Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06760

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,400,797	+		DZA65_RS06750	0.57	+0.3
1,400,797	+		DZA65_RS06750	0.57	-0.3
1,400,798	-		DZA65_RS06750	0.57	+0.7
1,400,963	+				+1.0
1,400,963	+				-0.9
1,400,964	-				+0.2
1,400,968	+				-1.4
1,400,969	-				-1.3
1,400,976	+				+0.2
1,400,976	+				-0.3
1,400,977	-				+0.3
1,400,977	-				-1.0
1,400,977	-				+0.7
1,400,977	-				-0.6
1,400,977	-				-0.0
1,400,987	-				+0.2
1,401,017	-				-2.5
1,401,055	+				-0.8
1,401,056	-				+0.5
1,401,069	+				+0.1
1,401,076	+				-0.9
1,401,077	-				+0.1
1,401,077	-				-0.2
1,401,162	+		DZA65_RS06755	0.14	+0.7
1,401,162	+		DZA65_RS06755	0.14	-1.6
1,401,162	+		DZA65_RS06755	0.14	-1.3
1,401,162	+		DZA65_RS06755	0.14	-0.3
1,401,163	-		DZA65_RS06755	0.14	+1.4
1,401,163	-		DZA65_RS06755	0.14	-1.1
1,401,163	-		DZA65_RS06755	0.14	+0.3
1,401,163	-		DZA65_RS06755	0.14	+0.1
1,401,163	-		DZA65_RS06755	0.14	-0.7
1,401,163	-		DZA65_RS06755	0.14	-0.3
1,401,174	+		DZA65_RS06755	0.15	+2.0
1,401,174	+		DZA65_RS06755	0.15	+0.3
1,401,174	+		DZA65_RS06755	0.15	+0.9
1,401,175	-		DZA65_RS06755	0.16	-0.2
1,401,175	-		DZA65_RS06755	0.16	-0.9
1,401,175	-		DZA65_RS06755	0.16	-0.0
1,401,236	+		DZA65_RS06755	0.24	+0.8
1,401,236	+				+1.7
1,401,358	+		DZA65_RS06755	0.42	-1.6
1,401,358	+		DZA65_RS06755	0.42	-0.5
1,401,453	+		DZA65_RS06755	0.56	-1.6
1,401,453	+		DZA65_RS06755	0.56	-1.6
1,401,454	-		DZA65_RS06755	0.56	-0.6
1,401,454	-		DZA65_RS06755	0.56	-2.3
1,401,454	-		DZA65_RS06755	0.56	+0.5
1,401,454	-		DZA65_RS06755	0.56	+0.1
1,401,454	-		DZA65_RS06755	0.56	+0.4
1,401,482	+		DZA65_RS06755	0.60	-0.3
1,401,482	+		DZA65_RS06755	0.60	-1.0
1,401,482	+		DZA65_RS06755	0.60	-1.3
1,401,482	+		DZA65_RS06755	0.60	-0.6
1,401,482	+		DZA65_RS06755	0.60	-1.1
1,401,482	+		DZA65_RS06755	0.60	+0.7
1,401,483	-		DZA65_RS06755	0.60	+0.1
1,401,483	-		DZA65_RS06755	0.60	-0.0
1,401,558	+		DZA65_RS06755	0.71	-0.7
1,401,558	+		DZA65_RS06755	0.71	+0.7
1,401,558	+		DZA65_RS06755	0.71	+0.4
1,401,558	+		DZA65_RS06755	0.71	+0.5
1,401,558	+		DZA65_RS06755	0.71	-0.3
1,401,558	+		DZA65_RS06755	0.71	-1.7
1,401,558	+		DZA65_RS06755	0.71	-0.9
1,401,558	+		DZA65_RS06755	0.71	+0.1
1,401,558	+		DZA65_RS06755	0.71	-1.3
