Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04695 and DZA65_RS04700 are separated by 308 nucleotides DZA65_RS04700 and DZA65_RS04705 overlap by 11 nucleotides DZA65_RS04705 and DZA65_RS04710 are separated by 307 nucleotides
DZA65_RS04695: DZA65_RS04695 - IS110 family transposase, at 977,675 to 978,679
_RS04695
DZA65_RS04700: DZA65_RS04700 - transposase, at 978,988 to 979,191
_RS04700
DZA65_RS04705: DZA65_RS04705 - transposase, at 979,181 to 979,800
_RS04705
DZA65_RS04710: DZA65_RS04710 - IS110 family transposase, at 980,108 to 981,111
_RS04710
Position (kb) 978
979
980 Strain fitness (log2 ratio) -2
-1
0
1 at 978.909 kb on + strand at 978.909 kb on + strand at 978.909 kb on + strand at 978.909 kb on + strand at 978.909 kb on + strand at 978.956 kb on - strand at 978.956 kb on - strand at 978.956 kb on - strand at 978.988 kb on - strand at 979.170 kb on + strand, within DZA65_RS04700 at 979.178 kb on - strand at 979.253 kb on - strand, within DZA65_RS04705 at 979.716 kb on + strand, within DZA65_RS04705
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 978,909 + +0.6 978,909 + -0.6 978,909 + -0.0 978,909 + +1.6 978,909 + -0.2 978,956 - -2.2 978,956 - +0.5 978,956 - +1.1 978,988 - -0.8 979,170 + DZA65_RS04700 0.89 -1.0 979,178 - -1.4 979,253 - DZA65_RS04705 0.12 -1.8 979,716 + DZA65_RS04705 0.86 +1.3
Or see this region's nucleotide sequence