Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05040

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,037,843	-		DZA65_RS05035	0.39	+0.2
1,037,863	+		DZA65_RS05035	0.40	+0.2
1,037,864	-		DZA65_RS05035	0.40	-0.6
1,037,864	-		DZA65_RS05035	0.40	+0.8
1,037,864	-		DZA65_RS05035	0.40	-0.5
1,037,899	+		DZA65_RS05035	0.42	-1.2
1,037,899	+		DZA65_RS05035	0.42	-2.3
1,037,899	+		DZA65_RS05035	0.42	+0.3
1,037,899	+		DZA65_RS05035	0.42	-1.2
1,037,899	+		DZA65_RS05035	0.42	-0.2
1,037,900	-		DZA65_RS05035	0.42	-0.7
1,037,900	-		DZA65_RS05035	0.42	-0.9
1,037,900	-		DZA65_RS05035	0.42	+1.3
1,037,900	-		DZA65_RS05035	0.42	+1.4
1,037,927	-		DZA65_RS05035	0.44	+1.2
1,037,932	+		DZA65_RS05035	0.44	+0.4
1,037,932	+		DZA65_RS05035	0.44	-1.4
1,037,932	+		DZA65_RS05035	0.44	-0.5
1,037,932	+		DZA65_RS05035	0.44	-0.3
1,037,932	+		DZA65_RS05035	0.44	-1.4
1,037,933	-		DZA65_RS05035	0.45	+1.4
1,037,933	-		DZA65_RS05035	0.45	+0.4
1,037,996	-		DZA65_RS05035	0.49	+0.5
1,038,020	+		DZA65_RS05035	0.50	-0.8
1,038,020	+		DZA65_RS05035	0.50	+0.4
1,038,021	-		DZA65_RS05035	0.50	-0.2
1,038,021	-		DZA65_RS05035	0.50	-0.3
1,038,021	-		DZA65_RS05035	0.50	-0.7
1,038,021	-		DZA65_RS05035	0.50	-0.8
1,038,021	-		DZA65_RS05035	0.50	-1.2
1,038,022	+		DZA65_RS05035	0.50	+0.0
1,038,023	-		DZA65_RS05035	0.50	+0.7
1,038,023	-		DZA65_RS05035	0.50	-0.4
1,038,023	-		DZA65_RS05035	0.50	+0.6
1,038,110	-		DZA65_RS05035	0.56	-0.2
1,038,160	+		DZA65_RS05035	0.60	+0.2
1,038,160	+		DZA65_RS05035	0.60	-0.1
1,038,161	-		DZA65_RS05035	0.60	-0.4
1,038,161	-		DZA65_RS05035	0.60	+0.8
1,038,266	-		DZA65_RS05035	0.67	+1.5
1,038,274	+		DZA65_RS05035	0.67	-0.5
1,038,275	-		DZA65_RS05035	0.67	+4.3
1,038,283	+		DZA65_RS05035	0.68	-0.2
1,038,283	+		DZA65_RS05035	0.68	-2.0
1,038,283	+		DZA65_RS05035	0.68	+0.4
1,038,283	+		DZA65_RS05035	0.68	-1.5
1,038,283	+		DZA65_RS05035	0.68	+0.5
1,038,283	+		DZA65_RS05035	0.68	-1.4
1,038,283	+		DZA65_RS05035	0.68	-2.0
1,038,283	+		DZA65_RS05035	0.68	+0.6
1,038,284	-		DZA65_RS05035	0.68	+1.1
1,038,284	-		DZA65_RS05035	0.68	+0.4
1,038,284	-		DZA65_RS05035	0.68	+2.0
1,038,284	-		DZA65_RS05035	0.68	-0.1
1,038,284	-		DZA65_RS05035	0.68	-1.8
1,038,288	+		DZA65_RS05035	0.68	-0.2
1,038,305	-		DZA65_RS05035	0.69	+0.3
1,038,332	-		DZA65_RS05035	0.71	+0.8
1,038,388	+		DZA65_RS05035	0.75	+0.0
