Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05185

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,064,834	+				-0.7
1,064,839	-				-1.1
1,064,867	+				-0.5
1,064,868	-				-1.2
1,065,089	+		DZA65_RS05175	0.41	+0.5
1,065,097	-		DZA65_RS05175	0.43	-0.2
1,065,105	-		DZA65_RS05175	0.44	-0.5
1,065,135	-		DZA65_RS05175	0.51	+0.8
1,065,151	+		DZA65_RS05175	0.55	-0.2
1,065,167	+		DZA65_RS05175	0.58	-0.2
1,065,168	-		DZA65_RS05175	0.58	+1.1
1,065,204	+				-0.8
1,065,310	+		DZA65_RS05175	0.90	-0.4
1,065,310	+		DZA65_RS05175	0.90	+0.3
1,065,310	+		DZA65_RS05175	0.90	-2.4
1,065,311	-				+0.8
1,065,324	-				+1.1
1,065,324	-				+0.5
1,065,338	+				-0.8
1,065,339	-				+0.2
1,065,362	-				+0.2
1,065,362	-				-0.8
1,065,401	-				+0.3
1,065,404	+				+0.1
1,065,404	+				+0.5
1,065,404	+				+0.1
1,065,404	+				+0.6
1,065,404	+				-1.0
1,065,409	+				-1.2
1,065,413	+				+0.6
1,065,414	-				+0.8
1,065,414	-				-0.5
1,065,417	+				-2.0
1,065,426	+				-0.7
1,065,426	+				+0.4
1,065,426	+				-0.8
1,065,426	+				-0.2
1,065,426	+				-0.2
1,065,426	+				+1.5
1,065,427	-				+0.8
1,065,427	-				-0.5
1,065,427	-				-0.9
1,065,427	-				-0.3
1,065,428	+				-0.2
1,065,428	+				-2.2
1,065,428	+				-2.2
1,065,429	-				-0.4
1,065,429	-				+1.0
1,065,433	+				-0.8
1,065,433	+				-1.3
1,065,434	-				-0.2
1,065,521	+		DZA65_RS05180	0.24	-1.5
1,065,522	-		DZA65_RS05180	0.24	-0.4
1,065,555	+		DZA65_RS05180	0.36	-0.0
1,065,556	-		DZA65_RS05180	0.36	-0.7
1,065,556	-		DZA65_RS05180	0.36	+0.3
1,065,575	+		DZA65_RS05180	0.43	+1.0
1,065,588	-		DZA65_RS05180	0.48	+0.7
1,065,588	-		DZA65_RS05180	0.48	+1.1
1,065,632	-				-0.2
1,065,632	-		DZA65_RS05180	0.64	+0.8
1,065,632	-		DZA65_RS05180	0.64	-0.4
1,065,671	+		DZA65_RS05180	0.78	-2.9
1,065,671	+		DZA65_RS05180	0.78	+0.9
1,065,671	+		DZA65_RS05180	0.78	-0.6
1,065,671	+		DZA65_RS05180	0.78	-0.7
1,065,671	+		DZA65_RS05180	0.78	-0.1
1,065,671	+		DZA65_RS05180	0.78	-0.8
1,065,672	-		DZA65_RS05180	0.78	-0.4
1,065,672	-		DZA65_RS05180	0.78	-0.6
1,065,672	-		DZA65_RS05180	0.78	-1.5
1,065,672	-		DZA65_RS05180	0.78	+0.0
1,065,672	-		DZA65_RS05180	0.78	-0.4
1,065,697	+		DZA65_RS05180	0.87	+0.8
1,065,698	-		DZA65_RS05180	0.88	+0.2
1,065,700	+		DZA65_RS05180	0.88	+0.3
1,065,700	+		DZA65_RS05180	0.88	+0.2
1,065,701	-		DZA65_RS05180	0.89	+0.5
1,065,701	-		DZA65_RS05180	0.89	+0.5
1,065,701	-		DZA65_RS05180	0.89	+0.8
1,065,742	-				-0.4
1,065,742	-				+0.8
1,065,801	+		DZA65_RS05185	0.30	+1.7
1,065,801	+		DZA65_RS05185	0.30	-0.4
