Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04890

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,013,250	-		DZA65_RS04885	0.60	+0.8
1,013,295	+		DZA65_RS04885	0.62	-0.2
1,013,295	+		DZA65_RS04885	0.62	-0.5
1,013,298	+		DZA65_RS04885	0.62	+0.5
1,013,311	-		DZA65_RS04885	0.63	-0.2
1,013,411	-		DZA65_RS04885	0.68	-0.2
1,013,427	+		DZA65_RS04885	0.69	+0.8
1,013,428	-				+1.6
1,013,428	-		DZA65_RS04885	0.69	+0.8
1,013,428	-		DZA65_RS04885	0.69	+0.2
1,013,430	+		DZA65_RS04885	0.69	-2.0
1,013,430	+		DZA65_RS04885	0.69	-0.1
1,013,431	-		DZA65_RS04885	0.70	-0.6
1,013,486	-		DZA65_RS04885	0.72	-0.2
1,013,518	+		DZA65_RS04885	0.74	+0.1
1,013,518	+		DZA65_RS04885	0.74	+0.2
1,013,519	-		DZA65_RS04885	0.74	-1.0
1,013,519	-		DZA65_RS04885	0.74	-0.4
1,013,519	-		DZA65_RS04885	0.74	+0.8
1,013,519	-		DZA65_RS04885	0.74	+0.8
1,013,595	+		DZA65_RS04885	0.78	-0.2
1,013,653	+		DZA65_RS04885	0.81	+0.1
1,013,654	-		DZA65_RS04885	0.81	+0.1
1,013,684	+		DZA65_RS04885	0.83	+0.3
1,013,684	+		DZA65_RS04885	0.83	-0.2
1,013,685	-		DZA65_RS04885	0.83	-1.2
1,013,685	-		DZA65_RS04885	0.83	-0.7
1,013,686	+		DZA65_RS04885	0.83	-0.2
1,013,699	+		DZA65_RS04885	0.84	-1.9
1,013,703	+		DZA65_RS04885	0.84	+0.5
1,013,703	+		DZA65_RS04885	0.84	-1.3
1,013,747	+		DZA65_RS04885	0.86	+0.8
1,013,747	+		DZA65_RS04885	0.86	-0.1
1,013,747	+		DZA65_RS04885	0.86	+1.1
1,013,747	+		DZA65_RS04885	0.86	-0.2
1,013,748	-		DZA65_RS04885	0.86	-0.6
1,013,748	-		DZA65_RS04885	0.86	-0.7
1,013,764	-		DZA65_RS04885	0.87	+0.3
1,013,768	-				-0.8
1,013,768	-		DZA65_RS04885	0.87	+0.8
1,013,775	+		DZA65_RS04885	0.88	-0.5
1,013,886	+				+0.4
1,013,893	-				-1.7
1,013,893	-				+0.2
1,013,893	-				+2.5
1,013,919	+				-1.2
1,013,934	-				+0.4
1,013,934	-				+1.4
1,014,025	+				-1.4
1,014,025	+				-0.1
1,014,026	-				+1.0
1,014,083	+				-1.8
1,014,083	+				+0.1
1,014,084	-				+0.3
1,014,084	-				-0.9
1,014,134	-				+0.6
1,014,146	-				+0.4
1,014,155	+				-1.8
1,014,241	+				-1.2
1,014,242	-				+1.1
1,014,244	+				-0.8
1,014,244	+				-1.1
1,014,244	+				+0.4
1,014,244	+				-1.2
1,014,245	-				-1.0
1,014,245	-				-0.2
1,014,245	-				+1.3
1,014,245	-				+1.8
1,014,245	-				-0.5
1,014,256	+				+0.1
1,014,274	+				+0.4
1,014,277	+				-0.2
1,014,278	-				+0.3
1,014,315	-		DZA65_RS04890	0.16	-1.1
