Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05625

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,155,078	+		DZA65_RS05615	0.61	-0.2
1,155,078	+		DZA65_RS05615	0.61	-0.2
1,155,079	-		DZA65_RS05615	0.61	-2.7
1,155,079	-		DZA65_RS05615	0.61	-1.6
1,155,143	+		DZA65_RS05615	0.69	-0.1
1,155,144	-		DZA65_RS05615	0.69	+0.2
1,155,149	-		DZA65_RS05615	0.69	-2.2
1,155,202	+		DZA65_RS05615	0.76	+3.2
1,155,329	+				+1.6
1,155,341	-				+0.4
1,155,341	-				-0.5
1,155,368	+				+0.4
1,155,421	+				-0.1
1,155,422	-				-0.6
1,155,422	-				-1.2
1,155,425	+				-2.6
1,155,425	+				-3.3
1,155,425	+				-1.0
1,155,426	-				+0.2
1,155,558	+		DZA65_RS05620	0.27	-0.5
1,155,558	+		DZA65_RS05620	0.27	-0.2
1,155,588	-		DZA65_RS05620	0.32	+0.6
1,155,663	-		DZA65_RS05620	0.46	-1.8
1,155,683	+		DZA65_RS05620	0.49	-1.7
1,155,721	-		DZA65_RS05620	0.56	+0.2
1,155,821	+		DZA65_RS05620	0.74	-2.6
1,155,822	-		DZA65_RS05620	0.74	+1.1
1,155,822	-		DZA65_RS05620	0.74	-1.0
1,155,822	-		DZA65_RS05620	0.74	+0.8
1,155,909	+		DZA65_RS05620	0.90	+1.4
1,155,917	+				+0.8
1,155,918	-				-1.2
1,155,944	-				-1.6
1,156,004	+				+0.3
1,156,149	+		DZA65_RS05625	0.12	+0.1
1,156,150	-		DZA65_RS05625	0.12	+0.3
1,156,289	+		DZA65_RS05625	0.22	-0.8
1,156,317	+		DZA65_RS05625	0.25	+1.3
1,156,319	+		DZA65_RS05625	0.25	+0.2
1,156,319	+		DZA65_RS05625	0.25	+0.8
1,156,321	+		DZA65_RS05625	0.25	+0.3
1,156,321	+		DZA65_RS05625	0.25	-0.1
1,156,322	-		DZA65_RS05625	0.25	+1.2
1,156,332	+		DZA65_RS05625	0.26	-0.0
1,156,430	-		DZA65_RS05625	0.33	+1.0
1,156,434	+		DZA65_RS05625	0.33	-0.8
1,156,486	+		DZA65_RS05625	0.37	-0.2
1,156,510	-		DZA65_RS05625	0.39	-0.2
1,156,532	+		DZA65_RS05625	0.41	+1.4
1,156,536	+		DZA65_RS05625	0.41	+0.8
1,156,537	-		DZA65_RS05625	0.41	+0.5
1,156,541	-		DZA65_RS05625	0.41	-1.2
1,156,568	+		DZA65_RS05625	0.43	+1.0
1,156,708	+		DZA65_RS05625	0.54	-0.7
1,156,742	+		DZA65_RS05625	0.56	-0.6
1,156,798	+		DZA65_RS05625	0.60	-0.4
1,156,804	-		DZA65_RS05625	0.61	-0.0
1,156,804	-		DZA65_RS05625	0.61	+0.6
1,156,804	-		DZA65_RS05625	0.61	-0.8
1,156,804	-		DZA65_RS05625	0.61	+0.4
1,156,918	+		DZA65_RS05625	0.69	+0.6
1,156,919	-		DZA65_RS05625	0.70	+0.8
1,156,919	-		DZA65_RS05625	0.70	-0.2
1,156,919	-		DZA65_RS05625	0.70	+0.8
1,156,922	+		DZA65_RS05625	0.70	+1.1
1,156,922	+		DZA65_RS05625	0.70	-1.0
1,156,934	+		DZA65_RS05625	0.71	+1.5
1,156,935	-		DZA65_RS05625	0.71	+0.0
1,156,935	-		DZA65_RS05625	0.71	-0.6
1,156,935	-		DZA65_RS05625	0.71	+0.8
1,156,939	+		DZA65_RS05625	0.71	-0.7
1,156,940	-		DZA65_RS05625	0.71	+2.9
1,156,940	-		DZA65_RS05625	0.71	-2.9
1,156,940	-		DZA65_RS05625	0.71	-0.3
1,156,940	-		DZA65_RS05625	0.71	-0.6
1,156,959	+		DZA65_RS05625	0.72	+0.2
1,157,016	-		DZA65_RS05625	0.77	+0.2
1,157,021	+		DZA65_RS05625	0.77	-0.1
1,157,022	-		DZA65_RS05625	0.77	+0.2
1,157,027	+		DZA65_RS05625	0.78	-2.6
1,157,027	+		DZA65_RS05625	0.78	-2.7
1,157,028	-		DZA65_RS05625	0.78	+0.8
1,157,028	-		DZA65_RS05625	0.78	+0.6
1,157,028	-		DZA65_RS05625	0.78	+2.0
1,157,028	-		DZA65_RS05625	0.78	-0.1
1,157,091	+		DZA65_RS05625	0.82	+0.6
1,157,092	-		DZA65_RS05625	0.82	-1.6
1,157,113	+		DZA65_RS05625	0.84	-0.2
1,157,114	-		DZA65_RS05625	0.84	-0.5
1,157,139	-		DZA65_RS05625	0.86	-0.5
1,157,199	-				-0.8