1,065,801	+		DZA65_RS05185	0.30	-1.8
1,065,801	+		DZA65_RS05185	0.30	-0.5
1,065,801	+		DZA65_RS05185	0.30	-0.4
1,065,801	+		DZA65_RS05185	0.30	+0.5
1,065,801	+		DZA65_RS05185	0.30	+1.1
1,065,802	-		DZA65_RS05185	0.31	+1.3
1,065,802	-		DZA65_RS05185	0.31	+0.2
1,065,825	+		DZA65_RS05185	0.43	+0.8
1,065,825	+		DZA65_RS05185	0.43	+1.3
1,065,825	+		DZA65_RS05185	0.43	-0.3
1,065,825	+		DZA65_RS05185	0.43	+0.2
1,065,826	-		DZA65_RS05185	0.44	-0.2
1,065,905	-		DZA65_RS05185	0.87	+0.8
1,065,905	-		DZA65_RS05185	0.87	-2.0
1,065,905	-		DZA65_RS05185	0.87	-0.2
1,065,912	+				-0.4
1,065,912	+				+0.4
1,065,912	+				+0.1
1,065,912	+				+1.2
1,065,912	+				+0.8
1,065,912	+				-0.4
1,065,913	-				-1.2
1,065,913	-				+0.0
1,065,913	-				+3.6
1,065,913	-				+0.6
1,065,913	-				-1.2
1,065,919	-				-0.6
1,065,928	+				-1.2
1,065,928	+				-0.2
1,065,964	+				-1.2
1,065,964	+				-0.1
1,065,965	-				+0.6
1,065,984	-				-0.2
1,066,004	+				-0.1
1,066,086	+		DZA65_RS05190	0.14	-0.4
1,066,086	+		DZA65_RS05190	0.14	+2.1
1,066,087	-				+0.8
1,066,131	+		DZA65_RS05190	0.19	+0.0
1,066,131	+		DZA65_RS05190	0.19	-0.2
1,066,131	+		DZA65_RS05190	0.19	+0.5
1,066,151	+		DZA65_RS05190	0.20	-1.7
1,066,205	+		DZA65_RS05190	0.25	+0.2
1,066,205	+		DZA65_RS05190	0.25	+0.4
1,066,226	+		DZA65_RS05190	0.27	+1.5
1,066,226	+		DZA65_RS05190	0.27	+0.5
1,066,226	+		DZA65_RS05190	0.27	+0.8
1,066,227	-		DZA65_RS05190	0.28	-0.4
1,066,227	-		DZA65_RS05190	0.28	+1.8
1,066,227	-		DZA65_RS05190	0.28	+1.2
1,066,227	-		DZA65_RS05190	0.28	-1.0
1,066,229	+		DZA65_RS05190	0.28	-0.3
1,066,229	+		DZA65_RS05190	0.28	+0.2
1,066,229	+		DZA65_RS05190	0.28	+0.4
1,066,230	-		DZA65_RS05190	0.28	+1.6
1,066,247	+		DZA65_RS05190	0.29	+0.3
1,066,247	+		DZA65_RS05190	0.29	+1.3
1,066,247	+		DZA65_RS05190	0.29	-0.1
1,066,248	-		DZA65_RS05190	0.30	-0.8
1,066,248	-		DZA65_RS05190	0.30	-1.2
1,066,248	-		DZA65_RS05190	0.30	-0.3
1,066,248	-		DZA65_RS05190	0.30	-0.8
1,066,248	-		DZA65_RS05190	0.30	-0.2
1,066,248	-		DZA65_RS05190	0.30	+0.1
1,066,255	+		DZA65_RS05190	0.30	-0.0
1,066,274	-		DZA65_RS05190	0.32	+0.3
1,066,311	+		DZA65_RS05190	0.35	+0.4
1,066,311	+		DZA65_RS05190	0.35	+0.6
1,066,312	-		DZA65_RS05190	0.35	-0.5
1,066,312	-		DZA65_RS05190	0.35	-0.3
1,066,312	-		DZA65_RS05190	0.35	-1.2
1,066,312	-		DZA65_RS05190	0.35	+0.4
1,066,312	-		DZA65_RS05190	0.35	+0.4
1,066,350	+		DZA65_RS05190	0.39	+0.0
1,066,350	+		DZA65_RS05190	0.39	-0.1
1,066,350	+		DZA65_RS05190	0.39	-2.7
1,066,351	-		DZA65_RS05190	0.39	+1.2
1,066,351	-		DZA65_RS05190	0.39	-1.4