1,014,317	+		DZA65_RS04890	0.16	-0.7
1,014,318	-		DZA65_RS04890	0.16	+2.4
1,014,319	+		DZA65_RS04890	0.16	+0.7
1,014,319	+		DZA65_RS04890	0.16	+0.8
1,014,320	-		DZA65_RS04890	0.17	-1.8
1,014,329	+		DZA65_RS04890	0.18	-0.2
1,014,330	-		DZA65_RS04890	0.19	-1.4
1,014,355	+		DZA65_RS04890	0.24	+0.8
1,014,355	+		DZA65_RS04890	0.24	-0.6
1,014,356	-		DZA65_RS04890	0.24	+1.4
1,014,356	-		DZA65_RS04890	0.24	+1.2
1,014,367	+		DZA65_RS04890	0.26	-1.5
1,014,378	+		DZA65_RS04890	0.28	+1.1
1,014,466	+		DZA65_RS04890	0.46	+2.8
1,014,484	-		DZA65_RS04890	0.49	-1.2
1,014,488	+		DZA65_RS04890	0.50	-1.9
1,014,488	+		DZA65_RS04890	0.50	+1.6
1,014,488	+		DZA65_RS04890	0.50	-0.6
1,014,489	-		DZA65_RS04890	0.50	-1.0
1,014,489	-		DZA65_RS04890	0.50	+0.7
1,014,489	-		DZA65_RS04890	0.50	-0.8
1,014,489	-		DZA65_RS04890	0.50	+0.8
1,014,498	-		DZA65_RS04890	0.52	+1.8
1,014,498	-		DZA65_RS04890	0.52	+0.5
1,014,535	+		DZA65_RS04890	0.59	+0.8
1,014,535	+		DZA65_RS04890	0.59	+3.1
1,014,535	+		DZA65_RS04890	0.59	+0.8
1,014,535	+		DZA65_RS04890	0.59	+0.5
1,014,536	-		DZA65_RS04890	0.60	+0.4
1,014,536	-		DZA65_RS04890	0.60	+0.2
1,014,536	-		DZA65_RS04890	0.60	+0.2
1,014,536	-		DZA65_RS04890	0.60	+0.1
1,014,556	+		DZA65_RS04890	0.63	+0.2
1,014,556	+		DZA65_RS04890	0.63	+0.1
1,014,560	-		DZA65_RS04890	0.64	-1.0
1,014,584	-		DZA65_RS04890	0.69	+1.8
1,014,608	-		DZA65_RS04890	0.74	+0.3
1,014,613	+		DZA65_RS04890	0.75	+0.2
1,014,614	-		DZA65_RS04890	0.75	-0.1
1,014,614	-		DZA65_RS04890	0.75	-0.1
1,014,614	-		DZA65_RS04890	0.75	-0.5
1,014,614	-		DZA65_RS04890	0.75	+1.8
1,014,616	+		DZA65_RS04890	0.75	-0.3
1,014,616	+		DZA65_RS04890	0.75	+0.3
1,014,616	+		DZA65_RS04890	0.75	-2.0
1,014,617	-		DZA65_RS04890	0.76	+1.0
1,014,617	-		DZA65_RS04890	0.76	+0.2
1,014,617	-		DZA65_RS04890	0.76	+0.6
1,014,618	+		DZA65_RS04890	0.76	+0.1
1,014,618	+		DZA65_RS04890	0.76	-0.5
1,014,619	-		DZA65_RS04890	0.76	+0.4
1,014,619	-		DZA65_RS04890	0.76	-0.7
1,014,619	-		DZA65_RS04890	0.76	-0.5
1,014,676	+		DZA65_RS04890	0.87	+0.4
1,014,676	+		DZA65_RS04890	0.87	-1.5
1,014,677	-		DZA65_RS04890	0.88	-2.0
1,014,677	-		DZA65_RS04890	0.88	+0.4
1,014,677	-		DZA65_RS04890	0.88	+0.4
1,014,853	+				-0.2
1,014,853	+				+2.0
1,014,854	-				-1.2
1,014,854	-				+0.3
1,014,877	-				-0.8
