Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS07660 and DZA65_RS07665 are separated by 16 nucleotides DZA65_RS07665 and DZA65_RS07670 are separated by 666 nucleotides DZA65_RS07670 and DZA65_RS07675 are separated by 113 nucleotides DZA65_RS07675 and DZA65_RS07680 are separated by 133 nucleotides
DZA65_RS07660: DZA65_RS07660 - DUF2857 domain-containing protein, at 1,594,573 to 1,595,157
_RS07660
DZA65_RS07665: DZA65_RS07665 - AlpA family transcriptional regulator, at 1,595,174 to 1,595,368
_RS07665
DZA65_RS07670: DZA65_RS07670 - helix-turn-helix transcriptional regulator, at 1,596,035 to 1,596,292
_RS07670
DZA65_RS07675: DZA65_RS07675 - helix-turn-helix transcriptional regulator, at 1,596,406 to 1,596,684
_RS07675
DZA65_RS07680: DZA65_RS07680 - transcriptional regulator, at 1,596,818 to 1,597,105
_RS07680
Position (kb) 1596
1597 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1595.053 kb on + strand, within DZA65_RS07660 at 1595.054 kb on - strand, within DZA65_RS07660 at 1595.088 kb on - strand, within DZA65_RS07660 at 1595.128 kb on + strand at 1595.138 kb on + strand at 1595.157 kb on + strand at 1595.158 kb on - strand at 1595.206 kb on + strand, within DZA65_RS07665 at 1595.292 kb on + strand, within DZA65_RS07665 at 1595.293 kb on - strand, within DZA65_RS07665 at 1595.293 kb on - strand, within DZA65_RS07665 at 1595.293 kb on - strand, within DZA65_RS07665 at 1595.298 kb on + strand, within DZA65_RS07665 at 1595.298 kb on + strand, within DZA65_RS07665 at 1595.368 kb on + strand at 1595.368 kb on + strand at 1595.368 kb on + strand at 1595.368 kb on + strand at 1595.368 kb on + strand at 1595.368 kb on + strand at 1595.368 kb on + strand at 1595.368 kb on + strand at 1595.369 kb on - strand at 1595.369 kb on - strand at 1595.369 kb on - strand at 1595.451 kb on + strand at 1595.452 kb on - strand at 1595.490 kb on - strand at 1595.526 kb on - strand at 1595.529 kb on + strand at 1595.547 kb on + strand at 1595.547 kb on + strand at 1595.631 kb on + strand at 1595.641 kb on - strand at 1595.651 kb on + strand at 1595.682 kb on + strand at 1595.683 kb on - strand at 1595.683 kb on - strand at 1595.683 kb on - strand at 1595.685 kb on - strand at 1595.687 kb on + strand at 1595.752 kb on - strand at 1595.778 kb on + strand at 1595.779 kb on - strand at 1595.822 kb on - strand at 1595.822 kb on - strand at 1595.822 kb on - strand at 1595.900 kb on + strand at 1595.900 kb on + strand at 1595.901 kb on - strand at 1595.919 kb on - strand at 1595.919 kb on - strand at 1595.951 kb on + strand at 1595.972 kb on - strand at 1595.972 kb on - strand at 1595.991 kb on + strand at 1595.991 kb on + strand at 1595.992 kb on - strand at 1595.992 kb on - strand at 1596.000 kb on + strand at 1596.000 kb on + strand at 1596.000 kb on + strand at 1596.000 kb on + strand at 1596.000 kb on + strand