1,066,351	-		DZA65_RS05190	0.39	-0.0
1,066,351	-		DZA65_RS05190	0.39	-1.3
1,066,351	-		DZA65_RS05190	0.39	-0.5
1,066,351	-		DZA65_RS05190	0.39	-1.0
1,066,351	-		DZA65_RS05190	0.39	-0.1
1,066,388	+		DZA65_RS05190	0.43	+0.8
1,066,388	+		DZA65_RS05190	0.43	-1.0
1,066,388	+		DZA65_RS05190	0.43	-0.0
1,066,389	-		DZA65_RS05190	0.43	-2.9
1,066,389	-		DZA65_RS05190	0.43	-1.2
1,066,389	-		DZA65_RS05190	0.43	-0.8
1,066,389	-		DZA65_RS05190	0.43	-0.5
1,066,427	+		DZA65_RS05190	0.46	+1.4
1,066,431	-		DZA65_RS05190	0.47	+0.8
1,066,485	+		DZA65_RS05190	0.52	-0.4
1,066,485	+		DZA65_RS05190	0.52	-1.2
1,066,486	-		DZA65_RS05190	0.52	-0.2
1,066,486	-		DZA65_RS05190	0.52	+0.5
1,066,514	+		DZA65_RS05190	0.54	-3.0
1,066,514	+		DZA65_RS05190	0.54	+0.2
1,066,514	+		DZA65_RS05190	0.54	+0.6
1,066,515	-		DZA65_RS05190	0.54	+1.5
1,066,548	-		DZA65_RS05190	0.58	+1.1
1,066,582	+		DZA65_RS05190	0.61	-1.2
1,066,583	-		DZA65_RS05190	0.61	+0.4
1,066,583	-		DZA65_RS05190	0.61	-0.1
1,066,583	-		DZA65_RS05190	0.61	+0.3
1,066,594	+		DZA65_RS05190	0.62	+0.7
1,066,597	+		DZA65_RS05190	0.62	-0.3
1,066,597	+		DZA65_RS05190	0.62	-2.2
1,066,598	-		DZA65_RS05190	0.62	+1.2
1,066,688	+		DZA65_RS05190	0.71	+0.2
1,066,688	+		DZA65_RS05190	0.71	+0.3
1,066,688	+		DZA65_RS05190	0.71	+0.9
1,066,688	+		DZA65_RS05190	0.71	-1.5
1,066,688	+		DZA65_RS05190	0.71	+0.0
1,066,689	-		DZA65_RS05190	0.71	-0.2
1,066,689	-		DZA65_RS05190	0.71	-1.2
1,066,728	+		DZA65_RS05190	0.74	-0.5
1,066,728	+				-0.2
1,066,728	+		DZA65_RS05190	0.74	-0.0
1,066,729	-		DZA65_RS05190	0.74	-1.7
1,066,764	+		DZA65_RS05190	0.78	-0.2
1,066,764	+		DZA65_RS05190	0.78	+0.8
1,066,764	+		DZA65_RS05190	0.78	-0.6
1,066,764	+		DZA65_RS05190	0.78	-0.5
1,066,764	+		DZA65_RS05190	0.78	+0.5
1,066,764	+		DZA65_RS05190	0.78	-0.4
1,066,765	-		DZA65_RS05190	0.78	-0.8
1,066,765	-		DZA65_RS05190	0.78	-0.2
1,066,765	-		DZA65_RS05190	0.78	-0.5
1,066,765	-		DZA65_RS05190	0.78	+0.4
1,066,769	+		DZA65_RS05190	0.78	-1.8
1,066,769	+		DZA65_RS05190	0.78	-0.7
1,066,770	-		DZA65_RS05190	0.78	+2.1
1,066,770	-		DZA65_RS05190	0.78	+0.8
1,066,770	-		DZA65_RS05190	0.78	-0.5
1,066,770	-		DZA65_RS05190	0.78	+0.8
1,066,850	+		DZA65_RS05190	0.86	+0.8
1,066,850	+		DZA65_RS05190	0.86	+0.2
1,066,850	+		DZA65_RS05190	0.86	+0.6
1,066,851	-		DZA65_RS05190	0.86	+0.3
1,066,851	-		DZA65_RS05190	0.86	+0.6
1,066,851	-		DZA65_RS05190	0.86	-0.2
1,066,851	-		DZA65_RS05190	0.86	+1.2
1,066,851	-		DZA65_RS05190	0.86	+0.4
1,066,928	-				-0.8
1,066,928	-				-0.2
1,066,928	-				-1.2