1,401,558	+		DZA65_RS06755	0.71	+0.2
1,401,559	-		DZA65_RS06755	0.71	-0.7
1,401,559	-		DZA65_RS06755	0.71	+0.1
1,401,559	-		DZA65_RS06755	0.71	-0.7
1,401,559	-		DZA65_RS06755	0.71	-0.1
1,401,559	-		DZA65_RS06755	0.71	-1.2
1,401,559	-		DZA65_RS06755	0.71	-0.9
1,401,598	+		DZA65_RS06755	0.77	-0.6
1,401,598	+		DZA65_RS06755	0.77	+0.4
1,401,662	+		DZA65_RS06755	0.86	-1.3
1,401,662	+		DZA65_RS06755	0.86	-0.7
1,401,662	+		DZA65_RS06755	0.86	+0.2
1,401,662	+		DZA65_RS06755	0.86	+0.9
1,401,662	+		DZA65_RS06755	0.86	-0.5
1,401,663	-		DZA65_RS06755	0.86	-1.3
1,401,663	-		DZA65_RS06755	0.86	+0.1
1,401,663	-		DZA65_RS06755	0.86	+0.5
1,401,663	-		DZA65_RS06755	0.86	-1.7
1,401,747	-				-1.1
1,401,747	-				-0.9
1,402,003	+				-0.7
1,402,003	+				+0.9
1,402,003	+				+1.9
1,402,003	+				-0.1
1,402,003	+				+1.1
1,402,003	+				+0.4
1,402,003	+				+0.5
1,402,003	+				-0.4
1,402,004	-				+1.2
1,402,004	-				+0.2
1,402,004	-				-1.7
1,402,004	-				-0.5
1,402,004	-				+1.8
1,402,015	-				-2.5
1,402,079	+		DZA65_RS06760	0.12	+0.0
1,402,079	+		DZA65_RS06760	0.12	+0.9
1,402,079	+		DZA65_RS06760	0.12	+0.7
1,402,079	+		DZA65_RS06760	0.12	-0.9
1,402,079	+		DZA65_RS06760	0.12	-0.9
1,402,080	-		DZA65_RS06760	0.12	-1.1
1,402,080	-		DZA65_RS06760	0.12	+0.7
1,402,080	-		DZA65_RS06760	0.12	-0.3
1,402,080	-		DZA65_RS06760	0.12	-1.1
1,402,139	+		DZA65_RS06760	0.14	-1.6
1,402,139	+		DZA65_RS06760	0.14	+0.4
1,402,140	-		DZA65_RS06760	0.14	-0.3
1,402,140	-		DZA65_RS06760	0.14	+0.0
1,402,140	-		DZA65_RS06760	0.14	-1.0
1,402,176	+		DZA65_RS06760	0.15	-1.3
1,402,176	+		DZA65_RS06760	0.15	+0.1
1,402,176	+		DZA65_RS06760	0.15	+0.4
1,402,176	+		DZA65_RS06760	0.15	+0.5
1,402,176	+		DZA65_RS06760	0.15	-0.7
1,402,176	+		DZA65_RS06760	0.15	+0.7
1,402,176	+		DZA65_RS06760	0.15	+1.0
1,402,177	-		DZA65_RS06760	0.15	-1.6
1,402,177	-		DZA65_RS06760	0.15	+1.7
1,402,177	-		DZA65_RS06760	0.15	-0.3
1,402,177	-		DZA65_RS06760	0.15	-1.9
1,402,177	-		DZA65_RS06760	0.15	-0.2
1,402,179	+		DZA65_RS06760	0.16	+0.3
1,402,179	+		DZA65_RS06760	0.16	-0.1
1,402,179	+		DZA65_RS06760	0.16	+1.0
1,402,179	+		DZA65_RS06760	0.16	+1.6
1,402,179	+		DZA65_RS06760	0.16	-0.1
1,402,179	+		DZA65_RS06760	0.16	+3.0
1,402,180	-		DZA65_RS06760	0.16	+0.7
