Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05145

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,060,976	+				+0.4
1,060,977	-				-0.2
1,060,991	+				-1.7
1,060,992	-				+0.2
1,060,995	+				-0.2
1,060,995	+				-0.1
1,060,995	+				-1.7
1,060,995	+				+0.7
1,060,995	+				+0.7
1,060,996	-				+0.9
1,060,996	-				-0.3
1,060,996	-				-2.2
1,061,001	-				-0.2
1,061,020	+				+0.8
1,061,020	+				+0.5
1,061,020	+				-0.5
1,061,021	-				-0.0
1,061,021	-				+0.8
1,061,021	-				-0.4
1,061,079	+		DZA65_RS05140	0.11	+0.4
1,061,079	+		DZA65_RS05140	0.11	-0.0
1,061,079	+		DZA65_RS05140	0.11	+0.5
1,061,079	+		DZA65_RS05140	0.11	-1.8
1,061,079	+		DZA65_RS05140	0.11	+0.1
1,061,080	-		DZA65_RS05140	0.11	+0.2
1,061,080	-		DZA65_RS05140	0.11	-0.5
1,061,080	-		DZA65_RS05140	0.11	-0.2
1,061,080	-		DZA65_RS05140	0.11	+0.5
1,061,080	-		DZA65_RS05140	0.11	-2.4
1,061,085	-		DZA65_RS05140	0.12	+1.4
1,061,186	+		DZA65_RS05140	0.23	+1.0
1,061,186	+		DZA65_RS05140	0.23	+0.4
1,061,186	+		DZA65_RS05140	0.23	+0.8
1,061,187	-		DZA65_RS05140	0.23	+2.2
1,061,250	+		DZA65_RS05140	0.30	-0.7
1,061,250	+		DZA65_RS05140	0.30	-2.0
1,061,250	+		DZA65_RS05140	0.30	+0.6
1,061,250	+		DZA65_RS05140	0.30	+1.5
1,061,250	+		DZA65_RS05140	0.30	-1.2
1,061,251	-		DZA65_RS05140	0.30	+0.3
1,061,251	-		DZA65_RS05140	0.30	-1.1
1,061,265	+		DZA65_RS05140	0.31	+0.3
1,061,265	+		DZA65_RS05140	0.31	-1.0
1,061,265	+		DZA65_RS05140	0.31	-1.3
1,061,265	+		DZA65_RS05140	0.31	-1.5
1,061,265	+		DZA65_RS05140	0.31	+1.8
1,061,265	+		DZA65_RS05140	0.31	-1.5
1,061,266	-		DZA65_RS05140	0.31	+1.1
1,061,266	-		DZA65_RS05140	0.31	+0.0
1,061,266	-		DZA65_RS05140	0.31	-0.6
1,061,266	-		DZA65_RS05140	0.31	-1.1
1,061,266	-		DZA65_RS05140	0.31	-0.2
1,061,266	-		DZA65_RS05140	0.31	+1.0
1,061,266	-		DZA65_RS05140	0.31	-1.2
1,061,266	-		DZA65_RS05140	0.31	-1.8
1,061,266	-		DZA65_RS05140	0.31	-0.4
1,061,266	-		DZA65_RS05140	0.31	-2.2
1,061,266	-		DZA65_RS05140	0.31	+1.4
1,061,266	-		DZA65_RS05140	0.31	+0.8
1,061,266	-		DZA65_RS05140	0.31	+0.7
1,061,267	+		DZA65_RS05140	0.31	+1.9
1,061,267	+		DZA65_RS05140	0.31	-0.3
1,061,267	+		DZA65_RS05140	0.31	-1.2
1,061,267	+		DZA65_RS05140	0.31	+0.4
1,061,267	+		DZA65_RS05140	0.31	+0.8
