Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05945

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,224,927	-		DZA65_RS05940	0.14	-0.0
1,224,936	+		DZA65_RS05940	0.15	+0.6
1,224,936	+		DZA65_RS05940	0.15	+0.8
1,224,936	+		DZA65_RS05940	0.15	+0.1
1,224,936	+		DZA65_RS05940	0.15	+1.2
1,224,936	+		DZA65_RS05940	0.15	+0.9
1,224,936	+		DZA65_RS05940	0.15	+0.5
1,224,937	-		DZA65_RS05940	0.15	-1.6
1,224,937	-		DZA65_RS05940	0.15	+1.8
1,224,937	-		DZA65_RS05940	0.15	-1.1
1,224,937	-		DZA65_RS05940	0.15	-0.4
1,224,937	-		DZA65_RS05940	0.15	+1.1
1,224,938	+		DZA65_RS05940	0.15	+1.3
1,224,938	+		DZA65_RS05940	0.15	+0.0
1,224,938	+		DZA65_RS05940	0.15	+0.5
1,224,938	+		DZA65_RS05940	0.15	-2.0
1,224,938	+		DZA65_RS05940	0.15	+0.3
1,224,938	+		DZA65_RS05940	0.15	-1.2
1,224,938	+		DZA65_RS05940	0.15	+1.2
1,224,938	+		DZA65_RS05940	0.15	-0.4
1,224,938	+		DZA65_RS05940	0.15	-0.6
1,224,939	-		DZA65_RS05940	0.15	+0.8
1,224,939	-		DZA65_RS05940	0.15	-0.3
1,224,939	-		DZA65_RS05940	0.15	-1.8
1,224,939	-		DZA65_RS05940	0.15	+0.6
1,224,991	-		DZA65_RS05940	0.21	-2.4
1,225,025	+		DZA65_RS05940	0.24	-0.2
1,225,025	+		DZA65_RS05940	0.24	+0.3
1,225,025	+		DZA65_RS05940	0.24	-0.8
1,225,025	+		DZA65_RS05940	0.24	-0.1
1,225,025	+		DZA65_RS05940	0.24	+0.4
1,225,025	+		DZA65_RS05940	0.24	+0.8
1,225,025	+		DZA65_RS05940	0.24	+0.8
1,225,025	+		DZA65_RS05940	0.24	-0.7
1,225,026	-		DZA65_RS05940	0.24	+2.1
1,225,026	-		DZA65_RS05940	0.24	-0.8
1,225,026	-		DZA65_RS05940	0.24	+0.2
1,225,026	-		DZA65_RS05940	0.24	-0.2
1,225,026	-		DZA65_RS05940	0.24	-0.9
1,225,026	-		DZA65_RS05940	0.24	+0.1
1,225,026	-		DZA65_RS05940	0.24	-0.1
1,225,026	-		DZA65_RS05940	0.24	-1.6
1,225,026	-		DZA65_RS05940	0.24	-0.1
1,225,026	-		DZA65_RS05940	0.24	+0.2
1,225,050	+		DZA65_RS05940	0.27	+0.8
1,225,164	+		DZA65_RS05940	0.39	+0.8
1,225,164	+		DZA65_RS05940	0.39	-1.8
1,225,216	-		DZA65_RS05940	0.45	+0.6
1,225,302	+		DZA65_RS05940	0.54	+1.1
1,225,303	-		DZA65_RS05940	0.54	+1.2
1,225,441	+		DZA65_RS05940	0.69	-0.6
1,225,441	+		DZA65_RS05940	0.69	+0.8
1,225,441	+		DZA65_RS05940	0.69	+0.0
1,225,441	+		DZA65_RS05940	0.69	-1.0
1,225,442	-		DZA65_RS05940	0.69	-2.4
1,225,488	+		DZA65_RS05940	0.74	-1.3
1,225,495	+		DZA65_RS05940	0.75	+0.6
1,225,496	-		DZA65_RS05940	0.75	+0.5
1,225,569	+		DZA65_RS05940	0.83	-1.2
1,225,569	+		DZA65_RS05940	0.83	+0.7
1,225,569	+		DZA65_RS05940	0.83	-0.4
1,225,569	+		DZA65_RS05940	0.83	-1.6
1,225,575	+		DZA65_RS05940	0.84	-0.8
1,225,575	+		DZA65_RS05940	0.84	+0.5
1,225,575	+		DZA65_RS05940	0.84	+0.3
1,225,575	+		DZA65_RS05940	0.84	-1.1
1,225,576	-		DZA65_RS05940	0.84	+0.8
1,225,576	-		DZA65_RS05940	0.84	+0.8
1,225,576	-		DZA65_RS05940	0.84	+0.1