at 1596.000 kb on + strand at 1596.000 kb on + strand at 1596.000 kb on + strand at 1596.000 kb on + strand at 1596.000 kb on + strand at 1596.000 kb on + strand at 1596.000 kb on + strand at 1596.001 kb on - strand at 1596.001 kb on - strand at 1596.001 kb on - strand at 1596.001 kb on - strand at 1596.001 kb on - strand at 1596.001 kb on - strand at 1596.001 kb on - strand at 1596.001 kb on - strand at 1596.001 kb on - strand at 1596.001 kb on - strand at 1596.001 kb on - strand at 1596.036 kb on + strand at 1596.036 kb on + strand at 1596.037 kb on - strand at 1596.037 kb on - strand at 1596.037 kb on - strand at 1596.037 kb on - strand at 1596.037 kb on - strand at 1596.037 kb on - strand at 1596.037 kb on - strand at 1596.037 kb on - strand at 1596.059 kb on + strand at 1596.095 kb on + strand, within DZA65_RS07670 at 1596.095 kb on + strand, within DZA65_RS07670 at 1596.095 kb on + strand, within DZA65_RS07670 at 1596.095 kb on + strand, within DZA65_RS07670 at 1596.095 kb on + strand, within DZA65_RS07670 at 1596.096 kb on - strand, within DZA65_RS07670 at 1596.096 kb on - strand, within DZA65_RS07670 at 1596.096 kb on - strand, within DZA65_RS07670 at 1596.096 kb on - strand, within DZA65_RS07670 at 1596.096 kb on - strand, within DZA65_RS07670 at 1596.098 kb on - strand, within DZA65_RS07670 at 1596.099 kb on + strand, within DZA65_RS07670 at 1596.099 kb on + strand, within DZA65_RS07670 at 1596.099 kb on + strand, within DZA65_RS07670 at 1596.099 kb on + strand, within DZA65_RS07670 at 1596.099 kb on + strand, within DZA65_RS07670 at 1596.099 kb on + strand, within DZA65_RS07670 at 1596.100 kb on - strand, within DZA65_RS07670 at 1596.100 kb on - strand, within DZA65_RS07670 at 1596.100 kb on - strand, within DZA65_RS07670 at 1596.100 kb on - strand, within DZA65_RS07670 at 1596.100 kb on - strand, within DZA65_RS07670 at 1596.100 kb on - strand, within DZA65_RS07670 at 1596.105 kb on + strand, within DZA65_RS07670 at 1596.105 kb on + strand, within DZA65_RS07670 at 1596.105 kb on + strand, within DZA65_RS07670 at 1596.105 kb on + strand, within DZA65_RS07670 at 1596.105 kb on + strand, within DZA65_RS07670 at 1596.106 kb on - strand, within DZA65_RS07670 at 1596.106 kb on - strand, within DZA65_RS07670 at 1596.116 kb on + strand, within DZA65_RS07670 at 1596.116 kb on + strand, within DZA65_RS07670 at 1596.116 kb on + strand, within DZA65_RS07670 at 1596.117 kb on - strand, within DZA65_RS07670 at 1596.122 kb on + strand, within DZA65_RS07670 at 1596.122 kb on + strand, within DZA65_RS07670 at 1596.122 kb on + strand, within DZA65_RS07670 at 1596.122 kb on + strand, within DZA65_RS07670 at 1596.123 kb on - strand, within DZA65_RS07670 at 1596.123 kb on - strand, within DZA65_RS07670 at 1596.125 kb on + strand, within DZA65_RS07670 at 1596.126 kb on - strand, within DZA65_RS07670 