Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08900

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,874,237	+				-2.1
1,874,247	+				+0.3
1,874,248	-				-0.6
1,874,248	-				+0.1
1,874,248	-				+1.5
1,874,262	+				+0.7
1,874,262	+				+0.3
1,874,263	-				-1.9
1,874,263	-				+0.3
1,874,263	-				+0.5
1,874,263	-				+0.2
1,874,263	-				+0.1
1,874,391	-				+0.0
1,874,453	-				-1.8
1,874,463	+				-1.1
1,874,463	+				+1.4
1,874,464	-				-0.1
1,874,464	-				+0.5
1,874,464	-				+0.3
1,874,482	+				+0.1
1,874,482	+				-1.2
1,874,482	+				+0.2
1,874,482	+				-1.8
1,874,482	+				+1.8
1,874,483	-				-0.2
1,874,483	-				-2.8
1,874,483	-				+0.5
1,874,483	-				-1.1
1,874,505	+				+0.5
1,874,517	-				-0.7
1,874,517	-				-0.4
1,874,588	-				+0.1
1,874,847	-		DZA65_RS08895	0.18	-0.6
1,874,873	-		DZA65_RS08895	0.25	+0.5
1,874,873	-		DZA65_RS08895	0.25	+0.7
1,874,885	-		DZA65_RS08895	0.28	-0.1
1,874,963	-		DZA65_RS08895	0.51	+2.1
1,874,981	+		DZA65_RS08895	0.56	+0.3
1,874,981	+		DZA65_RS08895	0.56	-1.5
1,874,981	+		DZA65_RS08895	0.56	+0.2
1,874,982	-		DZA65_RS08895	0.56	+0.4
1,875,103	+				-0.8
1,875,284	-				+0.1
1,875,311	-				-0.7
1,875,314	-				+2.4
1,875,317	-				+0.1
1,875,317	-				-0.1
1,875,317	-				-0.2
1,875,337	-				+0.5
1,875,361	+				+0.1
1,875,368	+				-0.8
1,875,419	+				+0.8
1,875,419	+				+2.8
1,875,419	+				-0.4
1,875,420	-				-0.5
1,875,420	-				+5.9
1,875,420	-				-0.1
1,875,420	-				-0.8
1,875,422	-				+1.1
1,875,450	-				-1.1
1,875,478	+		DZA65_RS08900	0.11	-2.6
1,875,478	+		DZA65_RS08900	0.11	+1.3
1,875,478	+		DZA65_RS08900	0.11	-0.1
1,875,478	+		DZA65_RS08900	0.11	-1.1
1,875,479	-		DZA65_RS08900	0.11	+1.2
1,875,479	-		DZA65_RS08900	0.11	-1.1
1,875,497	+		DZA65_RS08900	0.12	-1.8
1,875,497	+		DZA65_RS08900	0.12	+0.5
1,875,497	+		DZA65_RS08900	0.12	+1.5
1,875,497	+		DZA65_RS08900	0.12	+0.0
1,875,497	+		DZA65_RS08900	0.12	-0.5
1,875,497	+		DZA65_RS08900	0.12	+1.7
1,875,498	-		DZA65_RS08900	0.12	-0.3
1,875,498	-		DZA65_RS08900	0.12	-0.3
1,875,664	+		DZA65_RS08900	0.20	+1.4
1,875,664	+		DZA65_RS08900	0.20	-0.5
1,875,664	+		DZA65_RS08900	0.20	+2.0
1,875,754	+		DZA65_RS08900	0.24	-1.1
1,875,761	-		DZA65_RS08900	0.24	-0.6
1,875,761	-		DZA65_RS08900	0.24	+0.5
