Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09110

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,917,864	-		DZA65_RS09105	0.29	+2.0
1,917,864	-		DZA65_RS09105	0.29	+0.8
1,917,939	-		DZA65_RS09105	0.35	+0.5
1,917,939	-		DZA65_RS09105	0.35	+1.4
1,917,955	+		DZA65_RS09105	0.36	+0.3
1,917,955	+		DZA65_RS09105	0.36	+0.5
1,917,955	+		DZA65_RS09105	0.36	-1.0
1,917,956	-		DZA65_RS09105	0.36	+3.6
1,917,956	-		DZA65_RS09105	0.36	+0.1
1,917,956	-		DZA65_RS09105	0.36	+1.6
1,918,109	+		DZA65_RS09105	0.49	-1.3
1,918,120	+		DZA65_RS09105	0.50	+0.9
1,918,120	+		DZA65_RS09105	0.50	-0.7
1,918,121	-		DZA65_RS09105	0.50	-0.2
1,918,121	-		DZA65_RS09105	0.50	-0.1
1,918,121	-		DZA65_RS09105	0.50	+0.0
1,918,157	-		DZA65_RS09105	0.53	-0.7
1,918,349	+		DZA65_RS09105	0.68	+0.8
1,918,421	+		DZA65_RS09105	0.74	+0.1
1,918,422	-		DZA65_RS09105	0.74	+0.3
1,918,422	-		DZA65_RS09105	0.74	-0.3
1,918,422	-		DZA65_RS09105	0.74	+0.3
1,918,442	+		DZA65_RS09105	0.76	-0.7
1,918,699	+				+0.3
1,918,705	+				+0.5
1,918,706	-				-1.8
1,918,756	+				-0.7
1,918,756	+				+2.4
1,918,762	+				-0.4
1,918,762	+				-0.7
1,918,763	-				-0.8
1,918,784	-				+1.4
1,918,817	-				+0.9
1,918,817	-				+0.3
1,918,817	-				-0.2
1,918,842	+				-0.8
1,918,843	-				-0.0
1,918,843	-				-1.1
1,918,941	+				-0.6
1,918,941	+				+0.5
1,918,941	+				+0.7
1,918,941	+				+0.1
1,918,983	+				-0.4
1,918,983	+				+0.1
1,918,983	+				-0.4
1,918,983	+				+0.1
1,918,985	+				+0.3
1,918,985	+				-0.3
1,918,985	+				+0.7
1,918,985	+				+0.3
1,918,985	+				+0.7
1,918,985	+				-0.6
1,918,986	-				+0.9
1,918,986	-				+0.7
1,918,986	-				-1.3
1,918,986	-				+1.3
1,918,986	-				-0.5
1,918,986	-				-0.6
1,918,986	-				-0.2
1,919,021	+		DZA65_RS09110	0.10	-0.5
1,919,021	+		DZA65_RS09110	0.10	+1.4
1,919,021	+		DZA65_RS09110	0.10	-2.7
1,919,021	+		DZA65_RS09110	0.10	-0.7
1,919,021	+		DZA65_RS09110	0.10	-0.2
1,919,022	-		DZA65_RS09110	0.10	+0.4
1,919,022	-		DZA65_RS09110	0.10	+0.6
1,919,022	-		DZA65_RS09110	0.10	-1.1
1,919,022	-		DZA65_RS09110	0.10	-1.1
1,919,025	+		DZA65_RS09110	0.10	-0.1
1,919,025	+		DZA65_RS09110	0.10	+0.9
1,919,025	+		DZA65_RS09110	0.10	-1.1
1,919,025	+		DZA65_RS09110	0.10	-0.1
1,919,025	+		DZA65_RS09110	0.10	-0.8
1,919,026	-		DZA65_RS09110	0.10	-1.1
1,919,026	-		DZA65_RS09110	0.10	+0.3
1,919,026	-		DZA65_RS09110	0.10	-0.1
1,919,115	+		DZA65_RS09110	0.16	+0.7
1,919,115	+		DZA65_RS09110	0.16	+0.3
