Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08295

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,745,986	+		DZA65_RS08290	0.58	+1.0
1,745,986	+				-0.5
1,745,986	+		DZA65_RS08290	0.58	+0.3
1,745,986	+		DZA65_RS08290	0.58	-0.6
1,745,987	-		DZA65_RS08290	0.58	+1.4
1,745,987	-		DZA65_RS08290	0.58	-0.3
1,746,058	+		DZA65_RS08290	0.61	-0.0
1,746,058	+		DZA65_RS08290	0.61	+0.2
1,746,058	+		DZA65_RS08290	0.61	+1.8
1,746,058	+		DZA65_RS08290	0.61	-0.5
1,746,058	+		DZA65_RS08290	0.61	-0.8
1,746,059	-		DZA65_RS08290	0.61	-3.5
1,746,059	-		DZA65_RS08290	0.61	-2.3
1,746,059	-		DZA65_RS08290	0.61	-0.2
1,746,059	-		DZA65_RS08290	0.61	+0.5
1,746,129	+		DZA65_RS08290	0.64	+0.5
1,746,129	+		DZA65_RS08290	0.64	-1.0
1,746,130	-		DZA65_RS08290	0.64	+0.9
1,746,130	-		DZA65_RS08290	0.64	-0.6
1,746,159	+		DZA65_RS08290	0.65	-0.3
1,746,160	-		DZA65_RS08290	0.65	-0.6
1,746,160	-		DZA65_RS08290	0.65	+0.7
1,746,160	-		DZA65_RS08290	0.65	+1.3
1,746,166	+		DZA65_RS08290	0.66	+0.9
1,746,167	-		DZA65_RS08290	0.66	+1.0
1,746,167	-		DZA65_RS08290	0.66	-0.5
1,746,191	-		DZA65_RS08290	0.67	+1.1
1,746,274	+		DZA65_RS08290	0.70	+0.1
1,746,274	+		DZA65_RS08290	0.70	-0.0
1,746,274	+		DZA65_RS08290	0.70	+1.5
1,746,274	+		DZA65_RS08290	0.70	-0.0
1,746,274	+		DZA65_RS08290	0.70	-0.0
1,746,274	+		DZA65_RS08290	0.70	-0.8
1,746,274	+		DZA65_RS08290	0.70	-0.8
1,746,274	+		DZA65_RS08290	0.70	+0.2
1,746,274	+		DZA65_RS08290	0.70	+0.7
1,746,274	+		DZA65_RS08290	0.70	+0.6
1,746,274	+		DZA65_RS08290	0.70	+0.2
1,746,275	-		DZA65_RS08290	0.70	+1.8
1,746,275	-		DZA65_RS08290	0.70	-0.3
1,746,275	-		DZA65_RS08290	0.70	-0.6
1,746,275	-		DZA65_RS08290	0.70	+1.1
1,746,275	-		DZA65_RS08290	0.70	+1.4
1,746,275	-		DZA65_RS08290	0.70	+1.5
1,746,275	-		DZA65_RS08290	0.70	-0.5
1,746,275	-		DZA65_RS08290	0.70	-1.3
1,746,275	-		DZA65_RS08290	0.70	-1.4
1,746,275	-		DZA65_RS08290	0.70	-0.8
1,746,275	-		DZA65_RS08290	0.70	-1.0
1,746,397	+		DZA65_RS08290	0.76	-0.4
1,746,397	+		DZA65_RS08290	0.76	+0.1
1,746,421	+		DZA65_RS08290	0.77	+2.6
1,746,421	+		DZA65_RS08290	0.77	+0.8
1,746,422	-		DZA65_RS08290	0.77	+0.0
1,746,438	+		DZA65_RS08290	0.77	+1.5
1,746,532	+		DZA65_RS08290	0.81	-0.2
1,746,532	+		DZA65_RS08290	0.81	-2.5
1,746,532	+		DZA65_RS08290	0.81	+0.1
1,746,533	-		DZA65_RS08290	0.81	-0.5
1,746,533	-		DZA65_RS08290	0.81	-0.5
1,746,643	+		DZA65_RS08290	0.86	+0.5
1,746,643	+		DZA65_RS08290	0.86	+1.3
1,746,643	+		DZA65_RS08290	0.86	-0.3