1,875,761	-		DZA65_RS08900	0.24	-0.9
1,875,761	-		DZA65_RS08900	0.24	+0.2
1,875,766	+		DZA65_RS08900	0.24	-0.2
1,875,766	+		DZA65_RS08900	0.24	+0.0
1,875,766	+		DZA65_RS08900	0.24	-1.1
1,875,767	-		DZA65_RS08900	0.24	-0.2
1,875,767	-		DZA65_RS08900	0.24	-1.2
1,875,767	-		DZA65_RS08900	0.24	-0.5
1,875,767	-		DZA65_RS08900	0.24	+0.1
1,875,805	+		DZA65_RS08900	0.26	+0.2
1,875,854	+		DZA65_RS08900	0.28	-0.5
1,875,854	+		DZA65_RS08900	0.28	+1.1
1,875,854	+		DZA65_RS08900	0.28	+0.5
1,875,854	+		DZA65_RS08900	0.28	-2.6
1,875,854	+		DZA65_RS08900	0.28	-0.8
1,875,855	-		DZA65_RS08900	0.28	-0.8
1,875,859	+		DZA65_RS08900	0.28	-0.2
1,875,860	-		DZA65_RS08900	0.28	+0.7
1,875,883	+		DZA65_RS08900	0.29	-1.5
1,875,916	+		DZA65_RS08900	0.31	-0.3
1,875,932	+		DZA65_RS08900	0.32	+0.3
1,875,932	+		DZA65_RS08900	0.32	+2.1
1,875,933	-		DZA65_RS08900	0.32	+2.8
1,875,934	+		DZA65_RS08900	0.32	-0.9
1,875,935	-		DZA65_RS08900	0.32	+0.5
1,875,935	-		DZA65_RS08900	0.32	-0.2
1,875,950	-		DZA65_RS08900	0.32	+0.4
1,875,972	+		DZA65_RS08900	0.33	+0.1
1,875,972	+		DZA65_RS08900	0.33	-1.1
1,875,973	-		DZA65_RS08900	0.33	-2.5
1,875,973	-		DZA65_RS08900	0.33	-0.1
1,876,046	+		DZA65_RS08900	0.37	+0.1
1,876,046	+		DZA65_RS08900	0.37	-0.1
1,876,046	+		DZA65_RS08900	0.37	+2.1
1,876,047	-		DZA65_RS08900	0.37	-0.9
1,876,048	+		DZA65_RS08900	0.37	-2.1
1,876,048	+		DZA65_RS08900	0.37	+0.5
1,876,048	+		DZA65_RS08900	0.37	-0.1
1,876,049	-		DZA65_RS08900	0.37	+0.5
1,876,049	-		DZA65_RS08900	0.37	+0.6
1,876,061	+		DZA65_RS08900	0.37	-0.1
1,876,061	+		DZA65_RS08900	0.37	-0.8
1,876,061	+		DZA65_RS08900	0.37	+0.4
1,876,061	+		DZA65_RS08900	0.37	+0.2
1,876,061	+		DZA65_RS08900	0.37	-1.6
1,876,062	-		DZA65_RS08900	0.37	-1.8
1,876,062	-		DZA65_RS08900	0.37	+1.3
1,876,062	-		DZA65_RS08900	0.37	+2.5
1,876,070	-		DZA65_RS08900	0.38	-0.4
1,876,111	+		DZA65_RS08900	0.39	-2.6
1,876,112	-		DZA65_RS08900	0.40	-0.6
1,876,139	+		DZA65_RS08900	0.41	-0.1
1,876,139	+		DZA65_RS08900	0.41	+0.3
1,876,139	+		DZA65_RS08900	0.41	+0.5
1,876,140	-		DZA65_RS08900	0.41	+0.5
1,876,140	-		DZA65_RS08900	0.41	-1.0
1,876,161	+		DZA65_RS08900	0.42	-2.6
1,876,161	+		DZA65_RS08900	0.42	+0.0
1,876,161	+				+2.5
1,876,162	-		DZA65_RS08900	0.42	-0.5
1,876,184	+		DZA65_RS08900	0.43	+0.3
