Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02165 and DZA65_RS02170 overlap by 10 nucleotides DZA65_RS02170 and DZA65_RS02175 are separated by 489 nucleotides DZA65_RS02175 and DZA65_RS02180 are separated by 11 nucleotides DZA65_RS02180 and DZA65_RS02185 are separated by 51 nucleotides
DZA65_RS02165: DZA65_RS02165 - GNAT family N-acetyltransferase, at 473,862 to 474,341
_RS02165
DZA65_RS02170: DZA65_RS02170 - DUF1778 domain-containing protein, at 474,332 to 474,604
_RS02170
DZA65_RS02175: DZA65_RS02175 - DUF4102 domain-containing protein, at 475,094 to 475,517
_RS02175
DZA65_RS02180: DZA65_RS02180 - IS5 family transposase, at 475,529 to 476,373
_RS02180
DZA65_RS02185: DZA65_RS02185 - DUF1778 domain-containing protein, at 476,425 to 476,646
_RS02185
Position (kb) 475
476 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 474.107 kb on + strand, within DZA65_RS02165 at 474.107 kb on + strand, within DZA65_RS02165 at 474.107 kb on + strand at 474.107 kb on + strand, within DZA65_RS02165 at 474.107 kb on + strand, within DZA65_RS02165 at 474.108 kb on - strand, within DZA65_RS02165 at 474.108 kb on - strand, within DZA65_RS02165 at 474.108 kb on - strand, within DZA65_RS02165 at 474.108 kb on - strand, within DZA65_RS02165 at 474.166 kb on + strand, within DZA65_RS02165 at 474.166 kb on + strand, within DZA65_RS02165 at 474.166 kb on + strand, within DZA65_RS02165 at 474.167 kb on - strand, within DZA65_RS02165 at 474.167 kb on - strand, within DZA65_RS02165 at 474.167 kb on - strand, within DZA65_RS02165 at 474.318 kb on + strand at 474.319 kb on - strand at 474.319 kb on - strand at 474.319 kb on - strand at 474.319 kb on - strand at 474.644 kb on + strand at 474.644 kb on + strand at 474.645 kb on - strand at 474.645 kb on - strand at 474.655 kb on - strand at 474.663 kb on + strand at 474.663 kb on + strand at 474.713 kb on - strand at 474.759 kb on + strand at 474.759 kb on + strand at 474.760 kb on - strand at 474.760 kb on - strand at 474.781 kb on - strand at 474.781 kb on - strand at 474.834 kb on + strand at 474.835 kb on - strand at 474.840 kb on - strand at 474.861 kb on + strand at 474.912 kb on + strand at 474.912 kb on + strand at 474.912 kb on + strand at 474.912 kb on + strand at 474.912 kb on + strand at 474.913 kb on - strand at 474.913 kb on - strand at 474.914 kb on + strand at 474.915 kb on - strand at 474.916 kb on + strand at 474.916 kb on + strand at 474.916 kb on + strand at 474.916 kb on + strand at 474.916 kb on + strand at 474.916 kb on + strand at 474.916 kb on + strand at 474.917 kb on - strand at 474.917 kb on - strand at 474.917 kb on - strand at 474.917 kb on - strand at 474.917 kb on - strand at 474.917 kb on - strand at 474.917 kb on - strand at 474.917 kb on - strand at 474.920 kb on + strand at 474.920 kb on + strand at 474.920 kb on + strand at 474.920 kb on + strand at 474.921 kb on - strand at 474.921 kb on - strand at 474.921 kb on - strand at 474.921 kb on - strand at 474.921 kb on - strand at 474.960 kb on + strand at 474.965 kb on - strand at 474.980 kb on + strand at 474.981 kb on - strand at 474.983 kb on - strand at 474.983 kb on - strand at 474.983 kb on - strand at 474.983 kb on - strand at 474.983 kb on - strand at 474.983 kb on - strand at 474.983 kb on - strand at 474.983 kb on - strand at 475.011 kb on + strand at 475.011 kb on + strand at 475.011 kb on + strand at 475.011 kb on + strand at 475.011 kb on + strand at 475.011 kb on + strand at 475.011 kb on + strand at 475.011 kb on + strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.012 kb on - strand at 475.021 kb on + strand at 475.022 kb on - strand at 475.022 kb on - strand at 475.022 kb on - strand at 475.024 kb on + strand at 475.037 kb on + strand at 475.037 kb on + strand at 475.050 kb on - strand at 475.050 kb on - strand at 475.050 kb on - strand at 475.072 kb on + strand at 475.072 kb on + strand at 475.072 kb on + strand at 475.073 kb on - strand at 475.073 kb on - strand at 475.089 kb on + strand at 475.089 kb on + strand at 475.089 kb on + strand at 475.089 kb on + strand at 475.089 kb on + strand at 475.089 kb on + strand at 475.089 kb on + strand at 475.089 kb on + strand at 475.089 kb on + strand at 475.089 kb on + strand at 475.090 kb on - strand at 475.090 kb on - strand at 475.090 kb on - strand at 475.090 kb on - strand at 475.090 kb on - strand at 475.090 kb on - strand at 475.090 kb on - strand at 475.090 kb on - strand at 475.090 kb on - strand at 475.090 kb on - strand at 475.090 kb on - strand at 475.090 kb on - strand at 475.093 kb on + strand at 475.093 kb on + strand at 475.093 kb on + strand at 475.093 kb on + strand at 475.093 kb on + strand at 475.093 kb on + strand at 475.094 kb on - strand at 475.094 kb on - strand at 475.094 kb on - strand at 475.108 kb on + strand at 475.145 kb on + strand, within DZA65_RS02175 at 475.145 kb on + strand, within DZA65_RS02175 at 475.145 kb on + strand, within DZA65_RS02175 at 475.145 kb on + strand, within DZA65_RS02175 at 475.145 kb on + strand, within DZA65_RS02175 at 475.145 kb on + strand, within DZA65_RS02175 at 475.145 kb on + strand, within DZA65_RS02175 at 475.145 kb on + strand, within DZA65_RS02175 at 475.146 kb on - strand, within DZA65_RS02175 at 475.146 kb on - strand, within DZA65_RS02175 at 475.146 kb on - strand, within DZA65_RS02175 at 475.146 kb on - strand, within DZA65_RS02175 at 475.146 kb on - strand, within DZA65_RS02175 at 475.146 kb on - strand, within DZA65_RS02175 at 475.146 kb on - strand, within DZA65_RS02175 at 475.146 kb on - strand, within DZA65_RS02175 at 475.146 kb on - strand, within DZA65_RS02175 at 475.168 kb on + strand, within DZA65_RS02175 at 475.169 kb on - strand, within DZA65_RS02175 at 475.169 kb on - strand, within DZA65_RS02175 at 475.169 kb on - strand, within DZA65_RS02175 at 