1,746,643	+		DZA65_RS08290	0.86	-1.0
1,746,644	-		DZA65_RS08290	0.86	-1.3
1,746,644	-		DZA65_RS08290	0.86	-0.5
1,746,644	-		DZA65_RS08290	0.86	+0.1
1,746,644	-		DZA65_RS08290	0.86	+0.5
1,746,644	-		DZA65_RS08290	0.86	-0.0
1,746,644	-		DZA65_RS08290	0.86	-0.5
1,746,783	+				-0.2
1,746,783	+				-1.0
1,746,784	-				-0.3
1,746,784	-				+0.8
1,746,861	+				-1.0
1,746,862	-				-1.4
1,746,868	+				+1.3
1,746,868	+				-0.0
1,746,868	+				-0.3
1,746,868	+				-2.0
1,746,868	+				-0.1
1,746,868	+				-0.3
1,746,868	+				-0.3
1,746,869	-				+0.5
1,746,869	-				-1.9
1,746,869	-				+0.5
1,746,869	-				-0.5
1,746,869	-				+0.3
1,746,908	-				-0.3
1,746,952	+				+0.5
1,746,953	-				+0.5
1,746,988	+				+0.1
1,746,988	+				-0.0
1,747,266	-		DZA65_RS08295	0.10	-0.5
1,747,580	-		DZA65_RS08295	0.22	+0.2
1,747,588	+		DZA65_RS08295	0.22	+0.9
1,747,588	+		DZA65_RS08295	0.22	-0.5
1,747,694	+		DZA65_RS08295	0.26	-1.0
1,747,694	+		DZA65_RS08295	0.26	+0.4
1,747,694	+		DZA65_RS08295	0.26	-0.9
1,747,695	-		DZA65_RS08295	0.26	+0.1
1,747,695	-		DZA65_RS08295	0.26	-0.6
1,747,695	-		DZA65_RS08295	0.26	-0.3
1,747,695	-		DZA65_RS08295	0.26	+0.3
1,747,700	+		DZA65_RS08295	0.26	+0.8
1,747,700	+		DZA65_RS08295	0.26	-0.2
1,747,700	+		DZA65_RS08295	0.26	+0.5
1,747,701	-		DZA65_RS08295	0.26	-0.0
1,747,701	-		DZA65_RS08295	0.26	+0.4
1,747,738	+		DZA65_RS08295	0.27	-0.8
1,747,738	+		DZA65_RS08295	0.27	+0.3
1,747,738	+		DZA65_RS08295	0.27	-1.2
1,747,738	+		DZA65_RS08295	0.27	+1.3
1,747,738	+		DZA65_RS08295	0.27	+0.1
1,747,738	+		DZA65_RS08295	0.27	-0.9
1,747,738	+		DZA65_RS08295	0.27	-0.5
1,747,738	+		DZA65_RS08295	0.27	-0.4
1,747,739	-		DZA65_RS08295	0.28	+0.5
1,747,739	-		DZA65_RS08295	0.28	-1.3
1,747,739	-		DZA65_RS08295	0.28	-0.1
1,747,739	-		DZA65_RS08295	0.28	-0.7
1,747,739	-		DZA65_RS08295	0.28	+0.5
1,747,739	-		DZA65_RS08295	0.28	-0.2
1,747,739	-		DZA65_RS08295	0.28	-0.3
1,747,739	-		DZA65_RS08295	0.28	-1.8
1,747,739	-		DZA65_RS08295	0.28	+0.2
1,747,742	+				+1.3
1,747,742	+		DZA65_RS08295	0.28	-1.3
1,747,742	+		DZA65_RS08295	0.28	-0.5
1,747,743	-		DZA65_RS08295	0.28	-0.4
1,747,743	-		DZA65_RS08295	0.28	+1.5
1,747,743	-		DZA65_RS08295	0.28	-1.2
1,747,830	+		DZA65_RS08295	0.31	+0.4
1,747,830	+		DZA65_RS08295	0.31	-0.6
1,747,830	+		DZA65_RS08295	0.31	-1.0
1,747,830	+		DZA65_RS08295	0.31	-0.3
1,747,830	+		DZA65_RS08295	0.31	-1.5
1,747,830	+		DZA65_RS08295	0.31	-0.1
1,747,830	+		DZA65_RS08295	0.31	+0.1
1,747,830	+		DZA65_RS08295	0.31	-1.5