1,876,199	+		DZA65_RS08900	0.43	+0.1
1,876,200	-		DZA65_RS08900	0.43	-1.5
1,876,206	+		DZA65_RS08900	0.44	+0.5
1,876,206	+		DZA65_RS08900	0.44	-0.8
1,876,207	-		DZA65_RS08900	0.44	+1.3
1,876,207	-		DZA65_RS08900	0.44	-1.0
1,876,207	-		DZA65_RS08900	0.44	+0.7
1,876,207	-		DZA65_RS08900	0.44	+1.2
1,876,275	-		DZA65_RS08900	0.47	+0.3
1,876,290	+		DZA65_RS08900	0.47	+0.1
1,876,290	+		DZA65_RS08900	0.47	+0.3
1,876,290	+		DZA65_RS08900	0.47	-1.2
1,876,290	+		DZA65_RS08900	0.47	+0.9
1,876,291	-		DZA65_RS08900	0.48	-1.2
1,876,291	-		DZA65_RS08900	0.48	+0.1
1,876,291	-		DZA65_RS08900	0.48	-1.5
1,876,291	-		DZA65_RS08900	0.48	-2.1
1,876,291	-		DZA65_RS08900	0.48	+1.2
1,876,291	-		DZA65_RS08900	0.48	-1.8
1,876,291	-		DZA65_RS08900	0.48	+0.4
1,876,328	+		DZA65_RS08900	0.49	-1.1
1,876,329	-		DZA65_RS08900	0.49	+1.6
1,876,352	+		DZA65_RS08900	0.50	+0.4
1,876,352	+		DZA65_RS08900	0.50	+0.1
1,876,352	+		DZA65_RS08900	0.50	+0.2
1,876,352	+		DZA65_RS08900	0.50	-0.1
1,876,352	+		DZA65_RS08900	0.50	+0.4
1,876,353	-		DZA65_RS08900	0.50	-0.3
1,876,353	-		DZA65_RS08900	0.50	-0.2
1,876,353	-		DZA65_RS08900	0.50	-2.1
1,876,353	-		DZA65_RS08900	0.50	+0.5
1,876,353	-		DZA65_RS08900	0.50	+0.1
1,876,353	-		DZA65_RS08900	0.50	-0.8
1,876,364	+		DZA65_RS08900	0.51	-0.5
1,876,364	+		DZA65_RS08900	0.51	+0.5
1,876,364	+		DZA65_RS08900	0.51	-0.6
1,876,364	+		DZA65_RS08900	0.51	-0.7
1,876,364	+		DZA65_RS08900	0.51	-1.2
1,876,364	+		DZA65_RS08900	0.51	+1.0
1,876,365	-		DZA65_RS08900	0.51	-0.2
1,876,365	-		DZA65_RS08900	0.51	-0.1
1,876,365	-		DZA65_RS08900	0.51	-0.2
1,876,373	+		DZA65_RS08900	0.51	-0.3
1,876,373	+		DZA65_RS08900	0.51	-0.2
1,876,373	+		DZA65_RS08900	0.51	-1.6
1,876,377	-		DZA65_RS08900	0.51	-0.6
1,876,395	+		DZA65_RS08900	0.52	-0.5
1,876,395	+		DZA65_RS08900	0.52	-1.2
1,876,395	+		DZA65_RS08900	0.52	+0.3
1,876,396	-		DZA65_RS08900	0.52	-0.1
1,876,430	-		DZA65_RS08900	0.54	-0.5
1,876,430	-		DZA65_RS08900	0.54	-1.8
1,876,490	+		DZA65_RS08900	0.56	+1.4
1,876,490	+		DZA65_RS08900	0.56	-1.1
1,876,491	-		DZA65_RS08900	0.56	-0.5
1,876,491	-		DZA65_RS08900	0.56	+1.3
1,876,494	+		DZA65_RS08900	0.57	+0.9
1,876,494	+		DZA65_RS08900	0.57	-0.2
1,876,494	+		DZA65_RS08900	0.57	+0.2