1,402,180	-				+2.3
1,402,180	-		DZA65_RS06760	0.16	+0.7
1,402,180	-		DZA65_RS06760	0.16	-0.8
1,402,180	-		DZA65_RS06760	0.16	+0.7
1,402,295	-		DZA65_RS06760	0.20	-0.3
1,402,295	-		DZA65_RS06760	0.20	+0.9
1,402,295	-		DZA65_RS06760	0.20	+0.3
1,402,318	-		DZA65_RS06760	0.21	+1.6
1,402,318	-		DZA65_RS06760	0.21	+0.5
1,402,358	+		DZA65_RS06760	0.22	-0.1
1,402,468	+		DZA65_RS06760	0.26	+0.3
1,402,468	+		DZA65_RS06760	0.26	-0.6
1,402,468	+		DZA65_RS06760	0.26	-0.4
1,402,469	-		DZA65_RS06760	0.26	-0.3
1,402,469	-		DZA65_RS06760	0.26	+0.7
1,402,469	-		DZA65_RS06760	0.26	+0.8
1,402,550	-		DZA65_RS06760	0.29	+2.3
1,402,550	-		DZA65_RS06760	0.29	-0.9
1,402,659	+		DZA65_RS06760	0.33	+2.4
1,402,659	+		DZA65_RS06760	0.33	-1.5
1,402,660	-		DZA65_RS06760	0.33	-2.1
1,402,672	+		DZA65_RS06760	0.34	+0.1
1,402,721	+		DZA65_RS06760	0.35	+0.5
1,402,722	-		DZA65_RS06760	0.35	+1.2
1,402,722	-		DZA65_RS06760	0.35	+0.4
1,402,722	-		DZA65_RS06760	0.35	+0.3
1,402,722	-		DZA65_RS06760	0.35	+1.1
1,402,722	-		DZA65_RS06760	0.35	-0.6
1,402,925	+		DZA65_RS06760	0.43	-2.6
1,402,925	+		DZA65_RS06760	0.43	+0.7
1,402,925	+		DZA65_RS06760	0.43	+1.2
1,402,925	+		DZA65_RS06760	0.43	+0.5
1,402,926	-		DZA65_RS06760	0.43	+0.4
1,403,043	-		DZA65_RS06760	0.47	-0.5
1,403,074	-		DZA65_RS06760	0.48	+1.4
1,403,074	-		DZA65_RS06760	0.48	+0.5
1,403,144	+		DZA65_RS06760	0.51	+0.1
1,403,144	+		DZA65_RS06760	0.51	-1.4
1,403,145	-		DZA65_RS06760	0.51	+2.2
1,403,145	-		DZA65_RS06760	0.51	-0.6
1,403,177	+		DZA65_RS06760	0.52	-0.6
1,403,178	-		DZA65_RS06760	0.52	-1.6
1,403,238	+		DZA65_RS06760	0.54	-1.3
1,403,239	-		DZA65_RS06760	0.54	-0.9
1,403,239	-		DZA65_RS06760	0.54	-0.9
1,403,239	-		DZA65_RS06760	0.54	+2.0
1,403,247	+		DZA65_RS06760	0.55	+0.1
1,403,247	+		DZA65_RS06760	0.55	+0.7
1,403,247	+		DZA65_RS06760	0.55	-0.7
1,403,248	-		DZA65_RS06760	0.55	-1.3
1,403,248	-		DZA65_RS06760	0.55	+0.0
1,403,248	-		DZA65_RS06760	0.55	+0.4
1,403,248	-		DZA65_RS06760	0.55	+0.5
1,403,248	-		DZA65_RS06760	0.55	-1.6
1,403,248	-		DZA65_RS06760	0.55	+0.5
1,403,248	-		DZA65_RS06760	0.55	-0.5
1,403,277	-		DZA65_RS06760	0.56	-0.9
1,403,461	+		DZA65_RS06760	0.63	+0.7
1,403,462	-		DZA65_RS06760	0.63	-0.6
1,403,462	-		DZA65_RS06760	0.63	-0.8