1,747,830	+		DZA65_RS08295	0.31	-0.0
1,747,830	+		DZA65_RS08295	0.31	-0.0
1,747,830	+		DZA65_RS08295	0.31	-0.5
1,747,830	+		DZA65_RS08295	0.31	+1.3
1,747,830	+		DZA65_RS08295	0.31	+0.8
1,747,831	-		DZA65_RS08295	0.31	-0.1
1,747,831	-		DZA65_RS08295	0.31	-0.2
1,747,831	-		DZA65_RS08295	0.31	+0.1
1,747,831	-		DZA65_RS08295	0.31	+0.5
1,747,831	-		DZA65_RS08295	0.31	-0.5
1,747,831	-		DZA65_RS08295	0.31	-0.1
1,747,831	-		DZA65_RS08295	0.31	-0.7
1,747,831	-				+0.5
1,747,831	-		DZA65_RS08295	0.31	-0.8
1,747,991	+		DZA65_RS08295	0.37	+0.3
1,747,992	-		DZA65_RS08295	0.37	-0.9
1,747,992	-		DZA65_RS08295	0.37	-0.5
1,748,178	-		DZA65_RS08295	0.43	+0.3
1,748,276	+		DZA65_RS08295	0.47	+0.3
1,748,276	+		DZA65_RS08295	0.47	+0.0
1,748,276	+		DZA65_RS08295	0.47	+0.2
1,748,276	+		DZA65_RS08295	0.47	+0.2
1,748,277	-		DZA65_RS08295	0.47	+0.8
1,748,277	-		DZA65_RS08295	0.47	+0.8
1,748,277	-		DZA65_RS08295	0.47	+0.8
1,748,336	+		DZA65_RS08295	0.49	+3.8
1,748,336	+		DZA65_RS08295	0.49	+0.5
1,748,336	+		DZA65_RS08295	0.49	-0.5
1,748,337	-		DZA65_RS08295	0.49	-0.8
1,748,337	-		DZA65_RS08295	0.49	+0.2
1,748,337	-		DZA65_RS08295	0.49	+2.1
1,748,445	+		DZA65_RS08295	0.53	+0.5
1,748,445	+		DZA65_RS08295	0.53	+0.1
1,748,523	+		DZA65_RS08295	0.56	+0.2
1,748,548	+		DZA65_RS08295	0.57	-0.4
1,748,548	+		DZA65_RS08295	0.57	-0.8
1,748,548	+		DZA65_RS08295	0.57	-1.7
1,748,548	+		DZA65_RS08295	0.57	-0.5
1,748,549	-		DZA65_RS08295	0.57	+1.5
1,748,549	-		DZA65_RS08295	0.57	-2.0
1,748,549	-		DZA65_RS08295	0.57	+0.1
1,748,549	-		DZA65_RS08295	0.57	-1.0
1,748,549	-		DZA65_RS08295	0.57	-2.4
1,748,549	-		DZA65_RS08295	0.57	-1.6
1,748,586	-		DZA65_RS08295	0.58	-1.5
1,748,586	-		DZA65_RS08295	0.58	+0.4
1,748,586	-		DZA65_RS08295	0.58	+1.3
1,748,597	+		DZA65_RS08295	0.58	-1.8
1,748,597	+		DZA65_RS08295	0.58	-0.2
1,748,597	+		DZA65_RS08295	0.58	-0.2
1,748,597	+		DZA65_RS08295	0.58	+1.4
1,748,597	+		DZA65_RS08295	0.58	-0.7
1,748,597	+		DZA65_RS08295	0.58	-1.5
1,748,598	-		DZA65_RS08295	0.58	-1.8
1,748,598	-		DZA65_RS08295	0.58	+1.5
1,748,598	-		DZA65_RS08295	0.58	-0.5
1,748,598	-		DZA65_RS08295	0.58	-2.3
1,748,663	+		DZA65_RS08295	0.61	+2.4
1,748,663	+		DZA65_RS08295	0.61	-1.0
1,748,663	+		DZA65_RS08295	0.61	+0.4
1,748,663	+		DZA65_RS08295	0.61	-1.0
1,748,663	+		DZA65_RS08295	0.61	-0.1
1,748,663	+		DZA65_RS08295	0.61	-1.8
1,748,663	+		DZA65_RS08295	0.61	-0.6
1,748,663	+		DZA65_RS08295	0.61	-0.7
1,748,664	-		DZA65_RS08295	0.61	-2.0
