Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01330 and DZA65_RS22775 are separated by 417 nucleotides DZA65_RS22775 and DZA65_RS01340 are separated by 186 nucleotides DZA65_RS01340 and DZA65_RS01345 overlap by 8 nucleotides DZA65_RS01345 and DZA65_RS01350 are separated by 138 nucleotides DZA65_RS01350 and DZA65_RS01355 are separated by 23 nucleotides
DZA65_RS01330: DZA65_RS01330 - hypothetical protein, at 296,670 to 297,041
_RS01330
DZA65_RS22775: DZA65_RS22775 - hypothetical protein, at 297,459 to 297,644
_RS22775
DZA65_RS01340: DZA65_RS01340 - host cell division inhibitor Icd-like protein, at 297,831 to 298,019
_RS01340
DZA65_RS01345: DZA65_RS01345 - hypothetical protein, at 298,012 to 298,203
_RS01345
DZA65_RS01350: DZA65_RS01350 - DNA-binding transcriptional regulator Fis, at 298,342 to 298,638
_RS01350
DZA65_RS01355: DZA65_RS01355 - tRNA dihydrouridine synthase DusB, at 298,662 to 299,627
_RS01355
Position (kb) 297
298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 296.841 kb on - strand, within DZA65_RS01330 at 296.841 kb on - strand, within DZA65_RS01330 at 296.841 kb on - strand, within DZA65_RS01330 at 296.841 kb on - strand, within DZA65_RS01330 at 296.841 kb on - strand, within DZA65_RS01330 at 296.850 kb on - strand, within DZA65_RS01330 at 296.850 kb on - strand, within DZA65_RS01330 at 296.850 kb on - strand, within DZA65_RS01330 at 296.850 kb on - strand, within DZA65_RS01330 at 296.850 kb on - strand, within DZA65_RS01330 at 296.851 kb on + strand, within DZA65_RS01330 at 296.852 kb on - strand, within DZA65_RS01330 at 296.892 kb on - strand, within DZA65_RS01330 at 296.938 kb on - strand, within DZA65_RS01330 at 296.949 kb on - strand, within DZA65_RS01330 at 296.979 kb on - strand, within DZA65_RS01330 at 296.991 kb on - strand, within DZA65_RS01330 at 297.062 kb on + strand at 297.063 kb on - strand at 297.066 kb on - strand at 297.074 kb on + strand at 297.075 kb on - strand at 297.076 kb on + strand at 297.076 kb on + strand at 297.079 kb on + strand at 297.158 kb on + strand at 297.159 kb on - strand at 297.165 kb on - strand at 297.165 kb on - strand at 297.165 kb on - strand at 297.165 kb on - strand at 297.165 kb on - strand at 297.180 kb on - strand at 297.180 kb on - strand at 297.180 kb on - strand at 297.180 kb on - strand at 297.190 kb on + strand at 297.190 kb on + strand at 297.190 kb on + strand at 297.195 kb on + strand at 297.195 kb on + strand at 297.196 kb on - strand at 297.217 kb on - strand at 297.217 kb on - strand at 297.231 kb on + strand at 297.231 kb on + strand at 297.231 kb on + strand at 297.231 kb on + strand at 297.231 kb on + strand at 297.231 kb on + strand at 297.231 kb on + strand at 297.231 kb on + strand at 297.231 kb on + strand at 297.232 kb on - strand at 297.232 kb on - strand at 297.232 