475.169 kb on - strand, within DZA65_RS02175 at 475.199 kb on + strand, within DZA65_RS02175 at 475.199 kb on + strand, within DZA65_RS02175 at 475.199 kb on + strand, within DZA65_RS02175 at 475.200 kb on - strand, within DZA65_RS02175 at 475.200 kb on - strand, within DZA65_RS02175 at 475.200 kb on - strand, within DZA65_RS02175 at 475.200 kb on - strand, within DZA65_RS02175 at 475.200 kb on - strand, within DZA65_RS02175 at 475.200 kb on - strand, within DZA65_RS02175 at 475.247 kb on - strand, within DZA65_RS02175 at 475.296 kb on + strand, within DZA65_RS02175 at 475.296 kb on + strand, within DZA65_RS02175 at 475.296 kb on + strand, within DZA65_RS02175 at 475.297 kb on - strand, within DZA65_RS02175 at 475.297 kb on - strand, within DZA65_RS02175 at 475.301 kb on + strand, within DZA65_RS02175 at 475.301 kb on + strand, within DZA65_RS02175 at 475.329 kb on + strand, within DZA65_RS02175 at 475.378 kb on + strand, within DZA65_RS02175 at 475.378 kb on + strand, within DZA65_RS02175 at 475.379 kb on - strand, within DZA65_RS02175 at 475.379 kb on - strand, within DZA65_RS02175 at 475.379 kb on - strand, within DZA65_RS02175 at 475.379 kb on - strand, within DZA65_RS02175 at 475.388 kb on + strand, within DZA65_RS02175 at 475.388 kb on + strand, within DZA65_RS02175 at 475.388 kb on + strand, within DZA65_RS02175 at 475.388 kb on + strand, within DZA65_RS02175 at 475.389 kb on - strand, within DZA65_RS02175 at 475.389 kb on - strand, within DZA65_RS02175 at 475.389 kb on - strand, within DZA65_RS02175 at 475.389 kb on - strand, within DZA65_RS02175 at 475.389 kb on - strand, within DZA65_RS02175 at 475.457 kb on + strand, within DZA65_RS02175 at 475.457 kb on + strand, within DZA65_RS02175 at 475.474 kb on + strand, within DZA65_RS02175 at 475.474 kb on + strand, within DZA65_RS02175 at 475.499 kb on + strand at 475.500 kb on - strand at 475.500 kb on - strand at 475.531 kb on - strand at 475.535 kb on + strand at 475.536 kb on - strand at 475.536 kb on - strand at 475.574 kb on + strand at 475.574 kb on + strand at 475.574 kb on + strand at 475.575 kb on - strand at 475.575 kb on - strand at 475.575 kb on - strand at 475.579 kb on + strand at 475.580 kb on - strand at 475.580 kb on - strand at 475.587 kb on + strand at 475.732 kb on + strand, within DZA65_RS02180 at 475.751 kb on + strand, within DZA65_RS02180 at 475.751 kb on + strand, within DZA65_RS02180 at 475.761 kb on - strand, within DZA65_RS02180 at 475.770 kb on + strand, within DZA65_RS02180 at 475.771 kb on - strand, within DZA65_RS02180 at 476.251 kb on + strand, within DZA65_RS02180 at 476.282 kb on + strand, within DZA65_RS02180 at 476.282 kb on + strand, within DZA65_RS02180 at 476.376 kb on + strand at 476.423 kb on - strand at 476.426 kb on + strand at 476.427 kb on - strand at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185 at 476.463 kb on - strand, within DZA65_RS02185