at 1596.199 kb on - strand, within DZA65_RS07670 at 1596.205 kb on + strand, within DZA65_RS07670 at 1596.205 kb on + strand, within DZA65_RS07670 at 1596.205 kb on + strand, within DZA65_RS07670 at 1596.206 kb on - strand, within DZA65_RS07670 at 1596.227 kb on + strand, within DZA65_RS07670 at 1596.328 kb on - strand at 1596.379 kb on - strand at 1596.491 kb on + strand, within DZA65_RS07675 at 1596.491 kb on + strand, within DZA65_RS07675 at 1596.492 kb on - strand, within DZA65_RS07675 at 1596.497 kb on + strand, within DZA65_RS07675 at 1596.497 kb on + strand, within DZA65_RS07675 at 1596.497 kb on + strand, within DZA65_RS07675 at 1596.498 kb on - strand, within DZA65_RS07675 at 1596.498 kb on - strand, within DZA65_RS07675 at 1596.498 kb on - strand, within DZA65_RS07675 at 1596.517 kb on + strand, within DZA65_RS07675 at 1596.535 kb on + strand, within DZA65_RS07675 at 1596.535 kb on + strand, within DZA65_RS07675 at 1596.536 kb on - strand, within DZA65_RS07675 at 1596.536 kb on - strand, within DZA65_RS07675 at 1596.572 kb on + strand, within DZA65_RS07675 at 1596.573 kb on - strand, within DZA65_RS07675 at 1596.573 kb on - strand, within DZA65_RS07675 at 1596.590 kb on + strand at 1596.597 kb on + strand, within DZA65_RS07675 at 1596.667 kb on + strand at 1596.685 kb on - strand at 1596.704 kb on + strand at 1596.704 kb on + strand at 1596.705 kb on - strand at 1596.705 kb on - strand at 1596.705 kb on - strand at 1596.706 kb on + strand at 1596.706 kb on + strand at 1596.706 kb on + strand at 1596.706 kb on + strand at 1596.707 kb on - strand at 1596.707 kb on - strand at 1596.851 kb on - strand, within DZA65_RS07680 at 1596.877 kb on + strand, within DZA65_RS07680 at 1596.877 kb on + strand, within DZA65_RS07680 at 1596.877 kb on + strand, within DZA65_RS07680 at 1596.878 kb on - strand, within DZA65_RS07680 at 1596.878 kb on - strand, within DZA65_RS07680 at 1596.937 kb on + strand, within DZA65_RS07680 at 1596.987 kb on + strand, within DZA65_RS07680 at 1597.072 kb on + strand, within DZA65_RS07680 at 1597.072 kb on + strand, within DZA65_RS07680 at 1597.072 kb on + strand, within DZA65_RS07680 at 1597.073 kb on - strand, within DZA65_RS07680 at 1597.086 kb on - strand at 1597.103 kb on + strand at 1597.143 kb on + strand at 1597.143 kb on + strand at 1597.143 kb on + strand at 1597.144 kb on - strand at 1597.144 kb on - strand at 1597.158 kb on - strand at 1597.201 kb on + strand at 1597.201 kb on + strand at 1597.201 kb on + strand at 1597.202 kb on - strand at 1597.202 kb on - strand at 1597.202 kb on - strand at 1597.211 kb on + strand at 1597.211 kb on + strand at 1597.211 kb on + strand at 1597.212 kb on - strand at 1597.212 kb on - strand at 1597.219 kb on + strand at 1597.219 kb on + strand at 1597.219 kb on + strand at 1597.220 kb on - strand at 1597.220 kb on - strand at 1597.270 kb on - strand at 1597.270 kb on - strand at 1597.271 kb on + strand at 1597.271 kb on + strand at 1597.272 kb on - strand at 1597.272 kb on - strand at 1597.272 kb on - strand at 1597.