1,038,427	+		DZA65_RS05035	0.77	-0.7
1,038,427	+		DZA65_RS05035	0.77	-0.8
1,038,427	+		DZA65_RS05035	0.77	-0.1
1,038,427	+		DZA65_RS05035	0.77	-0.2
1,038,428	-		DZA65_RS05035	0.77	-1.1
1,038,428	-		DZA65_RS05035	0.77	-0.7
1,038,428	-		DZA65_RS05035	0.77	+1.2
1,038,428	-		DZA65_RS05035	0.77	+0.5
1,038,428	-		DZA65_RS05035	0.77	-1.5
1,038,428	-		DZA65_RS05035	0.77	-1.5
1,038,431	+		DZA65_RS05035	0.77	+0.3
1,038,431	+		DZA65_RS05035	0.77	-0.2
1,038,431	+		DZA65_RS05035	0.77	+1.0
1,038,431	+		DZA65_RS05035	0.77	-0.5
1,038,431	+		DZA65_RS05035	0.77	+1.0
1,038,431	+		DZA65_RS05035	0.77	-0.4
1,038,431	+		DZA65_RS05035	0.77	-0.8
1,038,431	+		DZA65_RS05035	0.77	-1.1
1,038,431	+		DZA65_RS05035	0.77	-1.5
1,038,432	-		DZA65_RS05035	0.77	-1.6
1,038,432	-		DZA65_RS05035	0.77	-1.3
1,038,432	-		DZA65_RS05035	0.77	-0.3
1,038,432	-		DZA65_RS05035	0.77	+2.0
1,038,432	-		DZA65_RS05035	0.77	-1.4
1,038,432	-		DZA65_RS05035	0.77	+1.2
1,038,432	-		DZA65_RS05035	0.77	+0.3
1,038,432	-		DZA65_RS05035	0.77	+0.8
1,038,432	-		DZA65_RS05035	0.77	-2.7
1,038,432	-		DZA65_RS05035	0.77	-1.2
1,038,432	-		DZA65_RS05035	0.77	-1.2
1,038,432	-		DZA65_RS05035	0.77	+1.0
1,038,432	-		DZA65_RS05035	0.77	-0.8
1,038,432	-		DZA65_RS05035	0.77	+0.1
1,038,499	+		DZA65_RS05035	0.82	+0.2
1,038,499	+		DZA65_RS05035	0.82	-1.1
1,038,500	-		DZA65_RS05035	0.82	+0.6
1,038,500	-		DZA65_RS05035	0.82	+0.6
1,038,518	+		DZA65_RS05035	0.83	+0.3
1,038,518	+		DZA65_RS05035	0.83	-2.2
1,038,518	+		DZA65_RS05035	0.83	-1.3
1,038,519	-		DZA65_RS05035	0.83	+0.2
1,038,589	+		DZA65_RS05035	0.88	-0.2
1,038,589	+		DZA65_RS05035	0.88	+0.2
1,038,589	+		DZA65_RS05035	0.88	-0.1
1,038,589	+		DZA65_RS05035	0.88	+1.5
1,038,589	+		DZA65_RS05035	0.88	+0.8
1,038,590	-		DZA65_RS05035	0.88	+2.2
1,038,590	-		DZA65_RS05035	0.88	+0.1
1,038,590	-		DZA65_RS05035	0.88	-0.2
1,038,590	-		DZA65_RS05035	0.88	-0.4
1,038,590	-		DZA65_RS05035	0.88	+1.4
1,038,624	-				+0.4
1,038,624	-				+1.0
1,038,647	+				+1.6
1,038,647	+				-1.5
1,038,647	+				-2.2
1,038,647	+				-0.6
1,038,647	+				+0.6
1,038,647	+				-0.4
1,038,647	+				-1.4
1,038,647	+				+0.5
1,038,647	+				-2.0
1,038,647	+				-1.8
1,038,647	+				-1.2
1,038,648	-				-1.5
1,038,675	+				-0.8
1,038,675	+				-0.2
1,038,675	+				-0.6
1,038,676	-				-0.4
1,038,676	-				+0.9
1,038,679	+				+1.6
1,038,679	+				+1.3
1,038,679	+				-1.2
