-				+0.7
2,017,472	-				-1.1
2,017,475	+				-0.1
2,017,475	+				+0.6
2,017,476	-				+0.2
2,017,476	-				+1.5
2,017,476	-				-0.4
2,017,531	+				-0.3
2,017,531	+				-1.5
2,017,531	+				+0.8
2,017,532	-				-0.5
2,017,548	+				+0.5
2,017,548	+				+0.3
2,017,549	-				+0.5
2,017,561	+				+0.7
2,017,561	+				+1.6
2,017,561	+				-0.6
2,017,561	+				-0.3
2,017,562	-				-0.6
2,017,562	-				+0.2
2,017,562	-				+1.1
2,017,562	-				-0.1
2,017,562	-				-0.1
2,017,562	-				+0.3
2,017,563	+				+1.5
2,017,564	-				-1.0
2,017,603	+				-0.1
2,017,603	+				-0.6
2,017,604	-				+0.4
2,017,604	-				-1.3
2,017,639	+				-0.3
2,017,639	+				+0.1
2,017,640	-				-1.1
2,017,836	+		DZA65_RS09595	0.13	-1.0
2,017,837	-		DZA65_RS09595	0.13	-0.1
2,017,903	-		DZA65_RS09595	0.18	+0.2
2,017,914	+		DZA65_RS09595	0.19	-0.9
2,017,915	-		DZA65_RS09595	0.19	+0.5
2,017,915	-		DZA65_RS09595	0.19	-2.3
2,017,953	+				-1.1
2,017,953	+		DZA65_RS09595	0.21	+1.5
2,017,954	-		DZA65_RS09595	0.21	-2.8
2,017,954	-		DZA65_RS09595	0.21	-0.8
2,017,954	-		DZA65_RS09595	0.21	+0.3
2,017,954	-		DZA65_RS09595	0.21	-2.1
2,017,960	-		DZA65_RS09595	0.22	-1.8
2,017,960	-		DZA65_RS09595	0.22	+0.1
2,017,960	-		DZA65_RS09595	0.22	-0.5
2,018,085	+		DZA65_RS09595	0.30	+0.7
2,018,085	+		DZA65_RS09595	0.30	+0.2
2,018,085	+		DZA65_RS09595	0.30	+1.8
2,018,085	+		DZA65_RS09595	0.30	-0.3
2,018,085	+		DZA65_RS09595	0.30	-0.0
2,018,085	+		DZA65_RS09595	0.30	+0.8
2,018,086	-		DZA65_RS09595	0.30	-2.8
2,018,086	-		DZA65_RS09595	0.30	-0.3
2,018,086	-		DZA65_RS09595	0.30	+1.1
2,018,151	-		DZA65_RS09595	0.35	-0.1
2,018,151	-		DZA65_RS09595	0.35	-1.0
2,018,194	+		DZA65_RS09595	0.38	+0.7
2,018,222	+		DZA65_RS09595	0.39	-1.0
2,018,222	+		DZA65_RS09595	0.39	-2.1
2,018,222	+		DZA65_RS09595	0.39	-0.5
2,018,223	-		DZA65_RS09595	0.40	+1.1
2,018,223	-		DZA65_RS09595	0.40	-1.1
2,018,357	+		DZA65_RS09595	0.49	+0.9
2,018,357	+		DZA65_RS09595	0.49	-0.8
2,018,357	+		DZA65_RS09595	0.49	+0.7
2,018,358	-		DZA65_RS09595	0.49	-1.1
2,018,358	-		DZA65_RS09595	0.49	-1.8
2,018,358	-		DZA65_RS09595	0.49	-0.8
2,018,358	-		DZA65_RS09595	0.49	-0.1
2,018,406	+		DZA65_RS09595	0.52	-0.5
2,018,406	+		DZA65_RS09595	0.52	-1.5
2,018,406	+		DZA65_RS09595	0.52	-1.4
2,018,406	+		DZA65_RS09595	0.52	+0.2
2,018,408	+		DZA65_RS09595	0.52	-0.2
2,018,409	-		DZA65_RS09595	0.52	-0.2
2,018,445	+		DZA65_RS09595	0.55	+0.6
2,018,445	+		DZA65_RS09595	0.55	-0.3