1,403,462	-		DZA65_RS06760	0.63	-0.1
1,403,627	+		DZA65_RS06760	0.69	-0.3
1,403,627	+		DZA65_RS06760	0.69	-0.3
1,403,677	-		DZA65_RS06760	0.70	+0.1
1,403,891	+		DZA65_RS06760	0.78	+1.6
1,403,892	-		DZA65_RS06760	0.78	+1.3
1,403,892	-		DZA65_RS06760	0.78	-1.5
1,403,892	-		DZA65_RS06760	0.78	-0.6
1,404,225	-				-0.7
1,404,365	+				-0.4
1,404,365	+				-1.7
1,404,521	+				+1.7
1,404,521	+				-0.6
1,404,524	+				+1.3
1,404,524	+				-0.6
1,404,524	+				-0.4
1,404,524	+				-1.9
1,404,524	+				-0.0
1,404,524	+				-1.5
1,404,524	+				+0.6
1,404,524	+				+0.3
1,404,524	+				-0.9
1,404,524	+				-0.1
1,404,524	+				+0.1
1,404,525	-				-1.6
1,404,525	-				-0.2
1,404,525	-				-1.1
1,404,525	-				-1.2
1,404,525	-				-2.1
1,404,525	-				-0.7
1,404,525	-				+0.1
1,404,525	-				-0.5
1,404,525	-				-1.0
1,404,525	-				-0.1
1,404,569	+				-1.3
1,404,569	+				-1.3
1,404,569	+				-0.7
1,404,569	+				+1.1
1,404,570	-				+2.0
1,404,573	+				+0.2
1,404,573	+				-0.6
1,404,573	+				+0.1
1,404,573	+				-0.0
1,404,574	-				+1.3
1,404,574	-				+0.7
1,404,579	+				-0.0
1,404,605	+		DZA65_RS06765	0.12	-0.7
1,404,625	+		DZA65_RS06765	0.15	-0.4
1,404,625	+		DZA65_RS06765	0.15	+0.0
1,404,625	+		DZA65_RS06765	0.15	+0.2
1,404,625	+		DZA65_RS06765	0.15	+1.7
1,404,625	+		DZA65_RS06765	0.15	-0.7
1,404,625	+		DZA65_RS06765	0.15	-0.5
1,404,625	+		DZA65_RS06765	0.15	+0.4
1,404,625	+		DZA65_RS06765	0.15	-1.3
1,404,625	+		DZA65_RS06765	0.15	+1.1
1,404,626	-		DZA65_RS06765	0.15	+0.3
1,404,626	-				+0.3
1,404,626	-		DZA65_RS06765	0.15	-0.7
1,404,626	-		DZA65_RS06765	0.15	-1.9
1,404,626	-		DZA65_RS06765	0.15	+0.3
1,404,626	-		DZA65_RS06765	0.15	-0.4
1,404,626	-		DZA65_RS06765	0.15	-0.2
1,404,626	-		DZA65_RS06765	0.15	+0.1
1,404,626	-		DZA65_RS06765	0.15	-1.3
1,404,626	-		DZA65_RS06765	0.15	-0.1
1,404,629	+		DZA65_RS06765	0.16	-1.3
1,404,629	+		DZA65_RS06765	0.16	+0.3
1,404,629	+		DZA65_RS06765	0.16	-1.3
1,404,629	+		DZA65_RS06765	0.16	-2.1
1,404,629	+		DZA65_RS06765	0.16	-0.3
1,404,629	+		DZA65_RS06765	0.16	+1.4
1,404,629	+		DZA65_RS06765	0.16	+0.9
1,404,629	+		DZA65_RS06765	0.16	-2.5
1,404,629	+		DZA65_RS06765	0.16	+1.0
1,404,629	+		DZA65_RS06765	0.16	+0.7
1,404,629	+		DZA65_RS06765	0.16	+0.7
1,404,629	+		DZA65_RS06765	0.16	-1.0
