Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04905

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,015,652	+		DZA65_RS04900	0.17	-0.9
1,015,653	-		DZA65_RS04900	0.17	-0.1
1,015,653	-		DZA65_RS04900	0.17	-0.7
1,015,660	-		DZA65_RS04900	0.17	+0.7
1,015,730	-		DZA65_RS04900	0.23	-0.7
1,015,804	-		DZA65_RS04900	0.29	+1.5
1,015,899	-		DZA65_RS04900	0.37	+0.1
1,015,928	+		DZA65_RS04900	0.40	+0.4
1,015,929	-		DZA65_RS04900	0.40	-0.5
1,015,973	+		DZA65_RS04900	0.44	-0.1
1,016,086	-		DZA65_RS04900	0.53	-0.8
1,016,086	-		DZA65_RS04900	0.53	+0.2
1,016,086	-		DZA65_RS04900	0.53	-0.5
1,016,131	-		DZA65_RS04900	0.57	+0.3
1,016,152	+		DZA65_RS04900	0.58	+0.7
1,016,152	+		DZA65_RS04900	0.58	-1.0
1,016,152	+		DZA65_RS04900	0.58	-0.9
1,016,153	-		DZA65_RS04900	0.59	+0.4
1,016,155	-		DZA65_RS04900	0.59	+0.1
1,016,178	+		DZA65_RS04900	0.61	-1.9
1,016,178	+		DZA65_RS04900	0.61	+0.9
1,016,178	+		DZA65_RS04900	0.61	-0.0
1,016,179	-		DZA65_RS04900	0.61	-0.1
1,016,179	-		DZA65_RS04900	0.61	-0.2
1,016,228	+		DZA65_RS04900	0.65	-0.2
1,016,228	+		DZA65_RS04900	0.65	-0.6
1,016,228	+		DZA65_RS04900	0.65	+0.2
1,016,228	+		DZA65_RS04900	0.65	-1.2
1,016,228	+		DZA65_RS04900	0.65	+0.6
1,016,228	+		DZA65_RS04900	0.65	-0.3
1,016,228	+		DZA65_RS04900	0.65	+1.5
1,016,228	+		DZA65_RS04900	0.65	+1.1
1,016,229	-		DZA65_RS04900	0.65	-1.2
1,016,229	-		DZA65_RS04900	0.65	-0.5
1,016,229	-		DZA65_RS04900	0.65	-1.8
1,016,229	-		DZA65_RS04900	0.65	-1.2
1,016,229	-		DZA65_RS04900	0.65	+0.1
1,016,229	-		DZA65_RS04900	0.65	+0.2
1,016,232	+		DZA65_RS04900	0.65	-0.2
1,016,233	-		DZA65_RS04900	0.65	-0.8
1,016,233	-		DZA65_RS04900	0.65	-2.5
1,016,233	-		DZA65_RS04900	0.65	-0.5
1,016,233	-		DZA65_RS04900	0.65	+0.4
1,016,289	+		DZA65_RS04900	0.70	+1.3
1,016,290	-				+0.8
1,016,290	-		DZA65_RS04900	0.70	-1.0
1,016,290	-		DZA65_RS04900	0.70	-2.5
1,016,303	+		DZA65_RS04900	0.71	-0.2
1,016,303	+		DZA65_RS04900	0.71	-0.5
1,016,304	-		DZA65_RS04900	0.71	-1.0
1,016,304	-		DZA65_RS04900	0.71	+2.0
1,016,451	+		DZA65_RS04900	0.83	+0.8
1,016,464	-		DZA65_RS04900	0.84	+0.2
1,016,686	+				-2.1
1,016,686	+				+0.7
1,016,686	+				+1.5
1,016,686	+				-0.9
1,016,686	+				+1.1
1,016,687	-				-1.5
1,016,687	-				-0.2
1,016,687	-				+1.9
1,016,730	-		DZA65_RS04905	0.18	+1.1
1,016,730	-		DZA65_RS04905	0.18	-0.2
1,016,750	+		DZA65_RS04905	0.23	+0.2
1,016,750	+		DZA65_RS04905	0.23	+0.8