1,157,247	-				+0.5
1,157,285	-				-0.5
1,157,368	-				-1.1
1,157,371	+				+1.1
1,157,371	+				-1.1
1,157,371	+				+0.5
1,157,371	+				+0.4
1,157,372	-				-1.0
1,157,372	-				-0.7
1,157,374	+				-0.6
1,157,424	-		DZA65_RS05630	0.14	-0.0
1,157,424	-		DZA65_RS05630	0.14	-0.2
1,157,433	-		DZA65_RS05630	0.15	+0.2
1,157,433	-		DZA65_RS05630	0.15	+1.9
1,157,480	+		DZA65_RS05630	0.22	+1.3
1,157,492	-		DZA65_RS05630	0.24	+2.1
1,157,492	-		DZA65_RS05630	0.24	-1.7
1,157,494	-		DZA65_RS05630	0.25	-0.4
1,157,503	-		DZA65_RS05630	0.26	+0.2
1,157,509	+		DZA65_RS05630	0.27	-0.2
1,157,513	-		DZA65_RS05630	0.27	-0.8
1,157,513	-		DZA65_RS05630	0.27	+1.8
1,157,585	-		DZA65_RS05630	0.38	+0.8
1,157,585	-		DZA65_RS05630	0.38	+0.6
1,157,587	+		DZA65_RS05630	0.38	+0.6
1,157,587	+		DZA65_RS05630	0.38	+1.2
1,157,588	-		DZA65_RS05630	0.39	-1.8
1,157,588	-		DZA65_RS05630	0.39	-0.2
1,157,588	-		DZA65_RS05630	0.39	+0.0
1,157,594	+		DZA65_RS05630	0.39	+1.2
1,157,594	+		DZA65_RS05630	0.39	+1.2
1,157,595	-		DZA65_RS05630	0.40	+0.9
1,157,596	+		DZA65_RS05630	0.40	-1.1
1,157,597	-		DZA65_RS05630	0.40	+0.2
1,157,597	-		DZA65_RS05630	0.40	-0.4
1,157,615	+		DZA65_RS05630	0.43	-0.3
1,157,616	-		DZA65_RS05630	0.43	+1.8
1,157,652	-		DZA65_RS05630	0.48	+0.2
1,157,670	+		DZA65_RS05630	0.51	-0.0
1,157,683	+		DZA65_RS05630	0.53	-0.7
1,157,683	+		DZA65_RS05630	0.53	-0.5
1,157,683	+		DZA65_RS05630	0.53	-1.2
1,157,683	+		DZA65_RS05630	0.53	+0.8
1,157,683	+		DZA65_RS05630	0.53	-0.6
1,157,683	+		DZA65_RS05630	0.53	-0.2
1,157,683	+		DZA65_RS05630	0.53	+0.3
1,157,683	+		DZA65_RS05630	0.53	+0.5
1,157,684	-		DZA65_RS05630	0.53	+0.3
1,157,684	-		DZA65_RS05630	0.53	-0.2
1,157,686	-		DZA65_RS05630	0.53	+0.8
1,157,686	-		DZA65_RS05630	0.53	-1.0
1,157,686	-		DZA65_RS05630	0.53	+0.4
1,157,705	+		DZA65_RS05630	0.56	+0.8
1,157,706	-		DZA65_RS05630	0.56	+1.2
1,157,726	-		DZA65_RS05630	0.59	-0.0
1,157,727	+		DZA65_RS05630	0.59	-0.0
1,157,727	+		DZA65_RS05630	0.59	+1.3
1,157,728	-		DZA65_RS05630	0.59	-0.5
1,157,728	-		DZA65_RS05630	0.59	+0.1
1,157,728	-		DZA65_RS05630	0.59	+0.5
1,157,774	+		DZA65_RS05630	0.66	+0.2
1,157,774	+		DZA65_RS05630	0.66	-0.1
1,157,817	-		DZA65_RS05630	0.73	+0.2
1,157,828	-		DZA65_RS05630	0.74	-0.0
1,157,856	-		DZA65_RS05630	0.79	-2.0
1,157,870	-		DZA65_RS05630	0.81	-0.6
1,157,876	+		DZA65_RS05630	0.82	+0.3
1,157,876	+		DZA65_RS05630	0.82	+0.5
1,157,923	+		DZA65_RS05630	0.89	-0.2
1,157,923	+		DZA65_RS05630	0.89	+0.9
1,157,923	+		DZA65_RS05630	0.89	+1.5
1,157,924	-		DZA65_RS05630	0.89	-0.0
1,157,966	+				+1.8
1,157,998	+				+1.6
1,158,004	-				+0.8
1,158,022	+				-0.3
1,158,036	+				-1.4
1,158,037	-				-0.1
1,158,037	-				+0.8
1,158,037	-				+0.1
1,158,102	+				+1.0
1,158,102	+				-0.1
1,158,102	+				+1.5
1,158,102	+				-0.2
1,158,102	+				-0.0
1,158,102	+				+0.2
1,158,103	-				-0.5
1,158,103	-				+0.5
1,158,103	-				-0.2
1,158,103	-				+0.8
1,158,103	-				+0.8
1,158,103	-				-0.2
1,158,103	-				-0.4
1,158,212	+		DZA65_RS05635	0.17	-0.8
1,158,213	-		DZA65_RS05635	0.17	+1.0
1,158,227	+		DZA65_RS05635	0.19	-1.6
1,158,227	+		DZA65_RS05635	0.19	-0.8
1,158,267	+		DZA65_RS05635	0.22	+1.8
1,158,267	+		DZA65_RS05635	0.22	+1.5
1,158,281	+		DZA65_RS05635	0.23	+0.1
1,158,305	-		DZA65_RS05635	0.25	-0.4