1,876,494	+		DZA65_RS08900	0.57	+1.3
1,876,494	+		DZA65_RS08900	0.57	-2.3
1,876,494	+		DZA65_RS08900	0.57	-1.1
1,876,495	-		DZA65_RS08900	0.57	-1.5
1,876,495	-		DZA65_RS08900	0.57	-2.5
1,876,559	-		DZA65_RS08900	0.60	-0.7
1,876,603	+		DZA65_RS08900	0.61	+0.5
1,876,604	-		DZA65_RS08900	0.62	+1.2
1,876,604	-		DZA65_RS08900	0.62	+0.1
1,876,612	+		DZA65_RS08900	0.62	+0.3
1,876,612	+		DZA65_RS08900	0.62	+0.4
1,876,612	+		DZA65_RS08900	0.62	-2.1
1,876,612	+		DZA65_RS08900	0.62	-0.4
1,876,615	+		DZA65_RS08900	0.62	+0.8
1,876,615	+		DZA65_RS08900	0.62	+1.1
1,876,677	+		DZA65_RS08900	0.65	+1.2
1,876,678	-		DZA65_RS08900	0.65	-0.0
1,876,679	+		DZA65_RS08900	0.65	-0.6
1,876,679	+		DZA65_RS08900	0.65	-0.9
1,876,679	+		DZA65_RS08900	0.65	-1.1
1,876,680	-		DZA65_RS08900	0.65	-0.7
1,876,680	-		DZA65_RS08900	0.65	-1.5
1,876,680	-		DZA65_RS08900	0.65	-0.8
1,876,680	-		DZA65_RS08900	0.65	+0.3
1,876,681	+		DZA65_RS08900	0.65	-0.2
1,876,681	+		DZA65_RS08900	0.65	+0.1
1,876,682	-				+1.5
1,876,685	-		DZA65_RS08900	0.65	+2.3
1,876,714	+		DZA65_RS08900	0.66	-0.1
1,876,748	-		DZA65_RS08900	0.68	+0.2
1,876,748	-		DZA65_RS08900	0.68	+1.1
1,876,781	+		DZA65_RS08900	0.69	+0.9
1,876,782	-		DZA65_RS08900	0.69	+1.0
1,876,813	-		DZA65_RS08900	0.71	-1.5
1,876,813	-		DZA65_RS08900	0.71	+0.7
1,876,834	-		DZA65_RS08900	0.72	-2.3
1,876,860	-		DZA65_RS08900	0.73	+0.2
1,876,869	+		DZA65_RS08900	0.73	+1.4
1,876,873	+		DZA65_RS08900	0.74	-1.7
1,876,894	+		DZA65_RS08900	0.74	+0.2
1,876,895	-		DZA65_RS08900	0.75	+0.9
1,876,895	-		DZA65_RS08900	0.75	+0.5
1,876,895	-		DZA65_RS08900	0.75	-0.6
1,876,940	+		DZA65_RS08900	0.77	+0.9
1,876,940	+		DZA65_RS08900	0.77	+0.2
1,876,941	-		DZA65_RS08900	0.77	-0.3
1,876,941	-		DZA65_RS08900	0.77	-0.5
1,876,941	-		DZA65_RS08900	0.77	-1.1
1,876,946	-		DZA65_RS08900	0.77	-0.2
1,876,976	-		DZA65_RS08900	0.78	-0.8
1,876,976	-		DZA65_RS08900	0.78	+5.6
1,877,064	+		DZA65_RS08900	0.82	-0.4
1,877,064	+		DZA65_RS08900	0.82	+0.3
1,877,065	-		DZA65_RS08900	0.82	+0.5
1,877,065	-		DZA65_RS08900	0.82	+1.5
1,877,070	+		DZA65_RS08900	0.82	-0.3
1,877,071	-		DZA65_RS08900	0.82	+2.4
1,877,071	-		DZA65_RS08900	0.82	+0.9
1,877,093	-		DZA65_RS08900	0.83	-1.8
1,877,103	+		DZA65_RS08900	0.84	+0.2
1,877,103	+		DZA65_RS08900	0.84	-0.4