1,225,599	+		DZA65_RS05940	0.87	-0.3
1,225,600	-		DZA65_RS05940	0.87	+0.0
1,225,630	-		DZA65_RS05940	0.90	-0.2
1,225,645	+				-0.7
1,225,645	+				+0.1
1,225,645	+				-0.6
1,225,645	+				+0.8
1,225,645	+				-0.2
1,225,645	+				+0.8
1,225,645	+				+0.9
1,225,645	+				+0.8
1,225,645	+				+0.1
1,225,645	+				+0.2
1,225,645	+				-0.6
1,225,645	+				+0.3
1,225,646	-				+0.2
1,225,666	+				-1.8
1,225,667	-				+0.8
1,225,667	-				+1.3
1,225,769	+				+2.3
1,225,769	+				+0.3
1,225,769	+				+3.9
1,225,770	-				-0.6
1,225,770	-				-0.6
1,225,770	-				+2.1
1,225,774	+				+0.4
1,225,775	-				-0.8
1,225,779	+				-1.0
1,225,779	+				+0.0
1,225,779	+				+1.2
1,225,779	+				-1.8
1,225,779	+				-0.4
1,225,842	+				-0.2
1,225,842	+				+0.4
1,225,843	-				+0.6
1,225,843	-				-0.7
1,225,910	-				+1.1
1,225,943	-				-0.8
1,225,993	+		DZA65_RS05945	0.20	-0.2
1,225,994	-		DZA65_RS05945	0.20	-3.2
1,226,035	+		DZA65_RS05945	0.28	-1.0
1,226,036	-		DZA65_RS05945	0.29	-0.2
1,226,036	-		DZA65_RS05945	0.29	-0.7
1,226,168	+		DZA65_RS05945	0.55	-1.0
1,226,169	-		DZA65_RS05945	0.56	-0.4
1,226,322	+		DZA65_RS05945	0.87	-0.5
1,226,322	+		DZA65_RS05945	0.87	-0.1
1,226,323	-		DZA65_RS05945	0.87	-1.4
1,226,371	+				+1.2
1,226,394	+				+0.0
1,226,394	+				+0.0
1,226,436	+				-1.3
1,226,466	+				-1.9
1,226,467	-				-0.5
1,226,467	-				+0.2
1,226,539	-				-1.4
1,226,620	+				-0.6
1,226,620	+				+1.3
1,226,620	+				-0.7
1,226,621	-				+0.0
1,226,621	-				+1.0
1,226,621	-				+0.1
1,226,621	-				+0.5
1,226,626	-				+1.2
1,226,629	+				-1.2
1,226,629	+				-2.0
1,226,629	+				+0.4
1,226,629	+				+0.3
1,226,629	+				+0.1
1,226,629	+				+0.8
1,226,630	-				-1.8
1,226,630	-				+0.2
1,226,630	-				-0.2
1,226,630	-				+1.2
1,226,630	-				-1.1
1,226,630	-				+0.0
1,226,630	-				+0.4
1,226,640	-				-0.0
1,226,640	-				-1.6
1,226,640	-				-0.7
1,226,643	+				-1.0
1,226,643	+				+0.6
1,226,643	+				+0.0
1,226,643	+				-1.0
1,226,643	+				-0.4
1,226,644	-				+0.9
1,226,687	+				+0.8
1,226,687	+				+0.6
1,226,687	+				+0.8
1,226,688	-				+0.3
1,226,688	-				+2.3
1,226,706	+				+0.8
1,226,706	+				-1.5
1,226,706	+				+1.0
1,226,706	+				+0.1
1,226,706	+				+0.3
1,226,707	-				-0.6
1,226,707	-				-0.1
1,226,759	+				-0.6
1,226,775	+				-1.0
1,226,776	-				+0.5
1,226,776	-				+0.6
1,226,776	-				+0.0
1,226,778	-				-1.0
1,226,778	-				+0.5
1,226,834	+				+1.5
1,226,835	-				+0.3
1,226,849	+				+1.4
1,226,876	+				+0.9
1,226,876	+				-0.2
1,226,877	-				-0.2
1,226,877	-				-0.5
1,226,882	+				+0.1
1,226,882	+				+0.8
1,226,882	+				+0.2
1,226,882	+				-1.0
1,226,882	+				-0.8
1,226,882	+				-0.4
1,226,882	+				-0.2
1,226,882	+				+1.8
1,226,882	+				-0.2
1,226,882	+				-0.2
1,226,882	+				-0.2
