Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07350

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,530,264	+		DZA65_RS07340	0.86	-0.4
1,530,264	+		DZA65_RS07340	0.86	-0.4
1,530,289	+				-0.1
1,530,290	-				-1.0
1,530,321	+				+0.1
1,530,321	+				-0.4
1,530,321	+				-0.7
1,530,322	-				+0.9
1,530,322	-				+0.3
1,530,341	+				-1.2
1,530,364	+				+0.8
1,530,364	+				-1.0
1,530,364	+				+2.1
1,530,364	+				-0.6
1,530,364	+				-0.7
1,530,364	+				+0.5
1,530,364	+				-0.4
1,530,364	+				+0.2
1,530,365	-				-1.0
1,530,365	-				-1.0
1,530,365	-				-0.0
1,530,365	-				-1.4
1,530,365	-				+0.4
1,530,365	-				+1.4
1,530,434	-		DZA65_RS07345	0.14	+0.3
1,530,434	-		DZA65_RS07345	0.14	-0.4
1,530,434	-		DZA65_RS07345	0.14	+0.1
1,530,479	+		DZA65_RS07345	0.22	-2.5
1,530,480	-		DZA65_RS07345	0.22	+1.6
1,530,480	-		DZA65_RS07345	0.22	+0.6
1,530,480	-		DZA65_RS07345	0.22	+1.0
1,530,510	-		DZA65_RS07345	0.27	+0.4
1,530,510	-		DZA65_RS07345	0.27	+2.2
1,530,572	+		DZA65_RS07345	0.38	-0.6
1,530,572	+		DZA65_RS07345	0.38	+0.3
1,530,624	+		DZA65_RS07345	0.47	+0.8
1,530,624	+		DZA65_RS07345	0.47	-1.1
1,530,624	+		DZA65_RS07345	0.47	+0.2
1,530,625	-		DZA65_RS07345	0.47	-1.0
1,530,635	+		DZA65_RS07345	0.49	+0.0
1,530,635	+		DZA65_RS07345	0.49	+0.3
1,530,635	+		DZA65_RS07345	0.49	+0.3
1,530,653	+		DZA65_RS07345	0.52	+0.6
1,530,654	-		DZA65_RS07345	0.52	+0.3
1,530,654	-		DZA65_RS07345	0.52	+0.2
1,530,654	-		DZA65_RS07345	0.52	-0.4
1,530,684	+		DZA65_RS07345	0.57	-1.4
1,530,684	+		DZA65_RS07345	0.57	-0.8
1,530,684	+		DZA65_RS07345	0.57	-2.2
1,530,684	+		DZA65_RS07345	0.57	+0.1
1,530,684	+		DZA65_RS07345	0.57	+0.5
1,530,685	-		DZA65_RS07345	0.58	-0.5
1,530,685	-		DZA65_RS07345	0.58	+0.4
1,530,686	+		DZA65_RS07345	0.58	-0.9
1,530,686	+		DZA65_RS07345	0.58	+0.6
1,530,686	+		DZA65_RS07345	0.58	-2.4
1,530,686	+		DZA65_RS07345	0.58	+0.6
1,530,686	+		DZA65_RS07345	0.58	+1.2
1,530,686	+				-0.1
1,530,687	-		DZA65_RS07345	0.58	-0.2
1,530,687	-		DZA65_RS07345	0.58	-1.4
1,530,714	-		DZA65_RS07345	0.63	+0.6
1,530,741	+		DZA65_RS07345	0.67	+0.9
1,530,822	+		DZA65_RS07345	0.82	-0.4
1,530,822	+		DZA65_RS07345	0.82	+1.6
1,530,822	+		DZA65_RS07345	0.82	-1.0
1,530,823	-		DZA65_RS07345	0.82	-0.6
1,530,823	-		DZA65_RS07345	0.82	-1.1
1,530,823	-		DZA65_RS07345	0.82	+0.3