1,016,751	-		DZA65_RS04905	0.23	+1.1
1,016,751	-		DZA65_RS04905	0.23	+2.2
1,016,751	-		DZA65_RS04905	0.23	-2.0
1,016,751	-		DZA65_RS04905	0.23	+0.8
1,016,752	+		DZA65_RS04905	0.23	-1.4
1,016,752	+		DZA65_RS04905	0.23	-0.8
1,016,800	-		DZA65_RS04905	0.34	+0.8
1,016,800	-		DZA65_RS04905	0.34	-1.5
1,017,077	+				-0.2
1,017,077	+				-0.9
1,017,086	+				-1.5
1,017,103	+				-0.7
1,017,103	+				+0.3
1,017,164	+				+0.1
1,017,164	+				-1.2
1,017,164	+				-1.2
1,017,164	+				-0.2
1,017,164	+				-0.2
1,017,164	+				-0.2
1,017,165	-				+0.8
1,017,165	-				-0.8
1,017,205	+				-1.4
1,017,205	+				+1.0
1,017,205	+				+0.1
1,017,205	+				-0.8
1,017,205	+				+0.1
1,017,205	+				-0.5
1,017,205	+				-0.1
1,017,205	+				+0.2
1,017,205	+				-0.3
1,017,205	+				+0.6
1,017,205	+				+1.1
1,017,205	+				+0.6
1,017,205	+				+1.2
1,017,206	-				-0.2
1,017,206	-				+0.2
1,017,206	-				+0.1
1,017,206	-				-0.3
1,017,206	-				+0.6
1,017,206	-				+1.8
1,017,206	-				+0.5
1,017,206	-				-0.6
1,017,209	+				-0.7
1,017,210	-				+2.1
1,017,210	-				-0.8
1,017,245	+				-0.2
1,017,266	+				-0.1
1,017,350	+		DZA65_RS04910	0.15	-1.7
1,017,350	+		DZA65_RS04910	0.15	+1.2
1,017,350	+		DZA65_RS04910	0.15	-0.5
1,017,350	+		DZA65_RS04910	0.15	+1.0
1,017,351	-		DZA65_RS04910	0.15	+0.4
1,017,351	-		DZA65_RS04910	0.15	-0.2
1,017,397	+		DZA65_RS04910	0.18	+0.2
1,017,397	+		DZA65_RS04910	0.18	-0.3
1,017,404	-		DZA65_RS04910	0.18	-0.7
1,017,422	+		DZA65_RS04910	0.19	-0.4
1,017,422	+		DZA65_RS04910	0.19	+0.2
1,017,422	+		DZA65_RS04910	0.19	+1.0
1,017,422	+		DZA65_RS04910	0.19	-0.8
1,017,422	+		DZA65_RS04910	0.19	-1.2
1,017,423	-				-0.2
1,017,423	-		DZA65_RS04910	0.19	+0.2
1,017,425	+		DZA65_RS04910	0.19	+0.6
1,017,455	+		DZA65_RS04910	0.21	+1.5
1,017,456	-		DZA65_RS04910	0.21	+0.1
1,017,498	+		DZA65_RS04910	0.24	-0.8
1,017,498	+		DZA65_RS04910	0.24	+0.9
1,017,498	+		DZA65_RS04910	0.24	-1.2
1,017,498	+		DZA65_RS04910	0.24	-0.4
1,017,498	+		DZA65_RS04910	0.24	+1.3
1,017,498	+		DZA65_RS04910	0.24	-0.6
1,017,498	+		DZA65_RS04910	0.24	+0.2
1,017,498	+		DZA65_RS04910	0.24	-0.5
1,017,498	+		DZA65_RS04910	0.24	-1.2
1,017,499	-		DZA65_RS04910	0.24	-0.3
1,017,499	-		DZA65_RS04910	0.24	-0.6
1,017,499	-		DZA65_RS04910	0.24	+0.8
1,017,499	-		DZA65_RS04910	0.24	-0.0
1,017,500	+		DZA65_RS04910	0.24	+1.1
1,017,500	+		DZA65_RS04910	0.24	-0.8
1,017,500	+		DZA65_RS04910	0.24	+1.2