1,919,116	-		DZA65_RS09110	0.16	-0.6
1,919,116	-		DZA65_RS09110	0.16	-0.5
1,919,116	-		DZA65_RS09110	0.16	+0.5
1,919,116	-		DZA65_RS09110	0.16	-0.5
1,919,116	-		DZA65_RS09110	0.16	+0.2
1,919,132	+		DZA65_RS09110	0.17	+5.3
1,919,132	+		DZA65_RS09110	0.17	+0.3
1,919,154	-		DZA65_RS09110	0.18	+0.2
1,919,238	+		DZA65_RS09110	0.24	+2.5
1,919,262	+		DZA65_RS09110	0.25	-1.5
1,919,262	+		DZA65_RS09110	0.25	+0.8
1,919,262	+		DZA65_RS09110	0.25	+1.3
1,919,262	+		DZA65_RS09110	0.25	+1.8
1,919,263	-		DZA65_RS09110	0.25	-0.2
1,919,263	-		DZA65_RS09110	0.25	+0.5
1,919,263	-		DZA65_RS09110	0.25	-2.2
1,919,263	-		DZA65_RS09110	0.25	-0.1
1,919,263	-		DZA65_RS09110	0.25	-0.1
1,919,263	-		DZA65_RS09110	0.25	-0.1
1,919,325	+		DZA65_RS09110	0.29	-1.8
1,919,325	+		DZA65_RS09110	0.29	-2.3
1,919,325	+		DZA65_RS09110	0.29	+1.0
1,919,339	+		DZA65_RS09110	0.30	+0.2
1,919,386	-		DZA65_RS09110	0.33	+0.9
1,919,412	+		DZA65_RS09110	0.35	-0.4
1,919,413	-		DZA65_RS09110	0.35	-0.0
1,919,413	-		DZA65_RS09110	0.35	-2.5
1,919,413	-		DZA65_RS09110	0.35	+0.1
1,919,496	+		DZA65_RS09110	0.40	-1.3
1,919,539	-		DZA65_RS09110	0.43	+0.5
1,919,671	+		DZA65_RS09110	0.51	-1.8
1,919,671	+		DZA65_RS09110	0.51	-0.4
1,919,671	+		DZA65_RS09110	0.51	-2.8
1,919,671	+		DZA65_RS09110	0.51	-0.5
1,919,671	+		DZA65_RS09110	0.51	-0.5
1,919,671	+		DZA65_RS09110	0.51	-1.3
1,919,671	+		DZA65_RS09110	0.51	-0.8
1,919,672	-		DZA65_RS09110	0.51	-1.8
1,919,672	-		DZA65_RS09110	0.51	-0.5
1,919,672	-		DZA65_RS09110	0.51	-2.2
1,919,672	-		DZA65_RS09110	0.51	-0.4
1,919,672	-		DZA65_RS09110	0.51	+0.3
1,919,672	-		DZA65_RS09110	0.51	-0.3
1,919,796	-		DZA65_RS09110	0.59	+0.3
1,919,810	+		DZA65_RS09110	0.60	-1.7
1,919,869	+		DZA65_RS09110	0.63	+0.9
1,919,870	-		DZA65_RS09110	0.63	-0.5
1,919,870	-		DZA65_RS09110	0.63	-1.7
1,919,898	+		DZA65_RS09110	0.65	-0.8
1,919,898	+		DZA65_RS09110	0.65	-0.5
1,919,899	-		DZA65_RS09110	0.65	-1.0
1,919,899	-		DZA65_RS09110	0.65	-1.5
1,919,899	-		DZA65_RS09110	0.65	-0.7
1,919,899	-		DZA65_RS09110	0.65	-0.9
1,919,904	+		DZA65_RS09110	0.66	+0.9
1,919,905	-		DZA65_RS09110	0.66	+0.8
1,919,997	+		DZA65_RS09110	0.71	-1.8
1,919,997	+		DZA65_RS09110	0.71	-0.8
1,919,997	+		DZA65_RS09110	0.71	-0.3
1,919,998	-		DZA65_RS09110	0.71	-0.5
1,919,998	-		DZA65_RS09110	0.71	+1.1
1,920,093	+		DZA65_RS09110	0.77	-1.1
1,920,094	-		DZA65_RS09110	0.77	-0.8
1,920,189	-		DZA65_RS09110	0.83	-0.3
1,920,248	+		DZA65_RS09110	0.87	-1.1