1,404,629	+		DZA65_RS06765	0.16	+0.5
1,404,630	-		DZA65_RS06765	0.16	-0.1
1,404,630	-		DZA65_RS06765	0.16	+0.3
1,404,630	-		DZA65_RS06765	0.16	-0.2
1,404,630	-		DZA65_RS06765	0.16	-0.3
1,404,630	-		DZA65_RS06765	0.16	-0.0
1,404,630	-		DZA65_RS06765	0.16	-1.5
1,404,630	-		DZA65_RS06765	0.16	+0.3
1,404,630	-		DZA65_RS06765	0.16	+0.1
1,404,630	-		DZA65_RS06765	0.16	+0.7
1,404,630	-		DZA65_RS06765	0.16	-0.7
1,404,630	-		DZA65_RS06765	0.16	-1.3
1,404,630	-		DZA65_RS06765	0.16	-0.1
1,404,630	-		DZA65_RS06765	0.16	-0.4
1,404,630	-		DZA65_RS06765	0.16	+1.0
1,404,630	-		DZA65_RS06765	0.16	+1.1
1,404,630	-		DZA65_RS06765	0.16	+0.7
1,404,631	+		DZA65_RS06765	0.16	-1.3
1,404,631	+		DZA65_RS06765	0.16	-1.3
1,404,632	-		DZA65_RS06765	0.16	+0.9
1,404,651	+		DZA65_RS06765	0.20	+1.9
1,404,652	-		DZA65_RS06765	0.20	-0.7
1,404,652	-		DZA65_RS06765	0.20	-0.6
1,404,652	-		DZA65_RS06765	0.20	-0.8
1,404,652	-		DZA65_RS06765	0.20	-1.9
1,404,762	+		DZA65_RS06765	0.39	+0.1
1,404,883	+		DZA65_RS06765	0.60	+0.1
1,404,883	+		DZA65_RS06765	0.60	-0.0
1,404,884	-		DZA65_RS06765	0.60	-0.4
1,405,080	+				+0.8
1,405,083	+				+0.7
1,405,083	+				-1.1
1,405,083	+				-0.9
1,405,083	+				-1.3
1,405,084	-				+0.5
1,405,084	-				+1.3
1,405,084	-				-0.5
1,405,105	+				+0.5
1,405,105	+				+0.1
1,405,105	+				+0.7
1,405,105	+				-0.3
1,405,105	+				-1.5
1,405,105	+				-0.1
1,405,106	-				-0.3
1,405,106	-				+0.7
1,405,106	-				-0.5
1,405,106	-				-1.9
1,405,106	-				-0.6
1,405,106	-				-1.1
1,405,106	-				+0.7
1,405,115	+				+1.6
1,405,115	+				+0.4
1,405,115	+				+1.0
1,405,115	+				-0.3
1,405,115	+				-0.4
1,405,115	+				+0.5
1,405,116	-				-0.1
1,405,116	-				-0.1
1,405,116	-				-0.3
1,405,119	+				-0.7
1,405,119	+				+0.4
1,405,119	+				-0.5
1,405,120	-				+0.3
1,405,120	-				-0.6
1,405,120	-				+1.1
1,405,253	+				-0.1
1,405,253	+				+0.3
1,405,253	+				+0.7
1,405,254	-				+1.7
1,405,254	-				+2.7
1,405,254	-				+0.7
1,405,255	+				-0.6
1,405,255	+				+0.4
1,405,256	-				+1.1
1,405,256	-				+0.3
1,405,295	+				-0.6
1,405,296	-				-2.6
1,405,381	+		DZA65_RS06770	0.12	-0.9
1,405,418	-		DZA65_RS06770	0.14	+0.5
1,405,418	-		DZA65_RS06770	0.14	-0.5
1,405,418	-		DZA65_RS06770	0.14	-1.9
1,405,418	-		DZA65_RS06770	0.14	-0.7