1,014,877	-				-0.3
1,014,877	-				-0.3
1,014,877	-				-0.3
1,014,877	-				-0.4
1,014,877	-				-0.1
1,014,877	-				+0.8
1,014,877	-				-2.2
1,014,877	-				+0.2
1,014,879	-				-0.0
1,014,879	-				-0.2
1,014,879	-				-0.2
1,014,879	-				+0.8
1,014,879	-				-0.8
1,014,879	-				+0.1
1,014,879	-				-0.0
1,015,047	-		DZA65_RS04895	0.39	+0.1
1,015,047	-		DZA65_RS04895	0.39	+0.6
1,015,069	-		DZA65_RS04895	0.44	+0.9
1,015,108	+		DZA65_RS04895	0.53	+1.5
1,015,108	+		DZA65_RS04895	0.53	-1.6
1,015,108	+		DZA65_RS04895	0.53	+1.3
1,015,108	+		DZA65_RS04895	0.53	+0.8
1,015,109	-		DZA65_RS04895	0.53	-2.0
1,015,109	-		DZA65_RS04895	0.53	-0.4
1,015,178	+		DZA65_RS04895	0.69	-1.1
1,015,178	+		DZA65_RS04895	0.69	+0.8
1,015,178	+		DZA65_RS04895	0.69	+0.2
1,015,178	+		DZA65_RS04895	0.69	-0.5
1,015,179	-		DZA65_RS04895	0.69	+0.5
1,015,179	-		DZA65_RS04895	0.69	-1.7
1,015,207	+		DZA65_RS04895	0.76	-0.2
1,015,207	+		DZA65_RS04895	0.76	-0.4
1,015,207	+		DZA65_RS04895	0.76	+0.2
1,015,207	+		DZA65_RS04895	0.76	-0.8
1,015,256	+		DZA65_RS04895	0.87	-0.2
1,015,257	-				-1.8
1,015,309	-				+1.1
1,015,313	+				-1.8
1,015,313	+				+0.5
1,015,314	-				-1.7
1,015,314	-				+1.0
1,015,318	+				+1.2
1,015,318	+				+1.0
1,015,366	+				+0.9
1,015,367	-				-0.2
1,015,367	-				+0.8
1,015,370	+				-1.3
1,015,371	-				+0.1
1,015,380	-				+0.8
1,015,392	+				+0.5
1,015,411	+				-1.3
1,015,411	+				+1.8
1,015,412	-				-0.6
1,015,551	-				-0.4
1,015,557	+				-1.2
1,015,557	+				-0.8
1,015,557	+				-0.2
1,015,557	+				-0.2
1,015,557	+				+0.3
1,015,557	+				-2.2
1,015,557	+				-0.5
1,015,557	+				+1.6
1,015,558	-				-0.9
1,015,558	-				+1.5
1,015,558	-				-0.1
1,015,558	-				-0.2
1,015,558	-				+0.8
1,015,558	-				-0.7
1,015,561	+				-0.4
1,015,561	+				+0.8
1,015,561	+				+0.0
1,015,561	+				+0.5
1,015,561	+				+0.5
1,015,561	+				-0.9
1,015,561	+				+0.1
1,015,562	-				-0.2
1,015,562	-				-0.0
1,015,562	-				+0.1
1,015,562	-				-1.5
1,015,562	-				+0.0
1,015,588	+		DZA65_RS04900	0.12	-1.5
1,015,597	+		DZA65_RS04900	0.12	+0.2
1,015,597	+		DZA65_RS04900	0.12	+0.8
1,015,598	-		DZA65_RS04900	0.12	-1.8
1,015,652	+		DZA65_RS04900	0.17	-0.9
1,015,653	-		DZA65_RS04900	0.17	-0.1
1,015,653	-		DZA65_RS04900	0.17	-0.7
1,015,660	-		DZA65_RS04900	0.17	+0.7
1,015,730	-		DZA65_RS04900	0.23	-0.7