kb on - strand at 297.232 kb on - strand at 297.232 kb on - strand at 297.232 kb on - strand at 297.232 kb on - strand at 297.252 kb on + strand at 297.252 kb on + strand at 297.252 kb on + strand at 297.252 kb on + strand at 297.252 kb on + strand at 297.252 kb on + strand at 297.252 kb on + strand at 297.253 kb on - strand at 297.253 kb on - strand at 297.253 kb on - strand at 297.253 kb on - strand at 297.253 kb on - strand at 297.253 kb on - strand at 297.253 kb on - strand at 297.253 kb on - strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.307 kb on + strand at 297.308 kb on - strand at 297.308 kb on - strand at 297.308 kb on - strand at 297.308 kb on - strand at 297.308 kb on - strand at 297.308 kb on - strand at 297.308 kb on - strand at 297.308 kb on - strand at 297.308 kb on - strand at 297.308 kb on - strand at 297.309 kb on + strand at 297.309 kb on + strand at 297.310 kb on - strand at 297.325 kb on + strand at 297.325 kb on + strand at 297.326 kb on - strand at 297.326 kb on - strand at 297.326 kb on - strand at 297.326 kb on - strand at 297.326 kb on - strand at 297.329 kb on + strand at 297.329 kb on + strand at 297.329 kb on + strand at 297.329 kb on + strand at 297.330 kb on - strand at 297.330 kb on - strand at 297.330 kb on - strand at 297.357 kb on + strand at 297.357 kb on + strand at 297.358 kb on - strand at 297.358 kb on - strand at 297.384 kb on + strand at 297.384 kb on + strand at 297.384 kb on + strand at 297.384 kb on + strand at 297.418 kb on + strand at 297.419 kb on - strand at 297.425 kb on + strand at 297.425 kb on + strand at 297.425 kb on + strand at 297.425 kb on + strand at 297.425 kb on + strand at 297.426 kb on - strand at 297.426 kb on - strand at 297.432 kb on + strand at 297.439 kb on + strand at 297.439 kb on + strand at 297.439 kb on + strand at 297.439 kb on + strand at 297.440 kb on - strand at 297.467 kb on + strand at 297.467 kb on + strand at 297.479 kb on + strand, within DZA65_RS22775 at 297.479 kb on + strand, within DZA65_RS22775 at 297.488 kb on + strand, within DZA65_RS22775 at 297.488 kb on + strand, within DZA65_RS22775 at 297.606 kb on + strand, within DZA65_RS22775 at 297.660 kb on + strand at 297.660 kb on + strand at 297.663 kb on + strand at 297.663 kb on + strand at 297.664 kb on - strand at 297.664 kb on - strand at 297.678 kb on - strand at 297.679 kb on + strand at 297.680 kb on - strand at 297.680 kb on - strand at 297.680 kb on - strand at 297.730 kb on - strand at 297.803 kb on + strand at 297.815 kb on + strand at 297.815 kb on + strand at 297.816 kb on - strand at 297.816 kb on - strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.824 kb on + strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.825 kb on - strand at 297.831 kb on - strand at 297.831 kb on - strand