1,038,679	+				+1.3
1,038,679	+				-0.7
1,038,679	+				+0.3
1,038,679	+				-0.1
1,038,679	+				-0.5
1,038,679	+				-1.8
1,038,679	+				+0.4
1,038,679	+				-1.0
1,038,679	+				-0.5
1,038,679	+				-1.1
1,038,679	+				-2.0
1,038,679	+				-1.1
1,038,679	+				-0.8
1,038,679	+				+0.4
1,038,680	-				-1.0
1,038,680	-				-1.5
1,038,680	-				-1.2
1,038,680	-				-1.4
1,038,680	-				+0.9
1,038,680	-				-0.6
1,038,680	-				-1.5
1,038,680	-				+0.2
1,038,680	-				+2.8
1,038,680	-				-0.2
1,038,680	-				-1.2
1,038,680	-				+0.8
1,038,680	-				+1.5
1,038,680	-				-0.8
1,038,680	-				-1.8
1,038,680	-				+0.6
1,038,705	-				-0.1
1,038,731	+				+1.5
1,038,731	+				+0.9
1,038,732	-				+0.9
1,038,732	-				-0.2
1,038,732	-				-0.6
1,038,748	+				+0.4
1,038,749	-				+0.8
1,038,782	+				+0.4
1,038,782	+				+0.2
1,038,801	+				+1.0
1,038,801	+				+2.7
1,038,801	+				-0.2
1,038,801	+				-0.2
1,038,801	+				+0.8
1,038,801	+				+0.8
1,038,801	+				-1.7
1,038,801	+				+0.6
1,038,801	+				+1.6
1,038,802	-				-0.1
1,038,802	-				-1.4
1,038,806	+				-0.2
1,038,809	+				-0.1
1,038,810	-				+0.3
1,038,810	-				+0.4
1,038,810	-				-2.2
1,038,812	+				-1.1
1,038,812	+				-1.2
1,038,813	-				-0.8
1,038,813	-				-0.4
1,038,813	-				-1.2
1,038,813	-				+0.2
1,038,813	-				-0.2
1,038,813	-				+1.5
1,038,882	+		DZA65_RS05040	0.24	+1.9
1,038,882	+		DZA65_RS05040	0.24	-1.0
1,038,882	+		DZA65_RS05040	0.24	-0.1
1,038,882	+		DZA65_RS05040	0.24	+2.8
1,038,882	+		DZA65_RS05040	0.24	-1.0
1,038,882	+		DZA65_RS05040	0.24	-1.5
1,038,882	+		DZA65_RS05040	0.24	+0.0
1,038,883	-		DZA65_RS05040	0.24	-0.6
1,038,883	-		DZA65_RS05040	0.24	-0.2
1,038,883	-		DZA65_RS05040	0.24	-0.8
1,038,883	-		DZA65_RS05040	0.24	+0.7
1,038,883	-		DZA65_RS05040	0.24	-1.8
1,038,883	-		DZA65_RS05040	0.24	+0.9
1,038,883	-		DZA65_RS05040	0.24	-0.1
1,038,883	-		DZA65_RS05040	0.24	-0.1
1,038,901	-		DZA65_RS05040	0.28	-0.2
1,039,012	+		DZA65_RS05040	0.55	-0.6
1,039,012	+		DZA65_RS05040	0.55	+0.8
1,039,013	-		DZA65_RS05040	0.55	-0.8
1,039,013	-		DZA65_RS05040	0.55	-0.7
1,039,013	-		DZA65_RS05040	0.55	+1.4
1,039,013	-		DZA65_RS05040	0.55	+0.5
1,039,013	-		DZA65_RS05040	0.55	+0.2
1,039,013	-		DZA65_RS05040	0.55	+1.3
1,039,013	-		DZA65_RS05040	0.55	+0.2
1,039,013	-		DZA65_RS05040	0.55	-0.5
1,039,013	-		DZA65_RS05040	0.55	-0.2
1,039,081	+		DZA65_RS05040	0.72	-2.0