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 474,107 + DZA65_RS02165 0.51 -0.3 474,107 + DZA65_RS02165 0.51 -2.4 474,107 + +0.1 474,107 + DZA65_RS02165 0.51 -1.1 474,107 + DZA65_RS02165 0.51 +0.3 474,108 - DZA65_RS02165 0.51 +1.2 474,108 - DZA65_RS02165 0.51 +1.4 474,108 - DZA65_RS02165 0.51 -0.5 474,108 - DZA65_RS02165 0.51 +3.6 474,166 + DZA65_RS02165 0.63 +0.7 474,166 + DZA65_RS02165 0.63 +0.2 474,166 + DZA65_RS02165 0.63 -0.8 474,167 - DZA65_RS02165 0.64 +1.4 474,167 - DZA65_RS02165 0.64 -0.1 474,167 - DZA65_RS02165 0.64 -0.2 474,318 + -0.2 474,319 - +0.1 474,319 - +1.1 474,319 - +2.1 474,319 - -1.6 474,644 + +0.5 474,644 + +0.6 474,645 - +0.2 474,645 - +0.7 474,655 - -2.0 474,663 + -0.3 474,663 + -0.5 474,713 - +0.7 474,759 + -1.8 474,759 + -0.6 474,760 - +0.3 474,760 - +1.1 474,781 - -0.4 474,781 - +0.5 474,834 + +0.7 474,835 - -0.8 474,840 - -0.2 474,861 + -1.1 474,912 + -1.3 474,912 + -0.1 474,912 + +1.6 474,912 + -0.3 474,912 + -0.9 474,913 - +1.3 474,913 - +0.5 474,914 + -0.7 474,915 - +0.7 474,916 + +0.5 474,916 + +0.8 474,916 + +0.6 474,916 + +2.6 474,916 + +0.6 474,916 + +0.5 474,916 + +0.3 474,917 - -1.3 474,917 - +0.3 474,917 - -0.4 474,917 - -0.2 474,917 - +1.5 474,917 - +1.6 474,917 - -1.3 474,917 - -1.2 474,920 + +0.1 474,920 + +0.1 474,920 + -0.9 474,920 + -0.3 474,921 - -1.2 474,921 - +0.1 474,921 - +1.3 474,921 - -0.9 474,921 - -2.1 474,960 + +2.1 474,965 - +0.3 474,980 + +0.3 474,981 - -0.2 474,983 - -0.2 474,983 - +0.1 474,983 - +0.2 474,983 - -1.1 474,983 - -0.9 474,983 - +0.2 474,983 - +0.5 474,983 - +0.1 475,011 + +1.1 475,011 + -1.0 475,011 + -1.2 475,011 + +0.0 475,011 + +0.6 475,011 + +2.1 475,011 + +1.1 475,011 + -0.6 475,012 - -0.4 475,012 - -1.8 475,012 - -0.5 475,012 - -0.3 475,012 - -0.1 475,012 - -2.6 475,012 - +0.5 475,012 - -0.9 475,012 - +1.5 475,012 - -1.3 475,012 - +1.5 475,012 - +0.1 475,012 - +1.8 475,012 - -0.7 475,012 - +1.4 475,012 - -0.3 475,012 - -0.5 475,021 + +0.5 475,022 - +0.7 475,022 - -0.4 475,022 - -0.2 475,024 + +0.9 475,037 + +0.7 475,037 + +0.5 475,050 - +0.1 475,050 - -0.5 475,050 - -0.1 475,072 + +0.4 475,072 + +0.1 475,072 + +1.4 475,073 - -0.1 475,073 - +0.1 475,089 + -2.1 475,089 + -2.8 475,089 + +0.1 475,089 + +1.1 475,089 + -0.4 475,089 + -0.8 475,089 + -1.1 475,089 + +1.1 475,089 + +0.2 475,089 + -0.3 475,090 - +4.1 475,090 - +0.1 475,090 - -0.7 475,090 - -0.9 475,090 - +1.1 475,090 - +0.5 475,090 - -0.2 475,090 - +0.4 475,090 - -0.9 475,090 - +0.2 475,090 - +1.1 475,090 - +0.1 475,093 + -0.1 475,093 + +0.5 475,093 + +0.3 475,093 + +0.4 475,093 + +0.1 475,093 + -0.4 475,094 - +1.7 475,094 - -0.5 475,094 - -1.5 475,108 + +0.2 475,145 + DZA65_RS02175 0.12 +1.1 475,145 + DZA65_RS02175 0.12 +0.8 475,145 + DZA65_RS02175 0.12 -0.8 475,145 + DZA65_RS02175 0.12 +0.6 475,145 + DZA65_RS02175 0.12 -1.3 475,145 + DZA65_RS02175 0.12 +0.6 475,145 + DZA65_RS02175 0.12 -0.5 475,145 + DZA65_RS02175 0.12 -0.5 475,146 - DZA65_RS02175 0.12 +1.3 475,146 - DZA65_RS02175 0.12 +0.9 475,146 - DZA65_RS02175 0.12 +0.1 475,146 - DZA65_RS02175 0.12 -0.8 475,146 - DZA65_RS02175 0.12 +0.4 475,146 - DZA65_RS02175 0.12 -0.5 475,146 - DZA65_RS02175 0.12 -1.9 475,146 - DZA65_RS02175 0.12 -0.7 475,146 - DZA65_RS02175 0.12 +0.1 475,168 + DZA65_RS02175 0.17 -0.9 475,169 - DZA65_RS02175 0.18 +0.1 475,169 - DZA65_RS02175 0.18 +3.9 475,169 - DZA65_RS02175 0.18 +0.5 475,169 - DZA65_RS02175 0.18 +0.5 475,199 + DZA65_RS02175 0.25 -0.9 475,199 + DZA65_RS02175 0.25 +0.2 475,199 + DZA65_RS02175 0.25 -1.3 475,200 - DZA65_RS02175 0.25 +0.1 475,200 - DZA65_RS02175 0.25 +0.5 475,200 - DZA65_RS02175 0.25 -0.5 475,200 - DZA65_RS02175 0.25 +0.8 475,200 - DZA65_RS02175 0.25 +0.4 475,200 - DZA65_RS02175 0.25 -2.3 475,247 - DZA65_RS02175 0.36 +0.5 475,296 + DZA65_RS02175 0.48 -0.6 475,296 + DZA65_RS02175 0.48 +0.8 475,296 + DZA65_RS02175 0.48 +0.1 475,297 - DZA65_RS02175 0.48 -1.3 475,297 - DZA65_RS02175 0.48 -0.9 475,301 + DZA65_RS02175 0.49 -0.4 475,301 + DZA65_RS02175 0.49 -0.4 475,329 + DZA65_RS02175 0.55 -1.5 475,378 + DZA65_RS02175 0.67 +0.7 475,378 + DZA65_RS02175 0.67 -0.5 475,379 - DZA65_RS02175 0.67 -0.4 475,379 - DZA65_RS02175 0.67 +0.3 475,379 - DZA65_RS02175 0.67 -0.3 475,379 - DZA65_RS02175 0.67 -0.3 475,388 + DZA65_RS02175 0.69 +0.2 475,388 + DZA65_RS02175 0.69 -0.5 475,388 + DZA65_RS02175 0.69 -0.5 475,388 + DZA65_RS02175 0.69 -0.8 475,389 - DZA65_RS02175 0.70 -3.0 475,389 - DZA65_RS02175 0.70 +0.8 475,389 - DZA65_RS02175 0.70 -2.1 475,389 - DZA65_RS02175 0.70 +0.3 475,389 - DZA65_RS02175 0.70 -0.5 475,457 + DZA65_RS02175 0.86 -0.7 475,457 + DZA65_RS02175 0.86 +0.1 475,474 + DZA65_RS02175 0.90 -1.8 475,474 + DZA65_RS02175 0.90 -1.3 475,499 + -0.5 475,500 - +1.9 475,500 - +0.2 475,531 - +0.8 475,535 + +2.6 475,536 - -0.6 475,536 - -0.6 475,574 + +0.9 475,574 + +0.9 475,574 + +0.1 475,575 - +0.7 475,575 - -0.9 475,575 - +3.7 475,579 + -2.1 475,580 - +0.8 475,580 - +0.6 475,587 + -1.1 475,732 + DZA65_RS02180 0.24 -0.6 475,751 + DZA65_RS02180 0.26 -0.6 475,751 + DZA65_RS02180 0.26 -0.1 475,761 - DZA65_RS02180 0.27 -1.2 475,770 + DZA65_RS02180 0.29 -1.3 475,771 - DZA65_RS02180 0.29 +0.7 476,251 + DZA65_RS02180 0.85 +2.1 476,282 + DZA65_RS02180 0.89 -0.9 476,282 + DZA65_RS02180 0.89 -0.8 476,376 + +0.3 476,423 - +0.1 476,426 + -0.9 476,427 - +0.1 476,463 - DZA65_RS02185 0.17 -0.8 476,463 - DZA65_RS02185 0.17 +0.1 476,463 - DZA65_RS02185 0.17 -0.2 476,463 - DZA65_RS02185 0.17 +0.4 476,463 - DZA65_RS02185 0.17 -0.2 476,463 - DZA65_RS02185 0.17 +0.6 476,463 - DZA65_RS02185 0.17 -0.5 476,463 - DZA65_RS02185 0.17 +1.7 476,463 - DZA65_RS02185 0.17 +0.1 476,463 - DZA65_RS02185 0.17 +0.6 476,463 - DZA65_RS02185 0.17 +0.7 476,463 - DZA65_RS02185 0.17 -0.0 476,463 - DZA65_RS02185 0.17 -0.7 476,463 - DZA65_RS02185 0.17 -2.4 476,463 - DZA65_RS02185 0.17 +0.7
Or see this region's nucleotide sequence