1,226,882	+				-0.6
1,226,882	+				+0.8
1,226,882	+				+0.0
1,226,882	+				-0.5
1,226,882	+				+0.8
1,226,882	+				+1.2
1,226,883	-				+0.3
1,226,883	-				-1.4
1,226,883	-				+0.8
1,226,883	-				-0.7
1,226,883	-				-1.7
1,226,883	-				+0.3
1,226,883	-				-0.0
1,226,883	-				+0.9
1,226,883	-				-0.2
1,226,883	-				+1.0
1,226,883	-				-0.1
1,226,924	+		DZA65_RS05950	0.11	-0.8
1,226,924	+		DZA65_RS05950	0.11	+1.2
1,226,924	+		DZA65_RS05950	0.11	-1.8
1,226,924	+		DZA65_RS05950	0.11	+0.0
1,226,954	+		DZA65_RS05950	0.14	+0.1
1,226,955	-		DZA65_RS05950	0.14	-0.0
1,226,955	-		DZA65_RS05950	0.14	+0.3
1,227,041	+		DZA65_RS05950	0.21	-0.2
1,227,074	+		DZA65_RS05950	0.24	-0.2
1,227,074	+		DZA65_RS05950	0.24	-1.2
1,227,111	+		DZA65_RS05950	0.27	+0.8
1,227,112	-		DZA65_RS05950	0.27	-0.7
1,227,132	+		DZA65_RS05950	0.29	-0.1
1,227,132	+		DZA65_RS05950	0.29	+0.3
1,227,132	+		DZA65_RS05950	0.29	+0.3
1,227,133	-		DZA65_RS05950	0.29	+0.1
1,227,139	-		DZA65_RS05950	0.29	-1.8
1,227,145	+		DZA65_RS05950	0.30	-0.6
1,227,146	-		DZA65_RS05950	0.30	+0.1
1,227,146	-		DZA65_RS05950	0.30	+0.1
1,227,176	+		DZA65_RS05950	0.32	+2.1
1,227,176	+		DZA65_RS05950	0.32	+0.1
1,227,176	+		DZA65_RS05950	0.32	+0.3
1,227,177	-		DZA65_RS05950	0.32	-1.0
1,227,179	+		DZA65_RS05950	0.33	+0.8
1,227,179	+				+0.8
1,227,180	-		DZA65_RS05950	0.33	+1.8
1,227,195	+		DZA65_RS05950	0.34	-0.8
1,227,195	+				+0.8
1,227,195	+		DZA65_RS05950	0.34	-0.6
1,227,195	+		DZA65_RS05950	0.34	-0.6
1,227,195	+		DZA65_RS05950	0.34	-0.6
1,227,195	+		DZA65_RS05950	0.34	-0.6
1,227,195	+		DZA65_RS05950	0.34	+0.2
1,227,195	+		DZA65_RS05950	0.34	-0.4
1,227,196	-		DZA65_RS05950	0.34	-1.0
1,227,196	-		DZA65_RS05950	0.34	-1.0
1,227,196	-		DZA65_RS05950	0.34	+0.2
1,227,196	-		DZA65_RS05950	0.34	+0.4
1,227,196	-		DZA65_RS05950	0.34	+1.4
1,227,196	-		DZA65_RS05950	0.34	+0.2
1,227,196	-		DZA65_RS05950	0.34	-0.2
1,227,196	-		DZA65_RS05950	0.34	-1.1
1,227,196	-		DZA65_RS05950	0.34	-0.8
1,227,196	-		DZA65_RS05950	0.34	+0.7
1,227,197	+		DZA65_RS05950	0.34	-0.2
1,227,197	+		DZA65_RS05950	0.34	-0.7
1,227,198	-				+1.8
1,227,198	-		DZA65_RS05950	0.34	-1.0
1,227,200	+		DZA65_RS05950	0.34	+1.8
1,227,201	-		DZA65_RS05950	0.35	-0.4
1,227,288	+		DZA65_RS05950	0.42	-0.2
1,227,288	+		DZA65_RS05950	0.42	+0.6
1,227,288	+		DZA65_RS05950	0.42	+0.4
1,227,288	+		DZA65_RS05950	0.42	+0.3
1,227,289	-		DZA65_RS05950	0.42	-0.4
1,227,289	-		DZA65_RS05950	0.42	+0.4
1,227,294	+		DZA65_RS05950	0.42	+0.0
1,227,294	+		DZA65_RS05950	0.42	+1.8
1,227,294	+		DZA65_RS05950	0.42	-0.2
1,227,294	+				+0.8
1,227,294	+		DZA65_RS05950	0.42	+0.8
1,227,295	-		DZA65_RS05950	0.42	-2.0
1,227,336	-		DZA65_RS05950	0.46	+0.0
1,227,375	+		DZA65_RS05950	0.49	-0.6