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 1,595,053 + DZA65_RS07660 0.82 +0.4 1,595,054 - DZA65_RS07660 0.82 -1.0 1,595,088 - DZA65_RS07660 0.88 -0.6 1,595,128 + -0.6 1,595,138 + +2.6 1,595,157 + +0.3 1,595,158 - +0.3 1,595,206 + DZA65_RS07665 0.16 -0.3 1,595,292 + DZA65_RS07665 0.61 -0.2 1,595,293 - DZA65_RS07665 0.61 -1.4 1,595,293 - DZA65_RS07665 0.61 -2.2 1,595,293 - DZA65_RS07665 0.61 +0.6 1,595,298 + DZA65_RS07665 0.64 +1.0 1,595,298 + DZA65_RS07665 0.64 +0.2 1,595,368 + +0.2 1,595,368 + -0.1 1,595,368 + +1.6 1,595,368 + +1.5 1,595,368 + -0.3 1,595,368 + -0.1 1,595,368 + +0.7 1,595,368 + -0.2 1,595,369 - -1.4 1,595,369 - -0.6 1,595,369 - -2.0 1,595,451 + +0.6 1,595,452 - +0.9 1,595,490 - -0.2 1,595,526 - +0.6 1,595,529 + +0.4 1,595,547 + +2.6 1,595,547 + -0.7 1,595,631 + +1.6 1,595,641 - -0.3 1,595,651 + -0.5 1,595,682 + +0.2 1,595,683 - +0.6 1,595,683 - -0.3 1,595,683 - -0.7 1,595,685 - -0.4 1,595,687 + -0.7 1,595,752 - +0.1 1,595,778 + +0.8 1,595,779 - +0.7 1,595,822 - -1.7 1,595,822 - +0.5 1,595,822 - +0.6 1,595,900 + +0.0 1,595,900 + +1.2 1,595,901 - +0.3 1,595,919 - -1.0 1,595,919 - +0.6 1,595,951 + +0.3 1,595,972 - +1.2 1,595,972 - +1.9 1,595,991 + -0.9 1,595,991 + -0.3 1,595,992 - +1.9 1,595,992 - -0.2 1,596,000 + -0.7 1,596,000 + -0.2 1,596,000 + -2.0 1,596,000 + -1.0 1,596,000 + -2.4 1,596,000 + +0.0 1,596,000 + +1.3 1,596,000 + +0.6 1,596,000 + -1.0 1,596,000 + +1.8 1,596,000 + -1.6 1,596,000 + -0.1 1,596,001 - +0.7 1,596,001 - +1.6 1,596,001 - +0.2 1,596,001 - -0.3 1,596,001 - -0.0 1,596,001 - +0.2 1,596,001 - -0.4 1,596,001 - +0.3 1,596,001 - -0.6 1,596,001 - -0.6 1,596,001 - -1.0 1,596,036 + +0.4 1,596,036 + +1.1 1,596,037 - -1.0 1,596,037 - +0.6 1,596,037 - -0.1 1,596,037 - -1.1 1,596,037 - -1.2 1,596,037 - +0.6 1,596,037 - +0.1 1,596,037 - -1.4 1,596,059 + -0.6 1,596,095 + DZA65_RS07670 0.23 +2.9 1,596,095 + DZA65_RS07670 0.23 -0.7 1,596,095 + DZA65_RS07670 0.23 -1.0 1,596,095 + DZA65_RS07670 0.23 -0.7 1,596,095 + DZA65_RS07670 0.23 +4.5 1,596,096 - DZA65_RS07670 0.24 +0.9 1,596,096 - DZA65_RS07670 0.24 +1.3 1,596,096 - DZA65_RS07670 0.24 -0.3 1,596,096 - DZA65_RS07670 0.24 -1.0 1,596,096 - DZA65_RS07670 0.24 -0.9 1,596,098 - DZA65_RS07670 0.24 +0.6 1,596,099 + DZA65_RS07670 0.25 +0.6 1,596,099 + DZA65_RS07670 0.25 +0.3 1,596,099 + DZA65_RS07670 0.25 +1.5 1,596,099 + DZA65_RS07670 0.25 -1.4 1,596,099 + DZA65_RS07670 0.25 +0.6 1,596,099 + DZA65_RS07670 0.25 -1.4 1,596,100 - DZA65_RS07670 0.25 -1.0 1,596,100 - DZA65_RS07670 0.25 +0.1 1,596,100 - DZA65_RS07670 0.25 -0.4 1,596,100 - DZA65_RS07670 0.25 +1.0 1,596,100 - DZA65_RS07670 0.25 +0.6 1,596,100 - DZA65_RS07670 0.25 -1.6 1,596,105 + DZA65_RS07670 0.27 +0.0 1,596,105 + DZA65_RS07670 0.27 +1.1 1,596,105 + DZA65_RS07670 0.27 +0.3 1,596,105 + DZA65_RS07670 0.27 +0.1 1,596,105 + DZA65_RS07670 0.27 -0.1 1,596,106 - DZA65_RS07670 0.28 +0.0 1,596,106 - DZA65_RS07670 0.28 +1.1 1,596,116 + DZA65_RS07670 0.31 -1.4 1,596,116 + DZA65_RS07670 0.31 -0.5 1,596,116 + DZA65_RS07670 0.31 +0.5 1,596,117 - DZA65_RS07670 0.32 +0.9 1,596,122 + DZA65_RS07670 0.34 -1.6 1,596,122 + DZA65_RS07670 0.34 +2.0 1,596,122 + DZA65_RS07670 0.34 +0.7 1,596,122 + DZA65_RS07670 0.34 -1.0 1,596,123 - DZA65_RS07670 0.34 -0.7 1,596,123 - DZA65_RS07670 0.34 +1.6 1,596,125 + DZA65_RS07670 0.35 +0.2 1,596,126 - DZA65_RS07670 0.35 +0.2 1,596,199 - DZA65_RS07670 0.64 +0.0 1,596,205 + DZA65_RS07670 0.66 +1.0 1,596,205 + DZA65_RS07670 0.66 +0.4 1,596,205 + DZA65_RS07670 0.66 +0.4 1,596,206 - DZA65_RS07670 0.66 +0.0 1,596,227 + DZA65_RS07670 0.74 -1.0 1,596,328 - +0.0 1,596,379 - -0.7 1,596,491 + DZA65_RS07675 0.30 -0.4 1,596,491 + DZA65_RS07675 0.30 +2.0 1,596,492 - DZA65_RS07675 0.31 -1.3 1,596,497 + DZA65_RS07675 0.33 +0.5 1,596,497 + DZA65_RS07675 0.33 -0.2 1,596,497 + DZA65_RS07675 0.33 -0.9 1,596,498 - DZA65_RS07675 0.33 -1.1 1,596,498 - DZA65_RS07675 0.33 +0.2 1,596,498 - DZA65_RS07675 0.33 +1.2 1,596,517 + DZA65_RS07675 0.40 -0.6 1,596,535 + DZA65_RS07675 0.46 -1.4 1,596,535 + DZA65_RS07675 0.46 +0.6 1,596,536 - DZA65_RS07675 0.47 +0.6 1,596,536 - DZA65_RS07675 0.47 -2.6 1,596,572 + DZA65_RS07675 0.59 -0.4 1,596,573 - DZA65_RS07675 0.60 -0.1 1,596,573 - DZA65_RS07675 0.60 +0.2 1,596,590 + -1.0 1,596,597 + DZA65_RS07675 0.68 +0.7 1,596,667 + -1.0 1,596,685 - +1.3 1,596,704 + +0.4 1,596,704 + -0.1 1,596,705 - +1.2 1,596,705 - +0.3 1,596,705 - -1.7 1,596,706 + -0.8 1,596,706 + +1.5 1,596,706 + +0.1 1,596,706 + -0.0 1,596,707 - +0.0 1,596,707 - -0.4 1,596,851 - DZA65_RS07680 0.11 +1.0 1,596,877 + DZA65_RS07680 0.20 -0.4 1,596,877 + DZA65_RS07680 0.20 -0.6 1,596,877 + DZA65_RS07680 0.20 -2.7 1,596,878 - DZA65_RS07680 0.21 -2.0 1,596,878 - DZA65_RS07680 0.21 -0.4 1,596,937 + DZA65_RS07680 0.41 -0.1 1,596,987 + DZA65_RS07680 0.59 +0.2 1,597,072 + DZA65_RS07680 0.88 -0.2 1,597,072 + DZA65_RS07680 0.88 -1.9 1,597,072 + DZA65_RS07680 0.88 +0.4 1,597,073 - DZA65_RS07680 0.89 -2.0 1,597,086 - +0.4 1,597,103 + -0.8 1,597,143 + +0.0 1,597,143 + +0.0 1,597,143 + -0.4 1,597,144 - -0.5 1,597,144 - +0.2 1,597,158 - +0.3 1,597,201 + -0.3 1,597,201 + -0.6 1,597,201 + -0.0 1,597,202 - +1.7 1,597,202 - -0.4 1,597,202 - +1.2 1,597,211 + -0.2 1,597,211 + +0.3 1,597,211 + -0.4 1,597,212 - -0.5 1,597,212 - -0.9 1,597,219 + +0.4 1,597,219 + +1.0 1,597,219 + -0.1 1,597,220 - -2.0 1,597,220 - +0.4 1,597,270 - -0.2 1,597,270 - -0.7 1,597,271 + +0.6 1,597,271 + -0.5 1,597,272 - -0.1 1,597,272 - +1.2 1,597,272 - +1.8 1,597,272 - +0.3
Or see this region's nucleotide sequence