Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02850 and DZA65_RS02855 are separated by 444 nucleotides DZA65_RS02855 and DZA65_RS02860 are separated by 188 nucleotides DZA65_RS02860 and DZA65_RS02865 are separated by 49 nucleotides
DZA65_RS02850: DZA65_RS02850 - aspartate ammonia-lyase, at 611,660 to 613,099
_RS02850
DZA65_RS02855: DZA65_RS02855 - FxsA family protein, at 613,544 to 614,047
_RS02855
DZA65_RS02860: DZA65_RS02860 - co-chaperone GroES, at 614,236 to 614,529
_RS02860
DZA65_RS02865: DZA65_RS02865 - chaperonin GroEL, at 614,579 to 616,225
_RS02865
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 612.630 kb on + strand, within DZA65_RS02850 at 612.631 kb on - strand, within DZA65_RS02850 at 612.631 kb on - strand, within DZA65_RS02850 at 612.657 kb on + strand, within DZA65_RS02850 at 612.709 kb on - strand, within DZA65_RS02850 at 612.709 kb on - strand, within DZA65_RS02850 at 612.709 kb on - strand, within DZA65_RS02850 at 612.714 kb on + strand, within DZA65_RS02850 at 612.714 kb on + strand, within DZA65_RS02850 at 612.714 kb on + strand, within DZA65_RS02850 at 612.715 kb on - strand, within DZA65_RS02850 at 612.715 kb on - strand, within DZA65_RS02850 at 612.715 kb on - strand, within DZA65_RS02850 at 612.715 kb on - strand, within DZA65_RS02850 at 612.807 kb on + strand, within DZA65_RS02850 at 612.808 kb on - strand, within DZA65_RS02850 at 612.808 kb on - strand, within DZA65_RS02850 at 612.809 kb on + strand, within DZA65_RS02850 at 612.809 kb on + strand, within DZA65_RS02850 at 612.809 kb on + strand, within DZA65_RS02850 at 612.809 kb on + strand, within DZA65_RS02850 at 612.809 kb on + strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.810 kb on - strand, within DZA65_RS02850 at 612.939 kb on - strand, within DZA65_RS02850 at 612.944 kb on + strand, within DZA65_RS02850 at 612.945 kb on - strand, within DZA65_RS02850 at 612.945 kb on - strand, within DZA65_RS02850 at 612.956 kb on + strand at 612.996 kb on + strand at 612.996 kb on + strand at 612.997 kb on - strand at 612.997 kb on - strand at 612.997 kb on - strand at 613.032 kb on + strand at 613.035 kb on + strand at 613.035 kb on + strand at 613.035 kb on + strand at 613.035 kb on + strand at 613.035 kb on + strand at 613.036 kb on - strand at 613.036 kb on - strand at 613.036 kb on - strand at 613.060 kb on + strand at 613.061 kb on - strand at 613.061 kb on - strand at 613.064 kb on + strand at 613.065 kb on - strand at 613.065 kb on - strand at 613.065 kb on - strand at 613.065 kb on - strand at 613.065 kb on - strand at 613.065 kb on - strand at 613.087 kb on + strand at 613.087 kb on + strand at 613.087 kb on + strand at 613.088 kb on - strand at 613.090 kb on + strand at 613.090 kb on + strand at 613.090 kb on + strand at 613.091 kb on - strand at 613.091 kb on - strand at 613.091 kb on - strand at 613.113 kb on + strand at 613.113 kb on + strand at 613.113 kb on + strand at 613.114 kb on - strand at 613.114 kb on - strand at 613.115 kb on + strand at 613.115 kb on + strand at 613.116 kb on - strand at 613.116 kb on - strand at 613.116 kb on - strand at 613.116 kb on - strand at 613.129 kb on - strand at 613.138 kb on - strand at 613.138 kb on - strand at 613.144 kb on + strand at 613.144 kb on + strand at 613.144 kb on + strand at 613.144 kb on + strand at 613.145 kb on - strand at 613.145 kb on - strand at 613.204 kb on + strand at 613.209 kb on + strand at 613.210 kb on - strand at 613.210 kb on - strand at 613.221 kb on - strand at 613.221 kb on - strand at 613.249 kb on + strand at 613.250 kb on - strand at 613.250 kb on - strand at 613.250 kb on - strand at 613.321 kb on + strand at 613.321 kb on + strand at 613.321 