1,748,664	-		DZA65_RS08295	0.61	-0.8
1,748,664	-		DZA65_RS08295	0.61	+2.1
1,748,664	-		DZA65_RS08295	0.61	-2.5
1,748,705	+		DZA65_RS08295	0.62	-1.3
1,748,716	+		DZA65_RS08295	0.63	-0.0
1,748,717	-		DZA65_RS08295	0.63	+0.0
1,748,750	+		DZA65_RS08295	0.64	-0.4
1,748,753	+		DZA65_RS08295	0.64	-0.9
1,748,754	-		DZA65_RS08295	0.64	+0.2
1,748,754	-		DZA65_RS08295	0.64	-1.5
1,748,754	-		DZA65_RS08295	0.64	-0.6
1,748,754	-		DZA65_RS08295	0.64	+0.7
1,748,939	+		DZA65_RS08295	0.71	+0.4
1,748,940	-		DZA65_RS08295	0.71	-0.4
1,748,942	+		DZA65_RS08295	0.71	+0.5
1,748,942	+		DZA65_RS08295	0.71	+2.9
1,748,943	-		DZA65_RS08295	0.71	-2.5
1,748,943	-				+2.5
1,748,943	-		DZA65_RS08295	0.71	-0.3
1,748,989	-		DZA65_RS08295	0.72	-0.7
1,749,006	+		DZA65_RS08295	0.73	-0.9
1,749,007	-		DZA65_RS08295	0.73	-0.2
1,749,007	-		DZA65_RS08295	0.73	-1.3
1,749,007	-		DZA65_RS08295	0.73	+0.2
1,749,074	+		DZA65_RS08295	0.76	-1.0
1,749,075	-		DZA65_RS08295	0.76	+0.7
1,749,159	+		DZA65_RS08295	0.79	+0.2
1,749,166	+		DZA65_RS08295	0.79	+0.1
1,749,166	+		DZA65_RS08295	0.79	+0.5
1,749,166	+		DZA65_RS08295	0.79	-1.2
1,749,167	-		DZA65_RS08295	0.79	+0.7
1,749,167	-		DZA65_RS08295	0.79	-0.5
1,749,167	-		DZA65_RS08295	0.79	-0.0
1,749,167	-		DZA65_RS08295	0.79	-0.7
1,749,167	-		DZA65_RS08295	0.79	+0.9
1,749,167	-		DZA65_RS08295	0.79	-1.8
1,749,167	-		DZA65_RS08295	0.79	-1.0
1,749,241	-		DZA65_RS08295	0.82	+1.0
1,749,241	-		DZA65_RS08295	0.82	-1.3
1,749,271	+		DZA65_RS08295	0.83	+0.8
1,749,271	+		DZA65_RS08295	0.83	+0.3
1,749,271	+		DZA65_RS08295	0.83	+0.4
1,749,272	-		DZA65_RS08295	0.83	+0.3
1,749,272	-		DZA65_RS08295	0.83	-1.0
1,749,368	+		DZA65_RS08295	0.86	-1.2
1,749,368	+		DZA65_RS08295	0.86	-1.3
1,749,368	+		DZA65_RS08295	0.86	-1.8
1,749,368	+		DZA65_RS08295	0.86	+2.5
1,749,369	-		DZA65_RS08295	0.86	-0.2
1,749,369	-		DZA65_RS08295	0.86	+0.3
1,749,369	-				-1.0
1,749,369	-		DZA65_RS08295	0.86	+0.5
1,749,369	-		DZA65_RS08295	0.86	+0.1
1,749,369	-		DZA65_RS08295	0.86	-0.3
1,749,380	+		DZA65_RS08295	0.87	+0.1
1,749,381	-		DZA65_RS08295	0.87	-0.4
1,749,381	-		DZA65_RS08295	0.87	-0.3
1,749,381	-		DZA65_RS08295	0.87	-0.0
1,749,381	-		DZA65_RS08295	0.87	-1.2
1,749,381	-		DZA65_RS08295	0.87	-0.5
1,749,615	+				+1.6
1,749,615	+				+1.1
1,749,616	-				+0.2
1,749,616	-				+2.7
1,749,616	-				+0.9
1,749,616	-				-0.5
1,749,616	-				-2.0
1,749,616	-				-1.6
1,749,707	-				+1.1
1,749,771	+				+1.5
1,749,771	+				+0.4
1,749,772	-				-0.1
