Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08225

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,728,395	-				+1.0
1,728,396	+				+0.2
1,728,397	-				+0.3
1,728,402	+				-0.7
1,728,402	+				+0.3
1,728,453	+		DZA65_RS08220	0.15	+0.2
1,728,453	+		DZA65_RS08220	0.15	-0.7
1,728,453	+		DZA65_RS08220	0.15	+1.0
1,728,454	-		DZA65_RS08220	0.16	-1.5
1,728,454	-		DZA65_RS08220	0.16	+1.4
1,728,523	+		DZA65_RS08220	0.45	+0.2
1,728,524	-		DZA65_RS08220	0.46	-0.6
1,728,524	-		DZA65_RS08220	0.46	-0.3
1,728,524	-		DZA65_RS08220	0.46	-1.0
1,728,524	-		DZA65_RS08220	0.46	-0.6
1,728,545	+		DZA65_RS08220	0.55	-0.0
1,728,576	+		DZA65_RS08220	0.68	+0.5
1,728,673	+				-0.3
1,728,673	+				+0.3
1,728,673	+				+0.2
1,728,674	-				+0.5
1,728,674	-				-1.3
1,728,674	-				-3.3
1,728,676	+				+0.5
1,728,676	+				-1.8
1,728,676	+				+0.1
1,728,676	+				-1.5
1,728,676	+				-1.2
1,728,677	-				-0.5
1,728,678	+				-0.1
1,728,678	+				+1.3
1,728,678	+				+1.2
1,728,678	+				+1.0
1,728,678	+				-0.3
1,728,678	+				+0.9
1,728,679	-				-0.4
1,728,684	+				+0.6
1,728,684	+				+0.1
1,728,684	+				+0.1
1,728,684	+				-0.6
1,728,684	+				-0.5
1,728,684	+				-1.0
1,728,684	+				-1.0
1,728,685	-				-0.0
1,728,685	-				+0.6
1,728,685	-				-0.8
1,728,685	-				-2.0
1,728,685	-				+1.7
1,728,685	-				-0.3
1,728,685	-				+0.1
1,728,685	-				-1.6
1,728,688	+				-1.5
1,728,688	+				-0.5
1,728,688	+				-0.1
1,728,688	+				-1.5
1,728,692	+				-0.7
1,728,692	+				+0.6
1,728,692	+				+0.3
1,728,692	+				+0.2
1,728,693	-				-1.5
1,728,693	-				+0.7
1,728,693	-				-1.2
1,728,693	-				-0.1
1,728,693	-				+0.5
1,728,693	-				+0.3
1,728,733	+				-0.0
1,728,733	+				+0.1
1,728,733	+				+0.4
1,728,738	+				+0.4
1,728,739	-				+0.5
1,728,739	-				+0.2
1,728,744	-				+0.1
1,728,800	+				+0.1
1,728,800	+				+1.1
1,728,801	-				+0.5
1,728,806	+				+0.3
1,728,807	-				+0.7
1,728,848	+				-1.4
1,728,848	+				+0.6
1,728,848	+				-0.3
1,728,848	+				+1.5
1,728,849	-				-0.1
1,728,849	-				-1.0
1,728,849	-				+0.1
1,728,849	-				-1.3
1,728,863	-				+0.3
1,728,863	-				-0.2
1,728,893	+				-0.2
1,728,893	+				-1.0
1,728,893	+				-0.3
1,728,893	+				-0.3
1,728,893	+				+0.3
1,728,894	-				-0.3
1,728,894	-				-1.8
1,728,894	-				-2.6
1,728,908	+				-0.5
1,728,909	-				+0.4
1,728,909	-				+0.2
1,728,939	-				+0.9
1,728,939	-				+0.3
1,728,939	-				-0.5
1,728,939	-				-0.3
1,728,939	-				+2.1
1,728,939	-				+0.0
1,728,984	-				-0.5
1,729,016	-				-0.0
1,729,041	+				+1.5
1,729,042	-				-0.1
1,729,042	-				+0.5
1,729,099	-				+0.5
1,729,099	-				-1.0
1,729,099	-				-0.8