1,061,267	+		DZA65_RS05140	0.31	+0.8
1,061,268	-		DZA65_RS05140	0.32	+1.5
1,061,268	-		DZA65_RS05140	0.32	-0.1
1,061,329	+		DZA65_RS05140	0.38	-0.7
1,061,329	+		DZA65_RS05140	0.38	+0.8
1,061,330	-		DZA65_RS05140	0.38	+0.3
1,061,330	-		DZA65_RS05140	0.38	-0.2
1,061,330	-		DZA65_RS05140	0.38	-0.4
1,061,330	-		DZA65_RS05140	0.38	+0.1
1,061,330	-		DZA65_RS05140	0.38	-0.4
1,061,330	-		DZA65_RS05140	0.38	-0.8
1,061,442	-		DZA65_RS05140	0.50	+0.0
1,061,487	+		DZA65_RS05140	0.55	-0.1
1,061,488	-		DZA65_RS05140	0.55	-1.0
1,061,537	+		DZA65_RS05140	0.61	-1.3
1,061,605	+		DZA65_RS05140	0.68	-0.2
1,061,605	+		DZA65_RS05140	0.68	+0.3
1,061,605	+		DZA65_RS05140	0.68	+0.5
1,061,605	+		DZA65_RS05140	0.68	+0.3
1,061,605	+		DZA65_RS05140	0.68	+0.3
1,061,605	+		DZA65_RS05140	0.68	-0.9
1,061,605	+		DZA65_RS05140	0.68	-0.4
1,061,605	+		DZA65_RS05140	0.68	+1.1
1,061,605	+		DZA65_RS05140	0.68	-0.3
1,061,606	-		DZA65_RS05140	0.68	+2.0
1,061,606	-		DZA65_RS05140	0.68	-2.4
1,061,606	-		DZA65_RS05140	0.68	+0.3
1,061,609	+		DZA65_RS05140	0.69	-2.2
1,061,609	+		DZA65_RS05140	0.69	-1.0
1,061,609	+		DZA65_RS05140	0.69	-0.2
1,061,609	+		DZA65_RS05140	0.69	+1.1
1,061,609	+		DZA65_RS05140	0.69	-0.2
1,061,609	+		DZA65_RS05140	0.69	-0.1
1,061,609	+		DZA65_RS05140	0.69	-1.4
1,061,609	+		DZA65_RS05140	0.69	-1.5
1,061,609	+		DZA65_RS05140	0.69	-1.2
1,061,609	+		DZA65_RS05140	0.69	-0.8
1,061,609	+		DZA65_RS05140	0.69	-2.2
1,061,609	+		DZA65_RS05140	0.69	+1.5
1,061,609	+		DZA65_RS05140	0.69	+0.6
1,061,609	+		DZA65_RS05140	0.69	+0.4
1,061,609	+		DZA65_RS05140	0.69	-0.2
1,061,609	+		DZA65_RS05140	0.69	-1.2
1,061,610	-		DZA65_RS05140	0.69	-1.2
1,061,610	-		DZA65_RS05140	0.69	-0.2
1,061,610	-		DZA65_RS05140	0.69	+1.0
1,061,610	-		DZA65_RS05140	0.69	-0.0
1,061,610	-		DZA65_RS05140	0.69	+0.8
1,061,610	-		DZA65_RS05140	0.69	-2.2
1,061,610	-		DZA65_RS05140	0.69	+0.2
1,061,610	-		DZA65_RS05140	0.69	-0.8
1,061,610	-		DZA65_RS05140	0.69	+0.7
1,061,610	-		DZA65_RS05140	0.69	+0.1
1,061,610	-		DZA65_RS05140	0.69	-0.2
1,061,610	-		DZA65_RS05140	0.69	-0.4
1,061,610	-		DZA65_RS05140	0.69	-0.8
1,061,610	-		DZA65_RS05140	0.69	+0.9
1,061,610	-		DZA65_RS05140	0.69	-1.8
1,061,610	-		DZA65_RS05140	0.69	-0.2