1,039,081	+		DZA65_RS05040	0.72	-0.2
1,039,081	+		DZA65_RS05040	0.72	+0.8
1,039,081	+		DZA65_RS05040	0.72	+0.6
1,039,081	+		DZA65_RS05040	0.72	-1.7
1,039,081	+		DZA65_RS05040	0.72	-2.2
1,039,081	+		DZA65_RS05040	0.72	-1.4
1,039,081	+		DZA65_RS05040	0.72	+0.0
1,039,082	-				-0.8
1,039,082	-		DZA65_RS05040	0.72	-2.0
1,039,082	-		DZA65_RS05040	0.72	-2.0
1,039,082	-		DZA65_RS05040	0.72	-0.0
1,039,082	-		DZA65_RS05040	0.72	-0.7
1,039,082	-		DZA65_RS05040	0.72	+0.6
1,039,082	-		DZA65_RS05040	0.72	-0.0
1,039,082	-		DZA65_RS05040	0.72	-0.5
1,039,082	-		DZA65_RS05040	0.72	+0.2
1,039,082	-		DZA65_RS05040	0.72	+0.0
1,039,082	-		DZA65_RS05040	0.72	+0.3
1,039,082	-		DZA65_RS05040	0.72	-1.2
1,039,082	-		DZA65_RS05040	0.72	+0.4
1,039,082	-		DZA65_RS05040	0.72	-0.2
1,039,126	+		DZA65_RS05040	0.83	-1.0
1,039,126	+		DZA65_RS05040	0.83	+0.6
1,039,131	+		DZA65_RS05040	0.84	-0.8
1,039,131	+		DZA65_RS05040	0.84	-1.2
1,039,131	+		DZA65_RS05040	0.84	+0.4
1,039,131	+		DZA65_RS05040	0.84	+0.1
1,039,132	-		DZA65_RS05040	0.84	+0.0
1,039,132	-		DZA65_RS05040	0.84	-0.0
1,039,147	+		DZA65_RS05040	0.88	-0.2
1,039,148	-		DZA65_RS05040	0.88	+0.7
1,039,148	-		DZA65_RS05040	0.88	-0.3
1,039,162	+				+1.0
1,039,163	-				+0.5
1,039,163	-				+1.4
1,039,163	-				+0.8
1,039,195	+				+0.8
1,039,195	+				+0.3
1,039,195	+				+2.0
1,039,195	+				-1.2
1,039,196	-				-0.4
1,039,196	-				-0.2
1,039,207	+				+0.3
1,039,207	+				+1.0
1,039,208	-				-1.2
1,039,217	+				-1.7
1,039,217	+				+0.2
1,039,217	+				+0.4
1,039,217	+				+1.2
1,039,240	-				+0.5
1,039,286	-				-2.8
1,039,286	-				-1.3
1,039,298	+				-1.0
1,039,328	-				+0.2
1,039,329	+				+1.9
1,039,329	+				+0.3
1,039,330	-				-0.4
1,039,330	-				-0.2
1,039,330	-				-1.8
1,039,330	-				-0.7
1,039,365	+				+0.8
1,039,365	+				+0.2
1,039,366	-				-0.4
1,039,366	-				-0.4
1,039,374	+				-1.0
1,039,374	+				+0.2
1,039,374	+				+0.9
1,039,374	+				-0.8
1,039,375	-				-2.2
1,039,429	+				-0.6
1,039,429	+				+1.0
1,039,429	+				+0.5
1,039,430	-				-2.0
1,039,430	-				-0.2
1,039,430	-				-2.5
1,039,431	+				-0.6
1,039,431	+				-2.0
1,039,432	-				+1.2
1,039,432	-				-0.2
1,039,432	-				+0.2
1,039,432	-				-1.0
1,039,498	+		DZA65_RS05045	0.11	-0.9
1,039,498	+		DZA65_RS05045	0.11	+0.9
1,039,499	-		DZA65_RS05045	0.11	+0.8
1,039,560	+		DZA65_RS05045	0.13	-0.2