kb on + strand at 613.321 kb on + strand at 613.322 kb on - strand at 613.322 kb on - strand at 613.356 kb on + strand at 613.356 kb on + strand at 613.357 kb on - strand at 613.357 kb on - strand at 613.357 kb on - strand at 613.370 kb on + strand at 613.371 kb on - strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.384 kb on + strand at 613.385 kb on - strand at 613.385 kb on - strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.386 kb on + strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.387 kb on - strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.390 kb on + strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.391 kb on - strand at 613.407 kb on + strand at 613.408 kb on - strand at 613.409 kb on + strand at 613.409 kb on + strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.410 kb on - strand at 613.414 kb on + strand at 613.414 kb on + strand at 613.415 kb on - strand at 613.419 kb on + strand at 613.419 kb on + strand at 613.419 kb on + strand at 613.419 kb on + strand at 613.420 kb on - strand at 613.420 kb on - strand at 613.420 kb on - strand at 613.420 kb on - strand at 613.437 kb on + strand at 613.437 kb on + strand at 613.437 kb on + strand at 613.438 kb on - strand at 613.438 kb on - strand at 613.438 kb on - strand at 613.438 kb on - strand at 613.445 kb on + strand at 613.445 kb on + strand at 613.446 kb on - strand at 613.471 kb on + strand at 613.478 kb on + strand at 613.499 kb on - strand at 613.509 kb on - strand at 613.509 kb on - strand at 613.520 kb on - strand at 613.524 kb on - strand at 613.524 kb on - strand at 613.583 kb on + strand at 613.583 kb on + strand at 613.597 kb on + strand, within DZA65_RS02855 at 613.598 kb on - strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.678 kb on + strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.679 kb on - strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.683 kb on + strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.684 kb on - strand, within DZA65_RS02855 at 613.687 kb on + strand, within DZA65_RS02855 at 613.687 kb on + strand, within DZA65_RS02855 at 613.688 kb on - strand, within DZA65_RS02855 at 613.763 kb on - strand, within DZA65_RS02855 at 613.776 kb on + strand, within DZA65_RS02855 at 613.791 kb on + strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 613.792 kb on - strand, within DZA65_RS02855 at 614.100 kb on + strand at 614.100 kb on + strand at 614.100 kb on + strand at 614.101 kb on - strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand at 614.154 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 612,630 + DZA65_RS02850 0.67 -1.4 612,631 - DZA65_RS02850 0.67 +1.1 612,631 - DZA65_RS02850 0.67 -0.8 612,657 + DZA65_RS02850 0.69 +1.0 612,709 - DZA65_RS02850 0.73 -0.2 612,709 - DZA65_RS02850 0.73 -0.5 612,709 - DZA65_RS02850 0.73 +0.1 612,714 + DZA65_RS02850 0.73 -0.0 612,714 + DZA65_RS02850 0.73 -0.4 612,714 + DZA65_RS02850 0.73 +0.2 612,715 - DZA65_RS02850 0.73 -0.8 612,715 - DZA65_RS02850 0.73 -0.5 612,715 - DZA65_RS02850 0.73 +1.0 612,715 - DZA65_RS02850 0.73 -0.1 612,807 + DZA65_RS02850 0.80 -0.6 612,808 - DZA65_RS02850 0.80 -0.0 612,808 - DZA65_RS02850 0.80 +0.0 612,809 + DZA65_RS02850 0.80 +0.1 612,809 + DZA65_RS02850 0.80 -0.1 612,809 + DZA65_RS02850 0.80 +3.7 612,809 + DZA65_RS02850 0.80 -0.0 612,809 + DZA65_RS02850 0.80 -1.0 612,810 - DZA65_RS02850 0.80 +1.0 612,810 - DZA65_RS02850 0.80 -2.6 612,810 - DZA65_RS02850 0.80 +0.1 612,810 - DZA65_RS02850 0.80 -0.3 612,810 - DZA65_RS02850 0.80 +0.6 612,810 - DZA65_RS02850 0.80 -0.2 612,939 - DZA65_RS02850 0.89 +0.4 612,944 + DZA65_RS02850 0.89 -0.3 612,945 - DZA65_RS02850 0.89 +0.4 612,945 - DZA65_RS02850 