1,061,610	-		DZA65_RS05140	0.69	-1.0
1,061,611	+		DZA65_RS05140	0.69	+0.6
1,061,611	+		DZA65_RS05140	0.69	-1.8
1,061,611	+		DZA65_RS05140	0.69	-0.6
1,061,611	+		DZA65_RS05140	0.69	-0.4
1,061,611	+		DZA65_RS05140	0.69	+0.0
1,061,611	+		DZA65_RS05140	0.69	-0.5
1,061,611	+		DZA65_RS05140	0.69	+0.0
1,061,611	+		DZA65_RS05140	0.69	+0.0
1,061,611	+		DZA65_RS05140	0.69	-0.4
1,061,611	+		DZA65_RS05140	0.69	-0.2
1,061,611	+		DZA65_RS05140	0.69	+0.5
1,061,611	+		DZA65_RS05140	0.69	-1.3
1,061,611	+		DZA65_RS05140	0.69	+0.0
1,061,611	+		DZA65_RS05140	0.69	+0.2
1,061,611	+		DZA65_RS05140	0.69	-0.1
1,061,611	+		DZA65_RS05140	0.69	+0.0
1,061,612	-		DZA65_RS05140	0.69	+0.3
1,061,612	-		DZA65_RS05140	0.69	+0.5
1,061,612	-		DZA65_RS05140	0.69	-0.6
1,061,612	-		DZA65_RS05140	0.69	+0.2
1,061,612	-		DZA65_RS05140	0.69	-1.2
1,061,612	-		DZA65_RS05140	0.69	-0.4
1,061,612	-		DZA65_RS05140	0.69	+1.0
1,061,612	-		DZA65_RS05140	0.69	-0.0
1,061,631	+		DZA65_RS05140	0.71	-0.5
1,061,631	+		DZA65_RS05140	0.71	-0.4
1,061,632	-		DZA65_RS05140	0.71	-0.8
1,061,643	+		DZA65_RS05140	0.72	+0.2
1,061,643	+		DZA65_RS05140	0.72	-0.2
1,061,643	+				-1.8
1,061,643	+		DZA65_RS05140	0.72	-0.0
1,061,644	-		DZA65_RS05140	0.72	-0.8
1,061,644	-		DZA65_RS05140	0.72	+0.0
1,061,644	-		DZA65_RS05140	0.72	-1.0
1,061,645	+		DZA65_RS05140	0.73	+0.1
1,061,646	-		DZA65_RS05140	0.73	-1.1
1,061,646	-		DZA65_RS05140	0.73	+0.6
1,061,651	+		DZA65_RS05140	0.73	+0.1
1,061,651	+		DZA65_RS05140	0.73	-0.1
1,061,652	-		DZA65_RS05140	0.73	-1.0
1,061,652	-		DZA65_RS05140	0.73	-0.4
1,061,652	-		DZA65_RS05140	0.73	-2.4
1,061,666	+		DZA65_RS05140	0.75	-1.0
1,061,666	+		DZA65_RS05140	0.75	-1.0
1,061,666	+		DZA65_RS05140	0.75	-0.0
1,061,672	+		DZA65_RS05140	0.75	+0.7
1,061,686	+		DZA65_RS05140	0.77	-1.5
1,061,686	+		DZA65_RS05140	0.77	-1.4
1,061,698	+		DZA65_RS05140	0.78	+0.4
1,061,699	-		DZA65_RS05140	0.78	-0.1
1,061,699	-		DZA65_RS05140	0.78	-1.8
1,061,699	-		DZA65_RS05140	0.78	-0.5
1,061,703	+		DZA65_RS05140	0.79	-0.6
1,061,703	+		DZA65_RS05140	0.79	-1.2
1,061,708	+		DZA65_RS05140	0.79	-0.2
1,061,762	+		DZA65_RS05140	0.85	+0.2
1,061,762	+		DZA65_RS05140	0.85	+1.4
1,061,768	-		DZA65_RS05140	0.86	+0.2
1,061,768	-		DZA65_RS05140	0.86	+2.9