1,017,500	+		DZA65_RS04910	0.24	-0.7
1,017,500	+		DZA65_RS04910	0.24	-0.2
1,017,500	+		DZA65_RS04910	0.24	-0.6
1,017,500	+		DZA65_RS04910	0.24	+1.4
1,017,500	+		DZA65_RS04910	0.24	-0.2
1,017,501	-		DZA65_RS04910	0.24	-0.7
1,017,501	-		DZA65_RS04910	0.24	-0.9
1,017,501	-		DZA65_RS04910	0.24	-0.4
1,017,501	-		DZA65_RS04910	0.24	+0.3
1,017,501	-		DZA65_RS04910	0.24	-0.2
1,017,501	-		DZA65_RS04910	0.24	-0.6
1,017,501	-		DZA65_RS04910	0.24	-2.7
1,017,571	+		DZA65_RS04910	0.28	-0.5
1,017,578	+		DZA65_RS04910	0.28	-1.8
1,017,579	-		DZA65_RS04910	0.28	-0.0
1,017,579	-		DZA65_RS04910	0.28	+1.0
1,017,579	-		DZA65_RS04910	0.28	-1.4
1,017,579	-		DZA65_RS04910	0.28	-0.2
1,017,695	+		DZA65_RS04910	0.35	+0.2
1,017,696	-		DZA65_RS04910	0.35	+0.8
1,017,721	-		DZA65_RS04910	0.37	-0.2
1,017,741	+		DZA65_RS04910	0.38	-1.3
1,017,741	+		DZA65_RS04910	0.38	-1.4
1,017,741	+		DZA65_RS04910	0.38	+1.2
1,017,741	+		DZA65_RS04910	0.38	-0.2
1,017,741	+		DZA65_RS04910	0.38	-0.6
1,017,741	+		DZA65_RS04910	0.38	-0.8
1,017,741	+		DZA65_RS04910	0.38	+0.2
1,017,742	-		DZA65_RS04910	0.38	-1.0
1,017,742	-		DZA65_RS04910	0.38	-0.4
1,017,830	+				-0.2
1,017,830	+		DZA65_RS04910	0.43	-1.6
1,017,831	-		DZA65_RS04910	0.43	+2.1
1,017,898	-		DZA65_RS04910	0.47	-2.7
1,017,911	+		DZA65_RS04910	0.48	-0.6
1,017,911	+		DZA65_RS04910	0.48	+0.2
1,017,912	-		DZA65_RS04910	0.48	+1.6
1,017,912	-		DZA65_RS04910	0.48	+0.1
1,017,912	-		DZA65_RS04910	0.48	+0.3
1,017,968	+		DZA65_RS04910	0.51	-0.7
1,017,992	+		DZA65_RS04910	0.53	+1.4
1,017,992	+		DZA65_RS04910	0.53	-0.3
1,017,992	+		DZA65_RS04910	0.53	+0.8
1,017,993	-				-1.2
1,017,993	-		DZA65_RS04910	0.53	+0.1
1,017,993	-		DZA65_RS04910	0.53	-2.7
1,017,993	-		DZA65_RS04910	0.53	-0.6
1,018,004	-		DZA65_RS04910	0.53	-0.8
1,018,023	+		DZA65_RS04910	0.55	-0.5
1,018,023	+		DZA65_RS04910	0.55	-1.7
1,018,024	-		DZA65_RS04910	0.55	+0.1
1,018,050	-		DZA65_RS04910	0.56	-0.5
1,018,061	-		DZA65_RS04910	0.57	-0.2
1,018,070	+		DZA65_RS04910	0.57	-0.2
1,018,071	-				-0.2
1,018,071	-		DZA65_RS04910	0.57	-1.3
1,018,072	+		DZA65_RS04910	0.57	+0.1
1,018,072	+		DZA65_RS04910	0.57	+0.6
1,018,072	+		DZA65_RS04910	0.57	+0.8
1,018,072	+		DZA65_RS04910	0.57	-1.8
1,018,072	+		DZA65_RS04910	0.57	+0.5
1,018,073	-		DZA65_RS04910	0.57	+0.9
1,018,073	-		DZA65_RS04910	0.57	-0.9
1,018,073	-		DZA65_RS04910	0.57	-0.8
1,018,073	-		DZA65_RS04910	0.57	-1.2