1,530,836	-		DZA65_RS07345	0.84	-0.4
1,530,913	+				+0.6
1,530,914	-				-0.1
1,530,939	+				+0.2
1,531,022	+				+1.0
1,531,022	+				-1.3
1,531,023	-				+0.1
1,531,023	-				+0.4
1,531,023	-				+0.8
1,531,097	+				+1.2
1,531,112	+				-0.8
1,531,112	+				+0.2
1,531,112	+				+0.7
1,531,113	-				-1.4
1,531,113	-				+0.5
1,531,346	-		DZA65_RS07350	0.25	+0.4
1,531,346	-		DZA65_RS07350	0.25	-0.7
1,531,346	-		DZA65_RS07350	0.25	+0.3
1,531,502	+		DZA65_RS07350	0.39	-0.4
1,531,524	-		DZA65_RS07350	0.41	+0.2
1,531,619	-		DZA65_RS07350	0.50	+0.4
1,531,649	-		DZA65_RS07350	0.53	-1.2
1,531,663	+		DZA65_RS07350	0.54	+1.2
1,531,664	-		DZA65_RS07350	0.54	-0.9
1,531,789	-		DZA65_RS07350	0.65	-0.4
1,531,830	+		DZA65_RS07350	0.69	+1.1
1,531,831	-		DZA65_RS07350	0.69	+0.5
1,531,883	+		DZA65_RS07350	0.74	+0.0
1,531,883	+		DZA65_RS07350	0.74	+0.4
1,531,883	+		DZA65_RS07350	0.74	-1.4
1,531,883	+				+3.2
1,531,883	+		DZA65_RS07350	0.74	+1.1
1,531,883	+		DZA65_RS07350	0.74	-1.2
1,531,883	+		DZA65_RS07350	0.74	+0.2
1,531,884	-		DZA65_RS07350	0.74	-0.5
1,531,921	+		DZA65_RS07350	0.77	+0.6
1,531,921	+		DZA65_RS07350	0.77	+0.6
1,531,921	+		DZA65_RS07350	0.77	+5.8
1,531,921	+		DZA65_RS07350	0.77	-1.2
1,531,921	+		DZA65_RS07350	0.77	-0.8
1,531,921	+		DZA65_RS07350	0.77	-0.3
1,531,922	-		DZA65_RS07350	0.77	-0.6
1,532,050	+		DZA65_RS07350	0.89	+1.0
1,532,050	+		DZA65_RS07350	0.89	-0.8
1,532,050	+		DZA65_RS07350	0.89	+0.6
1,532,050	+		DZA65_RS07350	0.89	-1.2
1,532,050	+		DZA65_RS07350	0.89	-0.7
1,532,050	+		DZA65_RS07350	0.89	+0.9
1,532,051	-		DZA65_RS07350	0.89	-0.3
1,532,051	-		DZA65_RS07350	0.89	+0.4
1,532,051	-		DZA65_RS07350	0.89	+1.1
1,532,051	-		DZA65_RS07350	0.89	-1.1
1,532,051	-		DZA65_RS07350	0.89	-0.1
1,532,085	+				+0.2
1,532,085	+				-0.2
1,532,119	-				+1.1
1,532,119	-				+2.2
1,532,119	-				+0.8
1,532,119	-				-2.4
1,532,119	-				+1.2
1,532,129	-				-0.4
1,532,134	+				-0.4
1,532,135	-				-1.2
1,532,135	-				-2.5
1,532,135	-				+0.6
1,532,230	+				-1.4
1,532,294	-				+1.0
1,532,346	+				-1.5
1,532,346	+				-1.4
1,532,346	+				+0.6
1,532,347	-				+0.2
1,532,347	-				-0.2
1,532,347	-				-1.3
1,532,347	-				-0.6
1,532,347	-				-0.0
1,532,361	+				+1.2
1,532,367	+				-1.1
1,532,367	+				+0.5
1,532,368	-				+0.0
1,532,368	-				-0.0
1,532,384	+				-1.4
1,532,402	-				+1.8