1,061,775	+		DZA65_RS05140	0.87	-2.7
1,061,906	+				-0.1
1,061,906	+				-0.6
1,061,906	+				+0.0
1,061,906	+				-0.0
1,061,907	-				-0.2
1,061,907	-				-0.0
1,061,907	-				+0.0
1,061,907	-				+0.8
1,061,907	-				+0.6
1,061,914	+				+0.5
1,061,915	-				-0.4
1,061,956	+		DZA65_RS05145	0.12	+1.5
1,061,956	+		DZA65_RS05145	0.12	-0.8
1,061,956	+		DZA65_RS05145	0.12	-0.7
1,061,957	-		DZA65_RS05145	0.12	+0.3
1,061,957	-		DZA65_RS05145	0.12	-2.0
1,061,957	-		DZA65_RS05145	0.12	+0.8
1,061,970	+		DZA65_RS05145	0.18	-1.0
1,061,970	+		DZA65_RS05145	0.18	-0.8
1,061,977	+		DZA65_RS05145	0.21	+0.6
1,061,977	+		DZA65_RS05145	0.21	+0.6
1,061,982	+		DZA65_RS05145	0.23	+1.6
1,061,982	+		DZA65_RS05145	0.23	-0.5
1,061,982	+		DZA65_RS05145	0.23	+2.7
1,061,982	+		DZA65_RS05145	0.23	+1.2
1,061,982	+		DZA65_RS05145	0.23	+0.1
1,061,983	-		DZA65_RS05145	0.23	-1.1
1,061,983	-		DZA65_RS05145	0.23	-0.5
1,061,983	-		DZA65_RS05145	0.23	+0.8
1,061,983	-		DZA65_RS05145	0.23	-1.0
1,062,095	+		DZA65_RS05145	0.72	+0.0
1,062,117	+		DZA65_RS05145	0.81	-0.4
1,062,121	-		DZA65_RS05145	0.83	+1.4
1,062,185	-				+0.2
1,062,247	+				+0.2
1,062,248	-				-0.6
1,062,248	-				+0.8
1,062,248	-				-2.5
1,062,310	+		DZA65_RS05150	0.30	-0.6
1,062,322	+		DZA65_RS05150	0.35	+0.0
1,062,323	-		DZA65_RS05150	0.35	+0.2
1,062,323	-		DZA65_RS05150	0.35	+0.8
1,062,340	+		DZA65_RS05150	0.41	+0.6
1,062,340	+		DZA65_RS05150	0.41	-3.1
1,062,340	+		DZA65_RS05150	0.41	-0.7
1,062,340	+		DZA65_RS05150	0.41	+0.6
1,062,340	+		DZA65_RS05150	0.41	+0.2
1,062,341	-		DZA65_RS05150	0.42	-0.2
1,062,341	-		DZA65_RS05150	0.42	-0.1
1,062,341	-		DZA65_RS05150	0.42	+1.9
1,062,341	-		DZA65_RS05150	0.42	-1.1
1,062,341	-		DZA65_RS05150	0.42	-1.0
1,062,341	-		DZA65_RS05150	0.42	+0.3
1,062,341	-		DZA65_RS05150	0.42	+0.0
1,062,341	-		DZA65_RS05150	0.42	+0.0
1,062,344	+		DZA65_RS05150	0.43	-2.0
1,062,386	+		DZA65_RS05150	0.59	-0.2
1,062,387	-		DZA65_RS05150	0.59	-0.0
1,062,387	-		DZA65_RS05150	0.59	+0.6
1,062,387	-		DZA65_RS05150	0.59	-0.3
1,062,387	-		DZA65_RS05150	0.59	-0.3
1,062,387	-		DZA65_RS05150	0.59	-1.2
1,062,394	+		DZA65_RS05150	0.61	-0.1
1,062,394	+		DZA65_RS05150	0.61	+0.8
1,062,395	-		DZA65_RS05150	0.62	+0.6