1,729,107	+				-0.1
1,729,108	-				-1.6
1,729,108	-				-1.5
1,729,108	-				+1.1
1,729,109	+				-0.7
1,729,109	+				-1.5
1,729,109	+				-0.3
1,729,109	+				+0.2
1,729,109	+				+0.7
1,729,109	+				-0.0
1,729,109	+				-0.7
1,729,109	+				-0.5
1,729,110	-				-0.0
1,729,110	-				-0.9
1,729,110	-				+0.5
1,729,110	-				-0.6
1,729,110	-				+0.1
1,729,116	+				-0.3
1,729,116	+				-0.6
1,729,117	-				-0.2
1,729,168	+				-0.0
1,729,168	+				-0.3
1,729,168	+				-2.3
1,729,168	+				+0.9
1,729,168	+				-0.2
1,729,168	+				-1.6
1,729,168	+				-0.5
1,729,169	-				-1.6
1,729,169	-				+1.1
1,729,169	-				+0.2
1,729,169	-				+0.5
1,729,169	-				-0.4
1,729,169	-				-2.8
1,729,169	-				-0.6
1,729,169	-				+0.2
1,729,169	-				+0.5
1,729,169	-				+0.0
1,729,243	+				+0.1
1,729,243	+				+0.3
1,729,243	+				+0.2
1,729,243	+				-0.2
1,729,244	-				-0.5
1,729,244	-				-0.6
1,729,244	-				+1.1
1,729,244	-				-0.7
1,729,244	-				-0.3
1,729,245	+				-0.7
1,729,245	+				+0.2
1,729,245	+				+2.4
1,729,245	+				-0.5
1,729,245	+				+0.3
1,729,246	-				-1.0
1,729,246	-				-2.0
1,729,246	-				-1.5
1,729,246	-				+0.1
1,729,246	-				+0.3
1,729,246	-				-0.2
1,729,264	+				-0.1
1,729,264	+				+0.1
1,729,266	+				+0.5
1,729,266	+				-2.0
1,729,266	+				-0.9
1,729,266	+				-1.0
1,729,267	-				-0.1
1,729,267	-				-0.8
1,729,267	-				+1.6
1,729,270	+				-0.6
1,729,270	+				+0.3
1,729,271	-				+0.5
1,729,271	-				-0.6
1,729,282	-				-0.5
1,729,293	-				+1.3
1,729,294	+				-0.3
1,729,450	+		DZA65_RS08225	0.12	+1.5
1,729,450	+		DZA65_RS08225	0.12	-0.3
1,729,451	-		DZA65_RS08225	0.12	-0.5
1,729,503	+				+1.7
1,729,503	+		DZA65_RS08225	0.23	-0.8
1,729,504	-				+0.5
1,729,504	-		DZA65_RS08225	0.23	-0.5
1,729,504	-		DZA65_RS08225	0.23	+1.5
1,729,504	-		DZA65_RS08225	0.23	-0.7
1,729,504	-		DZA65_RS08225	0.23	-1.0
1,729,505	+		DZA65_RS08225	0.23	-0.0
1,729,505	+		DZA65_RS08225	0.23	+0.5
1,729,505	+		DZA65_RS08225	0.23	-0.9
1,729,505	+		DZA65_RS08225	0.23	-1.3
1,729,505	+		DZA65_RS08225	0.23	+0.8
1,729,505	+		DZA65_RS08225	0.23	+0.1
1,729,505	+		DZA65_RS08225	0.23	-3.6
1,729,505	+		DZA65_RS08225	0.23	-0.7
1,729,505	+		DZA65_RS08225	0.23	+0.5
1,729,505	+		DZA65_RS08225	0.23	-0.6
1,729,505	+		DZA65_RS08225	0.23	-2.0
1,729,505	+		DZA65_RS08225	0.23	-1.0
1,729,506	-		DZA65_RS08225	0.23	+0.2
1,729,506	-		DZA65_RS08225	0.23	-0.0
1,729,506	-		DZA65_RS08225	0.23	-0.8
1,729,506	-		DZA65_RS08225	0.23	-0.0
1,729,506	-		DZA65_RS08225	0.23	-2.3
1,729,506	-		DZA65_RS08225	0.23	-1.3
1,729,506	-		DZA65_RS08225	0.23	+0.7
1,729,506	-		DZA65_RS08225	0.23	-1.0
1,729,506	-		DZA65_RS08225	0.23	+0.5