1,920,249	-		DZA65_RS09110	0.87	-0.6
1,920,249	-		DZA65_RS09110	0.87	-1.2
1,920,258	-		DZA65_RS09110	0.88	+1.7
1,920,301	+				+0.1
1,920,301	+				+0.2
1,920,301	+				+0.5
1,920,301	+				-0.0
1,920,301	+				-2.3
1,920,301	+				+0.7
1,920,302	-				+0.5
1,920,302	-				+2.1
1,920,302	-				-1.1
1,920,302	-				+0.5
1,920,302	-				-0.8
1,920,302	-				-1.5
1,920,302	-				-0.2
1,920,302	-				+1.5
1,920,302	-				-2.1
1,920,510	-				+2.4
1,920,519	-				+0.2
1,920,519	-				+0.4
1,920,519	-				-0.3
1,920,596	+				-0.2
1,920,597	-				-0.3
1,920,597	-				+0.2
1,920,597	-				-0.9
1,920,615	+				-0.2
1,920,615	+				-0.1
1,920,616	-				-1.1
1,920,630	+				+0.9
1,920,630	+				-0.7
1,920,630	+				-0.3
1,920,630	+				-0.9
1,920,630	+				-1.1
1,920,631	-				+1.1
1,920,631	-				+0.3
1,920,631	-				-0.5
1,920,641	+				+0.5
1,920,642	-				-0.5
1,920,706	+				+0.5
1,920,707	-				-0.4
1,920,707	-				-0.4
1,920,707	-				-1.9
1,920,707	-				-1.1
1,920,707	-				-0.8
1,920,713	+				-0.8
1,920,713	+				-0.8
1,920,713	+				+0.5
1,920,713	+				+0.2
1,920,713	+				-0.5
1,920,713	+				-0.7
1,920,713	+				+0.9
1,920,713	+				+0.3
1,920,713	+				-2.3
1,920,713	+				+0.0
1,920,714	-				+1.3
1,920,714	-				-0.3
1,920,714	-				-1.5
1,920,714	-				+0.4
1,920,714	-				+1.1
1,920,714	-				-0.7
1,920,714	-				+1.5
1,920,714	-				+0.4
1,920,714	-				+0.9
1,920,714	-				-0.5
1,920,714	-				-0.5
1,920,714	-				-1.8
1,920,769	+		DZA65_RS09115	0.15	+0.2
1,920,769	+		DZA65_RS09115	0.15	+0.5
1,920,769	+		DZA65_RS09115	0.15	-0.0
1,920,769	+		DZA65_RS09115	0.15	-0.0
1,920,989	-		DZA65_RS09115	0.38	-0.7
1,921,266	+		DZA65_RS09115	0.68	-0.5
1,921,267	-		DZA65_RS09115	0.68	+0.2
1,921,267	-		DZA65_RS09115	0.68	-1.1
1,921,267	-				+1.8
1,921,345	+		DZA65_RS09115	0.76	+0.5
1,921,359	+		DZA65_RS09115	0.78	+0.3
1,921,360	-		DZA65_RS09115	0.78	-1.8
1,921,360	-		DZA65_RS09115	0.78	+1.0
1,921,396	+		DZA65_RS09115	0.82	-0.8
1,921,396	+		DZA65_RS09115	0.82	-1.8
1,921,396	+		DZA65_RS09115	0.82	+1.4
1,921,397	-		DZA65_RS09115	0.82	-0.5
1,921,397	-		DZA65_RS09115	0.82	+0.2
1,921,397	-		DZA65_RS09115	0.82	-0.2
1,921,397	-				-0.8
1,921,432	+		DZA65_RS09115	0.86	-0.3
1,921,432	+		DZA65_RS09115	0.86	-1.8
1,921,433	-		DZA65_RS09115	0.86	-0.5
1,921,433	-		DZA65_RS09115	0.86	-0.3
1,921,433	-		DZA65_RS09115	0.86	-0.5
1,921,433	-		DZA65_RS09115	0.86	+0.1
1,921,433	-		DZA65_RS09115	0.86	-0.7
1,921,433	-		DZA65_RS09115	0.86	+0.5