at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.917 kb on + strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.918 kb on - strand, within DZA65_RS01340 at 297.920 kb on + strand at 297.920 kb on + strand, within DZA65_RS01340 at 297.920 kb on + strand, within DZA65_RS01340 at 297.920 kb on + strand, within DZA65_RS01340 at 297.927 kb on - strand, within DZA65_RS01340 at 298.031 kb on + strand at 298.032 kb on - strand, within DZA65_RS01345 at 298.072 kb on + strand, within DZA65_RS01345 at 298.072 kb on + strand, within DZA65_RS01345 at 298.115 kb on + strand, within DZA65_RS01345 at 298.139 kb on + strand, within DZA65_RS01345 at 298.139 kb on + strand, within DZA65_RS01345 at 298.139 kb on + strand, within DZA65_RS01345 at 298.140 kb on - strand, within DZA65_RS01345 at 298.140 kb on - strand, within DZA65_RS01345 at 298.140 kb on - strand, within DZA65_RS01345 at 298.143 kb on + strand, within DZA65_RS01345 at 298.143 kb on + strand, within DZA65_RS01345 at 298.143 kb on + strand, within DZA65_RS01345 at 298.144 kb on - strand, within DZA65_RS01345 at 298.262 kb on + strand at 298.262 kb on + strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.263 kb on - strand at 298.267 kb on + strand at 298.268 kb on - strand at 298.341 kb on - strand at 298.341 kb on - strand at 298.487 kb on + strand, within DZA65_RS01350 at 298.487 kb on + strand, within DZA65_RS01350 at 298.487 kb on + strand, within DZA65_RS01350 at 298.488 kb on - strand, within DZA65_RS01350 at 298.488 kb on - strand, within DZA65_RS01350 at 298.638 kb on + strand at 298.638 kb on + strand at 298.639 kb on - strand at 298.663 kb on + strand at 298.720 kb on - strand at 298.720 kb on - strand at 298.771 kb on + strand, within DZA65_RS01355 at 298.787 kb on + strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.788 kb on - strand, within DZA65_RS01355 at 298.797 kb on - strand, within DZA65_RS01355 at 298.820 kb on - strand, within DZA65_RS01355 at 298.820 kb on - strand, within DZA65_RS01355 at 298.820 kb on - strand, within DZA65_RS01355 at 298.839 kb on + strand, within DZA65_RS01355 at 298.840 kb on - strand, within DZA65_RS01355 at 298.842 kb on - strand, within DZA65_RS01355 at 298.842 kb on - strand, within DZA65_RS01355 at 298.842 kb on - strand, within DZA65_RS01355 at 298.909 kb on + strand, within DZA65_RS01355 at 298.909 kb on + strand, within DZA65_RS01355 at 298.910 kb on - strand, within DZA65_RS01355 at 298.910 kb on - strand, within DZA65_RS01355 at 298.984 kb on + strand, within DZA65_RS01355 at 298.985 kb on - strand, within DZA65_RS01355 at 299.019 kb on - strand, within DZA65_RS01355