1,877,165	-		DZA65_RS08900	0.87	+0.4
1,877,165	-		DZA65_RS08900	0.87	-0.7
1,877,165	-		DZA65_RS08900	0.87	+1.3
1,877,165	-		DZA65_RS08900	0.87	-0.9
1,877,182	+		DZA65_RS08900	0.87	+0.2
1,877,182	+		DZA65_RS08900	0.87	+0.4
1,877,200	-		DZA65_RS08900	0.88	-0.3
1,877,200	-		DZA65_RS08900	0.88	-2.9
1,877,290	-				-0.5
1,877,308	+				+0.0
1,877,308	+				+1.9
1,877,336	-				-0.7
1,877,340	+				+0.0
1,877,340	+				+1.2
1,877,340	+				-0.2
1,877,340	+				-0.2
1,877,341	-				-2.1
1,877,341	-				+0.4
1,877,341	-				+1.4
1,877,345	-				+0.3
1,877,416	+				+0.9
1,877,425	-				-0.2
1,877,434	+				+0.4
1,877,438	+				-0.1
1,877,438	+				-0.6
1,877,438	+				-0.5
1,877,438	+				+0.9
1,877,439	-				+1.3
1,877,439	-				+1.0
1,877,439	-				+1.0
1,877,439	-				-0.1
1,877,463	-				-0.7
1,877,463	-				-0.9
1,877,477	-				+0.2
1,877,531	+				-1.8
1,877,532	-				-0.8
1,877,540	+				-0.5
1,877,550	+				+0.0
1,877,551	-				+2.8
1,877,551	-				+0.7
1,877,575	+				-0.8
1,877,575	+				+1.5
1,877,575	+				-0.6
1,877,575	+				-0.4
1,877,576	-				-0.6
1,877,599	-				+0.8
1,877,636	+				-1.6
1,877,636	+				+1.1
1,877,637	-				+0.3
1,877,637	-				+0.7
1,877,733	+		DZA65_RS08905	0.66	-0.1
1,877,733	+		DZA65_RS08905	0.66	-0.3
1,877,734	-		DZA65_RS08905	0.67	-1.1
1,877,737	+		DZA65_RS08905	0.68	+1.3
1,877,737	+		DZA65_RS08905	0.68	-0.7
1,877,737	+		DZA65_RS08905	0.68	-1.5
1,877,737	+		DZA65_RS08905	0.68	+1.7
1,877,737	+		DZA65_RS08905	0.68	+0.5
1,877,737	+		DZA65_RS08905	0.68	-0.2
1,877,747	-		DZA65_RS08905	0.74	-0.6
1,877,807	+				-1.3
1,877,891	-				-1.8
1,877,891	-				-0.9
1,878,092	+		DZA65_RS08910	0.42	-0.1
1,878,092	+		DZA65_RS08910	0.42	-0.9
1,878,092	+		DZA65_RS08910	0.42	+1.1
1,878,093	-		DZA65_RS08910	0.42	-1.1
1,878,236	+		DZA65_RS08910	0.68	-1.5
1,878,236	+		DZA65_RS08910	0.68	-2.1
1,878,236	+		DZA65_RS08910	0.68	-0.1
1,878,236	+		DZA65_RS08910	0.68	+1.5
1,878,236	+		DZA65_RS08910	0.68	-0.5
1,878,236	+		DZA65_RS08910	0.68	-0.2
1,878,237	-		DZA65_RS08910	0.68	-0.9
1,878,237	-		DZA65_RS08910	0.68	-0.5
1,878,237	-		DZA65_RS08910	0.68	-0.6
1,878,237	-		DZA65_RS08910	0.68	-0.9
1,878,363	+				+0.2
1,878,389	+				-0.2
1,878,390	-				+0.6
1,878,393	-				-1.6
1,878,429	+				-0.9
1,878,452	+				+0.4