1,532,403	+				+1.7
1,532,403	+				-0.8
1,532,424	-				+0.1
1,532,437	+				-0.4
1,532,437	+				+0.6
1,532,437	+				+1.2
1,532,437	+				+0.6
1,532,437	+				-1.4
1,532,437	+				+1.5
1,532,438	-				-1.5
1,532,438	-				-0.4
1,532,442	+				-1.2
1,532,442	+				+0.0
1,532,443	-				-0.5
1,532,443	-				-0.3
1,532,443	-				+1.1
1,532,443	-				+1.4
1,532,448	+				-0.4
1,532,466	-				+1.4
1,532,467	+				-0.0
1,532,467	+				+0.1
1,532,467	+				-0.4
1,532,467	+				+0.5
1,532,467	+				+0.1
1,532,467	+				-2.0
1,532,467	+				-0.5
1,532,468	-				-0.4
1,532,494	+				-1.0
1,532,494	+				+0.2
1,532,494	+				+0.6
1,532,495	-				+0.2
1,532,495	-				+0.6
1,532,495	-				-0.5
1,532,542	+				-2.0
1,532,543	-				+0.9
1,532,543	-				-0.8
1,532,550	-				-0.1
1,532,550	-				+0.1
1,532,566	-				-0.7
1,532,614	+				+0.0
1,532,615	-				+0.6
1,532,615	-				-1.4
1,532,697	+				+0.6
1,532,720	+				+0.2
1,532,737	-				-1.7
1,532,787	-				-1.8
1,532,799	-				+0.0
1,532,928	+				+2.4
1,532,928	+				-0.4
1,532,929	-				-0.1
1,532,939	+				+0.6
1,532,939	+				-2.2
1,532,940	-				-0.0
1,532,940	-				+1.0
1,532,940	-				-0.0
1,532,940	-				+1.8
1,532,941	+				-0.1
1,532,941	+				+0.0
1,532,941	+				+0.3
1,532,941	+				-1.4
1,532,942	-				-0.6
1,532,942	-				+1.8
1,532,942	-				-0.1
1,532,943	+				+0.0
1,532,943	+				+1.4
1,532,944	-				-1.0
1,532,944	-				+0.2
1,532,944	-				+0.9
1,532,970	-				-0.4
1,532,970	-				-0.7
1,532,986	+				-0.5
1,532,986	+				-0.1
1,532,986	+				-0.6
1,532,986	+				+1.3
1,532,986	+				-0.1
1,532,986	+				+0.0
1,532,986	+				-1.2
1,532,987	-				+0.4
1,532,987	-				+0.0
1,532,987	-				+0.9
1,532,987	-				-1.3
1,532,987	-				-2.0
1,532,987	-				-1.1
1,532,987	-				+0.9
1,532,999	-				+1.2
1,533,001	+				-0.4
1,533,001	+				+0.6
1,533,001	+				+0.6
1,533,001	+				-2.2
1,533,001	+				-0.1
1,533,002	-				+0.0
1,533,010	+				+0.5
1,533,011	-				-1.7
1,533,011	-				+0.0
1,533,038	+				+0.4
1,533,038	+				+0.6
1,533,039	-				-0.8
1,533,049	+		DZA65_RS07355	0.10	+0.4
1,533,049	+		DZA65_RS07355	0.10	+0.6
1,533,050	-		DZA65_RS07355	0.11	+4.7
1,533,050	-		DZA65_RS07355	0.11	+0.6
1,533,143	+		DZA65_RS07355	0.35	+0.1
1,533,143	+		DZA65_RS07355	0.35	+1.1
1,533,143	+		DZA65_RS07355	0.35	+0.4
1,533,143	+		DZA65_RS07355	0.35	-0.0
1,533,143	+		DZA65_RS07355	0.35	-0.2