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 296,841 - DZA65_RS01330 0.46 -1.5 296,841 - DZA65_RS01330 0.46 -1.1 296,841 - DZA65_RS01330 0.46 -0.9 296,841 - DZA65_RS01330 0.46 -1.2 296,841 - DZA65_RS01330 0.46 -1.1 296,850 - DZA65_RS01330 0.48 -1.2 296,850 - DZA65_RS01330 0.48 -0.4 296,850 - DZA65_RS01330 0.48 +1.1 296,850 - DZA65_RS01330 0.48 +0.1 296,850 - DZA65_RS01330 0.48 -0.5 296,851 + DZA65_RS01330 0.49 -1.5 296,852 - DZA65_RS01330 0.49 -1.1 296,892 - DZA65_RS01330 0.60 +1.5 296,938 - DZA65_RS01330 0.72 -0.5 296,949 - DZA65_RS01330 0.75 +1.1 296,979 - DZA65_RS01330 0.83 +0.9 296,991 - DZA65_RS01330 0.86 +1.1 297,062 + -0.3 297,063 - +0.3 297,066 - -0.9 297,074 + -1.1 297,075 - -0.1 297,076 + -0.8 297,076 + -0.6 297,079 + -0.3 297,158 + -0.3 297,159 - -1.7 297,165 - -0.9 297,165 - -0.0 297,165 - -0.3 297,165 - +1.0 297,165 - -0.5 297,180 - +0.3 297,180 - +0.5 297,180 - -0.1 297,180 - +0.1 297,190 + -0.4 297,190 + +0.9 297,190 + -0.5 297,195 + +0.4 297,195 + +1.9 297,196 - +2.5 297,217 - +0.4 297,217 - +0.7 297,231 + -1.9 297,231 + +2.1 297,231 + -0.3 297,231 + +1.7 297,231 + +1.1 297,231 + -0.9 297,231 + +1.2 297,231 + +1.3 297,231 + -1.2 297,232 - +0.0 297,232 - -1.2 297,232 - -0.7 297,232 - -0.2 297,232 - +0.5 297,232 - -0.9 297,232 - +0.4 297,252 + -1.3 297,252 + +1.1 297,252 + -0.5 297,252 + -2.1 297,252 + -2.5 297,252 + -1.2 297,252 + +0.2 297,253 - +1.1 297,253 - -1.7 297,253 - +0.2 297,253 - +0.1 297,253 - +0.7 297,253 - +1.3 297,253 - -0.5 297,253 - -0.3 297,307 + +0.1 297,307 + +0.1 297,307 + -0.7 297,307 + -1.9 297,307 + +0.7 297,307 + -0.7 297,307 + +1.5 297,307 + -1.1 297,307 + +0.7 297,307 + -1.1 297,307 + -0.6 297,307 + +1.3 297,307 + -0.1 297,307 + -0.4 297,307 + -2.6 297,308 - -0.2 297,308 - -0.4 297,308 - -0.2 297,308 - +0.3 297,308 - -1.5 297,308 - -0.9 297,308 - +1.1 297,308 - +1.1 297,308 - -0.4 297,308 - +1.1 297,309 + -1.9 297,309 + -2.1 297,310 - -1.2 297,325 + +1.7 297,325 + +1.6 297,326 - +0.6 297,326 - -0.1 297,326 - +0.1 297,326 - +0.8 297,326 - -1.5 297,329 + -2.6 297,329 + -3.1 297,329 + -1.2 297,329 + +0.3 297,330 - -0.8 297,330 - -0.2 297,330 - +2.1 297,357 + +0.7 297,357 + -0.1 297,358 - +1.7 297,358 - -1.0 297,384 + +0.1 297,384 + +0.1 297,384 + +3.6 297,384 + -0.5 297,418 + +0.3 297,419 - -1.2 297,425 + -0.1 297,425 + +0.7 297,425 + -1.3 297,425 + -0.9 297,425 + +0.2 297,426 - +0.5 297,426 - -0.1 297,432 + +1.1 297,439 + +0.3 297,439 + +3.0 297,439 + +0.1 297,439 + +0.6 297,440 - -0.9 297,467 + -0.5 297,467 + +2.4 297,479 + DZA65_RS22775 0.11 +0.3 297,479 + DZA65_RS22775 0.11 -1.7 297,488 + DZA65_RS22775 0.16 +0.7 297,488 + DZA65_RS22775 0.16 +0.8 297,606 + DZA65_RS22775 0.79 -0.3 297,660 + -0.2 297,660 + -2.5 297,663 + -0.6 297,663 + -0.1 297,664 - -0.6 297,664 - -0.5 297,678 - +0.1 297,679 + +0.6 297,680 - -0.5 297,680 - +0.5 297,680 - -0.5 297,730 - +0.2 297,803 + +0.5 297,815 + -0.9 297,815 + +0.7 297,816 - +0.1 297,816 - +0.5 297,824 + +1.1 297,824 + -1.9 297,824 + +0.3 297,824 + -1.6 297,824 + +0.7 297,824 + -0.7 297,824 + -0.5 297,824 + -0.1 297,825 - +0.3 297,825 - -0.3 297,825 - +1.5 297,825 - -1.1 297,825 - +0.3 297,831 - -0.8 297,831 - +0.1 297,917 + DZA65_RS01340 0.46 -0.8 297,917 + DZA65_RS01340 0.46 +2.5 297,917 + DZA65_RS01340 0.46 -1.1 297,917 + DZA65_RS01340 0.46 -2.1 297,917 + DZA65_RS01340 0.46 -0.2 297,917 + DZA65_RS01340 0.46 -0.9 297,917 + DZA65_RS01340 0.46 -0.8 297,917 + DZA65_RS01340 0.46 -1.9 297,917 + DZA65_RS01340 0.46 -2.4 297,917 + DZA65_RS01340 0.46 -0.1 297,917 + DZA65_RS01340 0.46 -0.4 297,918 - DZA65_RS01340 0.46 +0.1 297,918 - DZA65_RS01340 0.46 -0.0 297,918 - DZA65_RS01340 0.46 +2.6 297,918 - DZA65_RS01340 0.46 -0.9 297,918 - DZA65_RS01340 0.46 -1.4 297,918 - DZA65_RS01340 0.46 +0.4 297,918 - DZA65_RS01340 0.46 -1.5 297,920 + +1.1 297,920 + DZA65_RS01340 0.47 -0.7 297,920 + DZA65_RS01340 0.47 +1.5 297,920 + DZA65_RS01340 0.47 +1.1 297,927 - DZA65_RS01340 0.51 -0.1 298,031 + -0.3 298,032 - DZA65_RS01345 0.10 +1.6 298,072 + DZA65_RS01345 0.31 -0.2 298,072 + DZA65_RS01345 0.31 -0.2 298,115 + DZA65_RS01345 0.54 -0.2 298,139 + DZA65_RS01345 0.66 -0.5 298,139 + DZA65_RS01345 0.66 -0.5 298,139 + DZA65_RS01345 0.66 +0.0 298,140 - DZA65_RS01345 0.67 +2.2 298,140 - DZA65_RS01345 0.67 +0.6 298,140 - DZA65_RS01345 0.67 -0.4 298,143 + DZA65_RS01345 0.68 +0.5 298,143 + DZA65_RS01345 0.68 -0.1 298,143 + DZA65_RS01345 0.68 +1.5 298,144 - DZA65_RS01345 0.69 +0.4 298,262 + +0.9 298,262 + -0.5 298,263 - +1.7 298,263 - +0.3 298,263 - -2.1 298,263 - -0.1 298,263 - -0.2 298,267 + -0.3 298,268 - +0.1 298,341 - +0.4 298,341 - -0.9 298,487 + DZA65_RS01350 0.49 +0.1 298,487 + DZA65_RS01350 0.49 -1.5 298,487 + DZA65_RS01350 0.49 -2.2 298,488 - DZA65_RS01350 0.49 -2.2 298,488 - DZA65_RS01350 0.49 -1.5 298,638 + -0.8 298,638 + +1.1 298,639 - +1.1 298,663 + -0.9 298,720 - +0.6 298,720 - -1.5 298,771 + DZA65_RS01355 0.11 +0.4 298,787 + DZA65_RS01355 0.13 -1.7 298,788 - DZA65_RS01355 0.13 +0.1 298,788 - DZA65_RS01355 0.13 -1.4 298,788 - DZA65_RS01355 0.13 -0.2 298,788 - DZA65_RS01355 0.13 -0.5 298,788 - DZA65_RS01355 0.13 +0.8 298,788 - DZA65_RS01355 0.13 +0.1 298,788 - DZA65_RS01355 0.13 +0.1 298,788 - DZA65_RS01355 0.13 +1.1 298,788 - DZA65_RS01355 0.13 -2.2 298,797 - DZA65_RS01355 0.14 -2.8 298,820 - DZA65_RS01355 0.16 -0.5 298,820 - DZA65_RS01355 0.16 -0.5 298,820 - DZA65_RS01355 0.16 +0.6 298,839 + DZA65_RS01355 0.18 -1.7 298,840 - DZA65_RS01355 0.18 -1.2 298,842 - DZA65_RS01355 0.19 +1.1 298,842 - DZA65_RS01355 0.19 +1.1 298,842 - DZA65_RS01355 0.19 +0.1 298,909 + DZA65_RS01355 0.26 -0.5 298,909 + DZA65_RS01355 0.26 -0.9 298,910 - DZA65_RS01355 0.26 -0.7 298,910 - DZA65_RS01355 0.26 -0.5 298,984 + DZA65_RS01355 0.33 -0.5 298,985 - DZA65_RS01355 0.33 +0.5 299,019 - DZA65_RS01355 0.37 -2.2
Or see this region's nucleotide sequence