1,062,412	+		DZA65_RS05150	0.68	+0.3
1,062,440	-		DZA65_RS05150	0.79	+1.0
1,062,497	+				-0.8
1,062,498	-				-0.2
1,062,498	-				-0.2
1,062,498	-				-0.4
1,062,516	-				+0.4
1,062,516	-				+0.9
1,062,520	-				+1.1
1,062,520	-				+1.0
1,062,532	+				+0.6
1,062,574	+				-0.6
1,062,574	+				+0.8
1,062,575	-				-0.2
1,062,575	-				-1.2
1,062,579	+				-1.8
1,062,579	+				+1.0
1,062,579	+				+1.1
1,062,579	+				-0.8
1,062,580	-				+0.6
1,062,580	-				-1.5
1,062,580	-				-0.5
1,062,580	-				-0.1
1,062,580	-				+0.4
1,062,593	+				-1.3
1,062,633	-				-2.0
1,062,647	+				-0.8
1,062,647	+				-0.4
1,062,647	+				-0.8
1,062,663	+				-0.4
1,062,663	+				+0.6
1,062,663	+				+0.4
1,062,663	+				-1.2
1,062,664	-				-0.1
1,062,664	-				-0.8
1,062,664	-				-0.5
1,062,714	+				+0.6
1,062,715	-				-0.5
1,062,715	-				-1.0
1,062,715	-				+0.2
1,062,720	+				+1.6
1,062,721	-				-0.5
1,062,721	-				+0.2
1,062,751	+				-0.2
1,062,756	+				+1.0
1,062,757	-				+0.8
1,062,757	-				+0.6
1,062,762	+				+1.0
1,062,768	-				+3.0
1,062,818	+				-0.2
1,062,818	+				-0.4
1,062,833	-				+0.3
1,062,833	-				+0.4
1,062,876	+				-0.9
1,062,876	+				-0.8
1,062,876	+				-0.2
1,062,877	-				-0.4
1,062,877	-				+0.3
1,062,901	+		DZA65_RS05155	0.10	-0.1
1,062,901	+		DZA65_RS05155	0.10	+1.9
1,062,913	+		DZA65_RS05155	0.12	-0.8
1,062,914	-		DZA65_RS05155	0.12	+0.8
1,062,914	-		DZA65_RS05155	0.12	-1.6
1,062,957	+		DZA65_RS05155	0.18	+0.4
1,062,966	-		DZA65_RS05155	0.19	-0.6
1,062,966	-		DZA65_RS05155	0.19	-0.5
1,062,966	-		DZA65_RS05155	0.19	+1.1
1,062,988	+		DZA65_RS05155	0.23	+1.2
1,062,989	-		DZA65_RS05155	0.23	-1.2
1,062,991	+		DZA65_RS05155	0.23	-0.8
1,062,991	+		DZA65_RS05155	0.23	+0.8
1,062,991	+		DZA65_RS05155	0.23	-0.3
1,062,991	+		DZA65_RS05155	0.23	+1.2
1,062,991	+		DZA65_RS05155	0.23	+0.6
1,062,992	-		DZA65_RS05155	0.23	+0.2
1,062,992	-		DZA65_RS05155	0.23	+0.0
1,062,992	-		DZA65_RS05155	0.23	-0.5
1,062,992	-		DZA65_RS05155	0.23	+0.3
1,063,029	-		DZA65_RS05155	0.29	-0.8
1,063,029	-		DZA65_RS05155	0.29	+0.6
1,063,103	+		DZA65_RS05155	0.39	+0.8
1,063,104	-		DZA65_RS05155	0.39	+1.2
1,063,118	+		DZA65_RS05155	0.41	-1.2
1,063,119	-		DZA65_RS05155	0.42	+3.4
1,063,156	-		DZA65_RS05155	0.47	+0.0