1,749,772	-				+1.0
1,749,772	-				-0.7
1,749,834	+				+0.3
1,749,834	+				+0.2
1,749,835	-				-2.6
1,749,835	-				-0.4
1,749,836	+				-0.8
1,749,837	-				+0.1
1,750,070	+		DZA65_RS08300	0.36	-3.5
1,750,074	+		DZA65_RS08300	0.36	-0.5
1,750,074	+		DZA65_RS08300	0.36	+0.1
1,750,074	+		DZA65_RS08300	0.36	+0.5
1,750,074	+		DZA65_RS08300	0.36	+0.8
1,750,075	-		DZA65_RS08300	0.37	-1.2
1,750,075	-		DZA65_RS08300	0.37	-0.0
1,750,075	-		DZA65_RS08300	0.37	-1.8
1,750,075	-		DZA65_RS08300	0.37	+1.7
1,750,086	+		DZA65_RS08300	0.38	-1.8
1,750,087	-		DZA65_RS08300	0.38	-0.5
1,750,087	-		DZA65_RS08300	0.38	+1.2
1,750,087	-		DZA65_RS08300	0.38	+0.1
1,750,087	-		DZA65_RS08300	0.38	-0.8
1,750,087	-		DZA65_RS08300	0.38	+0.1
1,750,139	+		DZA65_RS08300	0.46	+0.5
1,750,139	+		DZA65_RS08300	0.46	-0.5
1,750,139	+		DZA65_RS08300	0.46	-0.6
1,750,140	-		DZA65_RS08300	0.46	-0.5
1,750,140	-		DZA65_RS08300	0.46	-0.6
1,750,209	+		DZA65_RS08300	0.56	+0.8
1,750,227	+		DZA65_RS08300	0.58	+0.3
1,750,227	+		DZA65_RS08300	0.58	+0.8
1,750,227	+		DZA65_RS08300	0.58	+0.4
1,750,227	+		DZA65_RS08300	0.58	+1.9
1,750,227	+		DZA65_RS08300	0.58	-1.2
1,750,228	-		DZA65_RS08300	0.59	-0.5
1,750,228	-		DZA65_RS08300	0.59	+0.7
1,750,228	-		DZA65_RS08300	0.59	+0.5
1,750,228	-		DZA65_RS08300	0.59	+1.0
1,750,230	+		DZA65_RS08300	0.59	+0.8
1,750,230	+		DZA65_RS08300	0.59	-0.2
1,750,230	+		DZA65_RS08300	0.59	-1.8
1,750,231	-		DZA65_RS08300	0.59	-0.6
1,750,231	-		DZA65_RS08300	0.59	-0.3
1,750,231	-		DZA65_RS08300	0.59	-1.5
1,750,231	-		DZA65_RS08300	0.59	-0.8
1,750,231	-		DZA65_RS08300	0.59	-1.8
1,750,231	-		DZA65_RS08300	0.59	+1.1
1,750,231	-		DZA65_RS08300	0.59	-2.3
1,750,231	-		DZA65_RS08300	0.59	+0.5
1,750,278	+		DZA65_RS08300	0.66	-0.5
1,750,278	+		DZA65_RS08300	0.66	-0.5
1,750,278	+		DZA65_RS08300	0.66	+0.4
1,750,278	+		DZA65_RS08300	0.66	-1.0
1,750,279	-		DZA65_RS08300	0.66	-0.8
1,750,279	-		DZA65_RS08300	0.66	+0.8
1,750,279	-		DZA65_RS08300	0.66	+3.0
1,750,413	+		DZA65_RS08300	0.85	+0.9
1,750,413	+		DZA65_RS08300	0.85	+0.4
1,750,413	+		DZA65_RS08300	0.85	+1.1
1,750,413	+		DZA65_RS08300	0.85	-1.0
1,750,414	-		DZA65_RS08300	0.85	-1.0
1,750,414	-		DZA65_RS08300	0.85	-0.0
1,750,414	-		DZA65_RS08300	0.85	-0.1
1,750,414	-		DZA65_RS08300	0.85	-0.9
1,750,452	+				-1.3
1,750,515	+				+0.2
1,750,515	+				+0.7
1,750,516	-				+0.3
1,750,516	-				-0.3
1,750,634	+		DZA65_RS08305	0.14	+1.7
1,750,634	+				-0.8
1,750,635	-		DZA65_RS08305	0.14	-0.2