Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03870 and DZA65_RS03875 are separated by 56 nucleotides DZA65_RS03875 and DZA65_RS03880 are separated by 16 nucleotides
DZA65_RS03870: DZA65_RS03870 - sugar ABC transporter substrate-binding protein, at 821,562 to 822,500
_RS03870
DZA65_RS03875: DZA65_RS03875 - sugar ABC transporter ATP-binding protein, at 822,557 to 824,104
_RS03875
DZA65_RS03880: DZA65_RS03880 - ABC transporter permease, at 824,121 to 825,155
_RS03880
Position (kb) 822
823
824
825 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 821.572 kb on + strand at 821.572 kb on + strand at 821.573 kb on - strand at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.946 kb on + strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 821.947 kb on - strand, within DZA65_RS03870 at 822.053 kb on + strand, within DZA65_RS03870 at 822.053 kb on + strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.054 kb on - strand, within DZA65_RS03870 at 822.097 kb on - strand, within DZA65_RS03870 at 822.398 kb on + strand, within DZA65_RS03870 at 822.398 kb on + strand, within DZA65_RS03870 at 822.398 kb on + strand, within DZA65_RS03870 at 822.399 kb on - strand, within DZA65_RS03870 at 822.399 kb on - strand, within DZA65_RS03870 at 822.498 kb on + strand at 822.499 kb on - strand at 822.499 kb on - strand at 822.499 kb on - strand at 822.499 kb on - strand at 822.578 kb on - strand at 822.692 kb on - strand at 822.692 kb on - strand at 822.816 kb on - strand, within DZA65_RS03875 at 822.816 kb on - strand, within DZA65_RS03875 at 822.944 kb on + strand, within DZA65_RS03875 at 822.944 kb on + strand, within DZA65_RS03875 at 822.945 kb on - strand, within DZA65_RS03875 at 822.945 kb on - strand, within DZA65_RS03875 at 822.945 kb on - strand, within DZA65_RS03875 at 822.945 kb on - strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.960 kb on + strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 822.961 kb on - strand, within DZA65_RS03875 at 823.148 kb on + strand, within DZA65_RS03875 at 823.148 kb on + strand, within DZA65_RS03875 at 823.148 kb on + strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.149 kb on - strand, within DZA65_RS03875 at 823.200 kb on + strand, within DZA65_RS03875 at 823.422 kb on + strand, within DZA65_RS03875 at 823.422 kb on + strand, within DZA65_RS03875 at 823.422 kb on + strand, within DZA65_RS03875 at 823.423 kb on - strand, within DZA65_RS03875 at 823.423 kb on - strand, within DZA65_RS03875 at 823.426 kb on + strand, within DZA65_RS03875 at 823.426 kb on + strand, within DZA65_RS03875 at 823.426 kb on + strand, within DZA65_RS03875 at 823.427 kb on - strand, within DZA65_RS03875 at 823.427 kb on - strand, within DZA65_RS03875 at 823.510 kb on + strand, within DZA65_RS03875 at 823.511 kb on - strand, within DZA65_RS03875 at 823.511 kb on - strand, within DZA65_RS03875 at 823.511 kb on - strand, within DZA65_RS03875 at 823.544 kb on + strand, within DZA65_RS03875 at 823.545 kb on - strand, within DZA65_RS03875 at 823.545 kb