0.89 -0.0 612,956 + +0.5 612,996 + -0.3 612,996 + -0.3 612,997 - -0.9 612,997 - -0.6 612,997 - -0.3 613,032 + -0.9 613,035 + +0.5 613,035 + -1.0 613,035 + +0.5 613,035 + -0.0 613,035 + -2.8 613,036 - +0.5 613,036 - +1.3 613,036 - -0.6 613,060 + -0.0 613,061 - -2.2 613,061 - -0.3 613,064 + -1.5 613,065 - -0.6 613,065 - +0.2 613,065 - +1.3 613,065 - -0.2 613,065 - -0.0 613,065 - +0.1 613,087 + -1.2 613,087 + -1.0 613,087 + -0.6 613,088 - -1.9 613,090 + +1.3 613,090 + +0.4 613,090 + -0.2 613,091 - +1.0 613,091 - +0.2 613,091 - -0.8 613,113 + -1.5 613,113 + +0.4 613,113 + -2.2 613,114 - +2.1 613,114 - +0.9 613,115 + -2.2 613,115 + +0.6 613,116 - +0.3 613,116 - -0.5 613,116 - -0.7 613,116 - +0.8 613,129 - -1.8 613,138 - +0.4 613,138 - +0.1 613,144 + +1.8 613,144 + +0.4 613,144 + +0.1 613,144 + -0.7 613,145 - -0.0 613,145 - -1.2 613,204 + +0.6 613,209 + -0.0 613,210 - -0.4 613,210 - -0.4 613,221 - -0.0 613,221 - -0.2 613,249 + -0.2 613,250 - +1.0 613,250 - -1.6 613,250 - -1.6 613,321 + -0.8 613,321 + -1.7 613,321 + +0.2 613,321 + -2.0 613,322 - -0.0 613,322 - +0.2 613,356 + +2.1 613,356 + -0.1 613,357 - +0.5 613,357 - -0.0 613,357 - -0.3 613,370 + -1.2 613,371 - +0.6 613,384 + -1.3 613,384 + +2.7 613,384 + +0.5 613,384 + +1.3 613,384 + -0.3 613,385 - +0.1 613,385 - +0.5 613,386 + +2.2 613,386 + -0.6 613,386 + -0.3 613,386 + -1.3 613,386 + +1.2 613,386 + +1.0 613,387 - -1.2 613,387 - -0.8 613,387 - -1.3 613,387 - +0.5 613,387 - +0.4 613,387 - -2.0 613,387 - +0.7 613,387 - +1.0 613,387 - -1.3 613,390 + +1.0 613,390 + -2.2 613,390 + +0.3 613,390 + -0.6 613,390 + -0.0 613,390 + +0.2 613,391 - -0.3 613,391 - +1.5 613,391 - -0.4 613,391 - -1.9 613,391 - -0.2 613,407 + -0.6 613,408 - +1.4 613,409 + -0.3 613,409 + +0.9 613,410 - -0.2 613,410 - -1.2 613,410 - -0.0 613,410 - +0.3 613,410 - -0.2 613,414 + -0.3 613,414 + -1.5 613,415 - -0.7 613,419 + +0.4 613,419 + -1.0 613,419 + -0.4 613,419 + +0.4 613,420 - +0.7 613,420 - -1.6 613,420 - -1.6 613,420 - -0.4 613,437 + +0.4 613,437 + +1.0 613,437 + -0.6 613,438 - -0.6 613,438 - -2.0 613,438 - +0.4 613,438 - +2.3 613,445 + -0.4 613,445 + -2.2 613,446 - -0.2 613,471 + +0.1 613,478 + +0.7 613,499 - -1.7 613,509 - -0.6 613,509 - -0.0 613,520 - +0.5 613,524 - -0.9 613,524 - +0.3 613,583 + -0.0 613,583 + +2.0 613,597 + DZA65_RS02855 0.11 +2.3 613,598 - DZA65_RS02855 0.11 -0.3 613,678 + DZA65_RS02855 0.27 +1.4 613,678 + DZA65_RS02855 0.27 +1.5 613,678 + DZA65_RS02855 0.27 -0.3 613,678 + DZA65_RS02855 0.27 -0.3 613,678 + DZA65_RS02855 0.27 -1.0 613,678 + DZA65_RS02855 0.27 +0.5 613,678 + DZA65_RS02855 0.27 +1.0 613,679 - DZA65_RS02855 0.27 +1.0 613,679 - DZA65_RS02855 0.27 -0.4 613,679 - DZA65_RS02855 0.27 -1.3 613,679 - DZA65_RS02855 0.27 +0.3 613,683 + DZA65_RS02855 0.28 +0.1 613,683 + DZA65_RS02855 0.28 -1.3 613,683 + DZA65_RS02855 0.28 -1.5 613,683 + DZA65_RS02855 0.28 +0.1 613,683 + DZA65_RS02855 0.28 -2.5 613,683 + DZA65_RS02855 0.28 -2.6 613,683 + DZA65_RS02855 0.28 -0.1 613,683 + DZA65_RS02855 0.28 +1.6 613,683 + DZA65_RS02855 0.28 -0.2 613,684 - DZA65_RS02855 0.28 -0.2 613,684 - DZA65_RS02855 0.28 +0.6 613,684 - DZA65_RS02855 0.28 -0.0 613,684 - DZA65_RS02855 0.28 +0.2 613,684 - DZA65_RS02855 0.28 +1.2 613,687 + DZA65_RS02855 0.28 +0.4 613,687 + DZA65_RS02855 0.28 -0.6 613,688 - DZA65_RS02855 0.29 +1.1 613,763 - DZA65_RS02855 0.43 +1.7 613,776 + DZA65_RS02855 0.46 +1.4 613,791 + DZA65_RS02855 0.49 -1.6 613,792 - DZA65_RS02855 0.49 -1.1 613,792 - DZA65_RS02855 0.49 -0.0 613,792 - DZA65_RS02855 0.49 -1.5 614,100 + -0.0 614,100 + +0.2 614,100 + -0.6 614,101 - +1.0 614,154 + -0.3 614,154 + -0.5 614,154 + +0.2 614,154 + +1.2 614,154 + -1.0 614,154 + +2.3
Or see this region's nucleotide sequence