1,039,582	+		DZA65_RS05045	0.14	-0.3
1,039,582	+		DZA65_RS05045	0.14	+0.5
1,039,582	+		DZA65_RS05045	0.14	+0.2
1,039,583	-		DZA65_RS05045	0.14	-1.2
1,039,583	-		DZA65_RS05045	0.14	-1.0
1,039,583	-		DZA65_RS05045	0.14	-2.0
1,039,583	-		DZA65_RS05045	0.14	+1.0
1,039,583	-		DZA65_RS05045	0.14	+0.4
1,039,583	-		DZA65_RS05045	0.14	-0.8
1,039,590	+		DZA65_RS05045	0.14	+0.0
1,039,590	+		DZA65_RS05045	0.14	-1.0
1,039,590	+		DZA65_RS05045	0.14	-2.9
1,039,590	+		DZA65_RS05045	0.14	-2.9
1,039,590	+		DZA65_RS05045	0.14	+1.9
1,039,590	+		DZA65_RS05045	0.14	-1.2
1,039,590	+		DZA65_RS05045	0.14	-1.3
1,039,591	-		DZA65_RS05045	0.14	+1.4
1,039,611	+		DZA65_RS05045	0.15	+1.0
1,039,611	+		DZA65_RS05045	0.15	-0.0
1,039,611	+		DZA65_RS05045	0.15	-1.5
1,039,612	-		DZA65_RS05045	0.15	-1.2
1,039,644	-		DZA65_RS05045	0.16	+0.8
1,039,676	+		DZA65_RS05045	0.17	+2.1
1,039,676	+		DZA65_RS05045	0.17	-0.7
1,039,676	+		DZA65_RS05045	0.17	-1.8
1,039,676	+		DZA65_RS05045	0.17	+0.0
1,039,676	+		DZA65_RS05045	0.17	-0.4
1,039,676	+		DZA65_RS05045	0.17	-2.9
1,039,676	+		DZA65_RS05045	0.17	-0.1
1,039,677	-		DZA65_RS05045	0.17	+0.6
1,039,677	-		DZA65_RS05045	0.17	-0.9
1,039,677	-		DZA65_RS05045	0.17	-2.2
1,039,677	-		DZA65_RS05045	0.17	+1.0
1,039,677	-		DZA65_RS05045	0.17	-1.0
1,039,677	-		DZA65_RS05045	0.17	+1.3
1,039,723	+		DZA65_RS05045	0.19	+2.6
1,039,773	+		DZA65_RS05045	0.20	-0.8
1,039,773	+		DZA65_RS05045	0.20	+0.2
1,039,773	+		DZA65_RS05045	0.20	-0.1
1,039,774	-		DZA65_RS05045	0.20	-2.2
1,039,774	-		DZA65_RS05045	0.20	-0.6
1,039,774	-		DZA65_RS05045	0.20	+0.0
1,039,779	+		DZA65_RS05045	0.21	-0.4
1,039,779	+		DZA65_RS05045	0.21	-0.2
1,039,779	+		DZA65_RS05045	0.21	+1.4
1,039,871	+		DZA65_RS05045	0.24	-1.1
1,039,871	+		DZA65_RS05045	0.24	-1.2
1,039,871	+		DZA65_RS05045	0.24	+0.5
1,039,872	-		DZA65_RS05045	0.24	+0.6
1,039,935	-		DZA65_RS05045	0.26	+0.4
1,039,965	+		DZA65_RS05045	0.27	-2.5
1,039,966	-		DZA65_RS05045	0.27	-0.6
1,039,966	-		DZA65_RS05045	0.27	-0.4
1,039,966	-		DZA65_RS05045	0.27	-1.3
1,039,966	-		DZA65_RS05045	0.27	+0.2
1,040,024	+		DZA65_RS05045	0.29	-0.5
1,040,040	+		DZA65_RS05045	0.30	-0.1
1,040,040	+		DZA65_RS05045	0.30	+0.6
1,040,040	+		DZA65_RS05045	0.30	-0.0
1,040,040	+		DZA65_RS05045	0.30	+0.2
1,040,041	-		DZA65_RS05045	0.30	+2.4
1,040,041	-		DZA65_RS05045	0.30	-0.2
1,040,041	-		DZA65_RS05045	0.30	-0.6