1,729,506	-		DZA65_RS08225	0.23	-0.9
1,729,506	-		DZA65_RS08225	0.23	-1.3
1,729,506	-		DZA65_RS08225	0.23	-0.1
1,729,506	-		DZA65_RS08225	0.23	-0.2
1,729,506	-		DZA65_RS08225	0.23	-0.8
1,729,506	-		DZA65_RS08225	0.23	-1.0
1,729,506	-		DZA65_RS08225	0.23	-0.7
1,729,506	-		DZA65_RS08225	0.23	-0.5
1,729,506	-		DZA65_RS08225	0.23	-0.6
1,729,506	-		DZA65_RS08225	0.23	+0.5
1,729,506	-		DZA65_RS08225	0.23	+1.0
1,729,507	+		DZA65_RS08225	0.23	+0.1
1,729,507	+		DZA65_RS08225	0.23	-0.2
1,729,507	+		DZA65_RS08225	0.23	-2.5
1,729,507	+		DZA65_RS08225	0.23	-1.8
1,729,507	+		DZA65_RS08225	0.23	-0.5
1,729,507	+		DZA65_RS08225	0.23	-0.5
1,729,507	+		DZA65_RS08225	0.23	+1.1
1,729,508	-		DZA65_RS08225	0.24	-0.0
1,729,508	-		DZA65_RS08225	0.24	-1.2
1,729,508	-		DZA65_RS08225	0.24	-0.8
1,729,508	-		DZA65_RS08225	0.24	-2.0
1,729,508	-		DZA65_RS08225	0.24	-1.8
1,729,508	-		DZA65_RS08225	0.24	-0.0
1,729,560	+		DZA65_RS08225	0.34	+0.2
1,729,584	+		DZA65_RS08225	0.39	-1.5
1,729,714	+		DZA65_RS08225	0.66	+0.1
1,729,715	-		DZA65_RS08225	0.66	-1.5
1,729,715	-		DZA65_RS08225	0.66	+0.3
1,729,715	-		DZA65_RS08225	0.66	-0.5
1,729,769	-		DZA65_RS08225	0.77	+0.8
1,729,769	-		DZA65_RS08225	0.77	-0.0
1,729,854	+				-0.8
1,729,854	+				-0.2
1,729,855	-				-0.6
1,729,929	+				-1.2
1,729,929	+				+3.4
1,729,929	+				-0.0
1,729,932	+				-0.0
1,729,932	+				-1.0
1,729,932	+				-0.8
1,729,932	+				-2.2
1,729,932	+				+0.4
1,729,933	-				-0.1
1,729,966	+				+0.4
1,729,967	-				-2.0
1,729,991	+				+0.6
1,729,991	+				+1.8
1,729,992	-				-0.7
1,729,992	-				-0.8
1,730,097	-		DZA65_RS08230	0.16	-0.2
1,730,109	+		DZA65_RS08230	0.17	+0.5
1,730,110	-		DZA65_RS08230	0.17	-0.8
1,730,110	-		DZA65_RS08230	0.17	-0.4
1,730,110	-		DZA65_RS08230	0.17	-0.1
1,730,148	-		DZA65_RS08230	0.21	+1.4
1,730,171	+		DZA65_RS08230	0.24	+0.3
1,730,171	+		DZA65_RS08230	0.24	-0.7
1,730,171	+		DZA65_RS08230	0.24	-0.2
1,730,185	+		DZA65_RS08230	0.25	+1.0
1,730,185	+		DZA65_RS08230	0.25	-0.8
1,730,186	-		DZA65_RS08230	0.25	+0.3
1,730,317	-		DZA65_RS08230	0.39	-0.8
1,730,359	-		DZA65_RS08230	0.44	+1.0
1,730,494	+		DZA65_RS08230	0.58	+0.3
1,730,561	+		DZA65_RS08230	0.65	-1.0
1,730,561	+		DZA65_RS08230	0.65	+0.4
1,730,562	-		DZA65_RS08230	0.65	-0.5
1,730,587	+		DZA65_RS08230	0.68	-1.0
1,730,670	+		DZA65_RS08230	0.77	+0.9
1,730,671	-		DZA65_RS08230	0.77	+0.8
1,730,677	+		DZA65_RS08230	0.78	-0.0
1,730,678	-		DZA65_RS08230	0.78	+1.0
1,730,678	-		DZA65_RS08230	0.78	-0.3
1,730,678	-		DZA65_RS08230	0.78	+0.7
1,730,682	+		DZA65_RS08230	0.78	+0.1
1,730,682	+		DZA65_RS08230	0.78	+0.5