on - strand, within DZA65_RS03875 at 823.545 kb on - strand, within DZA65_RS03875 at 823.636 kb on + strand, within DZA65_RS03875 at 823.688 kb on + strand, within DZA65_RS03875 at 823.688 kb on + strand, within DZA65_RS03875 at 823.689 kb on - strand, within DZA65_RS03875 at 824.261 kb on + strand, within DZA65_RS03880 at 824.262 kb on - strand, within DZA65_RS03880 at 824.262 kb on - strand, within DZA65_RS03880 at 824.262 kb on - strand, within DZA65_RS03880 at 824.262 kb on - strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.309 kb on + strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.310 kb on - strand, within DZA65_RS03880 at 824.313 kb on + strand, within DZA65_RS03880 at 824.313 kb on + strand, within DZA65_RS03880 at 824.313 kb on + strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand, within DZA65_RS03880 at 824.314 kb on - strand at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.412 kb on + strand, within DZA65_RS03880 at 824.413 kb on - strand, within DZA65_RS03880 at 824.413 kb on - strand, within DZA65_RS03880 at 824.413 kb on - strand, within DZA65_RS03880 at 824.413 kb on - strand, within DZA65_RS03880 at 824.413 kb on - strand, within DZA65_RS03880 at 824.418 kb on - strand, within DZA65_RS03880 at 824.691 kb on - strand, within DZA65_RS03880 at 824.691 kb on - strand, within DZA65_RS03880 at 824.691 kb on - strand, within DZA65_RS03880 at 824.696 kb on + strand, within DZA65_RS03880 at 824.725 kb on + strand, within DZA65_RS03880 at 824.725 kb on + strand, within DZA65_RS03880 at 824.725 kb on + strand, within DZA65_RS03880 at 824.726 kb on - strand, within DZA65_RS03880 at 824.726 kb on - strand, within DZA65_RS03880 at 824.726 kb on - strand, within DZA65_RS03880 at 824.744 kb on + strand, within DZA65_RS03880 at 824.744 kb on + strand, within DZA65_RS03880 at 824.744 kb on + strand, within DZA65_RS03880 at 824.744 kb on + strand, within DZA65_RS03880 at 824.744 kb on + strand, within DZA65_RS03880 at 824.745 kb on - strand, within DZA65_RS03880 at 824.745 kb on - strand, within DZA65_RS03880 at 824.745 kb on - strand, within DZA65_RS03880 at 824.745 kb on - strand, within DZA65_RS03880 at 824.745 kb on - strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.841 kb on + strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand at 824.842 kb on - strand, within DZA65_RS03880 at 824.842 kb on - strand, within DZA65_RS03880 at 825.005 kb on + strand, within DZA65_RS03880 at 825.005 kb on + strand, within DZA65_RS03880 at 825.069 kb on + strand at 825.069 kb on + strand at 825.069 kb on + strand at 825.069 kb on + strand at 825.072 kb on + strand at 825.072 kb on + strand at 825.073 kb on - strand at 825.073 kb on - strand at 825.073 kb on - strand at 825.073 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 821,572 + -1.6 821,572 + +0.6 821,573 - -0.6 821,946 + DZA65_RS03870 0.41 +0.4 821,946 + DZA65_RS03870 0.41 -0.5 821,946 + DZA65_RS03870 0.41 +0.6 821,946 + DZA65_RS03870 0.41 +0.6 821,946 + DZA65_RS03870 0.41 -0.5 821,946 + DZA65_RS03870 0.41 +0.3 821,946 + DZA65_RS03870 0.41 +0.3 821,946 + DZA65_RS03870 0.41 -0.1 821,947 - DZA65_RS03870 0.41 +0.3 821,947 - DZA65_RS03870 0.41 -1.9 821,947 - DZA65_RS03870 0.41 -1.7 821,947 - DZA65_RS03870 0.41 -2.1 821,947 - DZA65_RS03870 0.41 -0.4 821,947 - DZA65_RS03870 0.41 -0.3 822,053 + DZA65_RS03870 0.52 -1.8 822,053 + DZA65_RS03870 0.52 +1.3 822,054 - DZA65_RS03870 0.52 +1.4 822,054 - DZA65_RS03870 0.52 +1.6 822,054 - DZA65_RS03870 0.52 +1.7 822,054 - DZA65_RS03870 0.52 +2.4 822,097 - DZA65_RS03870 0.57 +0.8 822,398 + DZA65_RS03870 0.89 +0.7 822,398 + DZA65_RS03870 0.89 -0.5 822,398 + DZA65_RS03870 0.89 +1.9 822,399 - DZA65_RS03870 0.89 +0.2 822,399 - DZA65_RS03870 0.89 -1.5 822,498 + -1.0 822,499 - +1.9 822,499 - +0.4 822,499 - -0.1 822,499 - +0.9 822,578 - +0.9 822,692 - -0.6 822,692 - +0.3 822,816 - DZA65_RS03875 0.17 +0.3 822,816 - DZA65_RS03875 0.17 -1.0 822,944 + DZA65_RS03875 0.25 +1.1 822,944 + DZA65_RS03875 0.25 -1.3 822,945 - DZA65_RS03875 0.25 -0.1 822,945 - DZA65_RS03875 0.25 +0.6 822,945 - DZA65_RS03875 0.25 +0.2 822,945 - DZA65_RS03875 0.25 +0.9 822,960 + DZA65_RS03875 0.26 +1.4 822,960 + DZA65_RS03875 0.26 -0.5 822,960 + DZA65_RS03875 0.26 -0.1 822,960 + DZA65_RS03875 0.26 -0.2 822,960 + DZA65_RS03875 0.26 +0.9 822,960 + DZA65_RS03875 0.26 +0.9 822,960 + DZA65_RS03875 0.26 -1.3 822,961 - DZA65_RS03875 0.26 -0.7 822,961 - DZA65_RS03875 0.26 -1.0 822,961 - DZA65_RS03875 0.26 -0.0 822,961 - DZA65_RS03875 0.26 -1.1 822,961 - DZA65_RS03875 0.26 -1.3 822,961 - DZA65_RS03875 0.26 +0.4 823,148 + DZA65_RS03875 0.38 +0.9 823,148 + DZA65_RS03875 0.38 -0.8 823,148 + DZA65_RS03875 0.38 -1.7 823,149 - DZA65_RS03875 0.38 -0.3 823,149 - DZA65_RS03875 0.38 +0.3 823,149 - DZA65_RS03875 0.38 -0.4 823,149 - DZA65_RS03875 0.38 +1.5 823,149 - DZA65_RS03875 0.38 -0.3 823,149 - DZA65_RS03875 0.38 -2.5 823,149 - DZA65_RS03875 0.38 -0.3 823,149 - DZA65_RS03875 0.38 -0.9 823,149 - DZA65_RS03875 0.38 +0.3 823,149 - DZA65_RS03875 0.38 +0.5 823,149 - DZA65_RS03875 0.38 -0.5 823,149 - DZA65_RS03875 0.38 -0.1 823,149 - DZA65_RS03875 0.38 +0.0 823,200 + DZA65_RS03875 0.42 +0.1 823,422 + DZA65_RS03875 0.56 -0.1 823,422 + DZA65_RS03875 0.56 -0.6 823,422 + DZA65_RS03875 0.56 -0.4 823,423 - DZA65_RS03875 0.56 -0.1 823,423 - DZA65_RS03875 0.56 -0.6 823,426 + DZA65_RS03875 0.56 +0.9 823,426 + DZA65_RS03875 0.56 -0.3 823,426 + DZA65_RS03875 0.56 -1.5 823,427 - DZA65_RS03875 0.56 -1.5 823,427 - DZA65_RS03875 0.56 -0.5 823,510 + DZA65_RS03875 0.62 -1.1 823,511 - DZA65_RS03875 0.62 -1.0 823,511 - DZA65_RS03875 0.62 +0.1 823,511 - DZA65_RS03875 0.62 -1.2 823,544 + DZA65_RS03875 0.64 -0.3 823,545 - DZA65_RS03875 0.64 -1.5 823,545 - DZA65_RS03875 0.64 +0.4 823,545 - DZA65_RS03875 0.64 -1.4 823,636 + DZA65_RS03875 0.70 +0.2 823,688 + DZA65_RS03875 0.73 -0.4 823,688 + DZA65_RS03875 0.73 +0.7 823,689 - DZA65_RS03875 0.73 -0.1 824,261 + DZA65_RS03880 0.14 -0.1 824,262 - DZA65_RS03880 0.14 +0.2 824,262 - DZA65_RS03880 0.14 -0.0 824,262 - DZA65_RS03880 0.14 +0.5 824,262 - DZA65_RS03880 0.14 -1.7 824,309 + DZA65_RS03880 0.18 +0.4 824,309 + DZA65_RS03880 0.18 +0.9 824,309 + DZA65_RS03880 0.18 -0.1 824,309 + DZA65_RS03880 0.18 -0.5 824,309 + DZA65_RS03880 0.18 -1.6 824,309 + DZA65_RS03880 0.18 -0.6 824,309 + DZA65_RS03880 0.18 +1.3 824,309 + DZA65_RS03880 0.18 -1.1 824,309 + DZA65_RS03880 0.18 +0.0 824,310 - DZA65_RS03880 0.18 -0.0 824,310 - DZA65_RS03880 0.18 -0.6 824,310 - DZA65_RS03880 0.18 -0.1 824,310 - DZA65_RS03880 0.18 +1.0 824,310 - DZA65_RS03880 0.18 -0.9 824,310 - DZA65_RS03880 0.18 -1.0 824,310 - DZA65_RS03880 0.18 +0.7 824,313 + DZA65_RS03880 0.19 +0.1 824,313 + DZA65_RS03880 0.19 +1.9 824,313 + DZA65_RS03880 0.19 -1.0 824,314 - DZA65_RS03880 0.19 +1.2 824,314 - DZA65_RS03880 0.19 +0.9 824,314 - DZA65_RS03880 0.19 -0.2 824,314 - DZA65_RS03880 0.19 -0.1 824,314 - DZA65_RS03880 0.19 -0.6 824,314 - DZA65_RS03880 0.19 -1.1 824,314 - +2.2 824,412 + DZA65_RS03880 0.28 -0.4 824,412 + DZA65_RS03880 0.28 +0.4 824,412 + DZA65_RS03880 0.28 -1.1 824,412 + DZA65_RS03880 0.28 -1.3 824,412 + DZA65_RS03880 0.28 -2.6 824,412 + DZA65_RS03880 0.28 -2.0 824,412 + DZA65_RS03880 0.28 +0.9 824,412 + DZA65_RS03880 0.28 -0.0 824,413 - DZA65_RS03880 0.28 +0.2 824,413 - DZA65_RS03880 0.28 +1.2 824,413 - DZA65_RS03880 0.28 +0.3 824,413 - DZA65_RS03880 0.28 +2.1 824,413 - DZA65_RS03880 0.28 -0.8 824,418 - DZA65_RS03880 0.29 -0.3 824,691 - DZA65_RS03880 0.55 +0.6 824,691 - DZA65_RS03880 0.55 -0.7 824,691 - DZA65_RS03880 0.55 -1.1 824,696 + DZA65_RS03880 0.56 -0.6 824,725 + DZA65_RS03880 0.58 -0.9 824,725 + DZA65_RS03880 0.58 -0.4 824,725 + DZA65_RS03880 0.58 -1.0 824,726 - DZA65_RS03880 0.58 +0.9 824,726 - DZA65_RS03880 0.58 -1.1 824,726 - DZA65_RS03880 0.58 -0.7 824,744 + DZA65_RS03880 0.60 +0.5 824,744 + DZA65_RS03880 0.60 +0.5 824,744 + DZA65_RS03880 0.60 -0.1 824,744 + DZA65_RS03880 0.60 +0.9 824,744 + DZA65_RS03880 0.60 -0.7 824,745 - DZA65_RS03880 0.60 -0.3 824,745 - DZA65_RS03880 0.60 -0.4 824,745 - DZA65_RS03880 0.60 +0.4 824,745 - DZA65_RS03880 0.60 -1.5 824,745 - DZA65_RS03880 0.60 +0.4 824,841 + DZA65_RS03880 0.70 +0.9 824,841 + DZA65_RS03880 0.70 -1.1 824,841 + DZA65_RS03880 0.70 -0.7 824,841 + DZA65_RS03880 0.70 -1.7 824,841 + DZA65_RS03880 0.70 +0.5 824,841 + DZA65_RS03880 0.70 +0.0 824,841 + DZA65_RS03880 0.70 -0.4 824,841 + DZA65_RS03880 0.70 +0.1 824,841 + DZA65_RS03880 0.70 -1.0 824,841 + DZA65_RS03880 0.70 -1.0 824,842 - DZA65_RS03880 0.70 +0.2 824,842 - DZA65_RS03880 0.70 -0.5 824,842 - DZA65_RS03880 0.70 +0.2 824,842 - DZA65_RS03880 0.70 -1.3 824,842 - DZA65_RS03880 0.70 -0.9 824,842 - DZA65_RS03880 0.70 +0.9 824,842 - DZA65_RS03880 0.70 -1.5 824,842 - DZA65_RS03880 0.70 -1.5 824,842 - DZA65_RS03880 0.70 -0.7 824,842 - DZA65_RS03880 0.70 -0.7 824,842 - +0.9 824,842 - DZA65_RS03880 0.70 +0.4 824,842 - DZA65_RS03880 0.70 +4.0 825,005 + DZA65_RS03880 0.85 -2.1 825,005 + DZA65_RS03880 0.85 -0.1 825,069 + +0.0 825,069 + -1.0 825,069 + -0.8 825,069 + -0.7 825,072 + -0.5 825,072 + +0.7 825,073 - -0.7 825,073 - -1.1 825,073 - +1.7 825,073 - -0.2
Or see this region's nucleotide sequence