Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00615 and DZA65_RS00620 are separated by 235 nucleotides DZA65_RS00620 and DZA65_RS00625 are separated by 588 nucleotides
DZA65_RS00615: DZA65_RS00615 - serine hydrolase, at 141,776 to 143,287
_RS00615
DZA65_RS00620: DZA65_RS00620 - FkbM family methyltransferase, at 143,523 to 144,584
_RS00620
DZA65_RS00625: DZA65_RS00625 - acyltransferase, at 145,173 to 146,162
_RS00625
Position (kb) 143
144
145 Strain fitness (log2 ratio) -2
-1
0
1
2 at 142.665 kb on - strand, within DZA65_RS00615 at 142.673 kb on + strand, within DZA65_RS00615 at 142.673 kb on + strand, within DZA65_RS00615 at 142.673 kb on + strand, within DZA65_RS00615 at 142.673 kb on + strand, within DZA65_RS00615 at 142.673 kb on + strand, within DZA65_RS00615 at 142.674 kb on - strand, within DZA65_RS00615 at 142.674 kb on - strand, within DZA65_RS00615 at 142.674 kb on - strand, within DZA65_RS00615 at 142.674 kb on - strand, within DZA65_RS00615 at 142.742 kb on + strand, within DZA65_RS00615 at 142.742 kb on + strand, within DZA65_RS00615 at 142.742 kb on + strand, within DZA65_RS00615 at 142.742 kb on + strand, within DZA65_RS00615 at 142.742 kb on + strand, within DZA65_RS00615 at 142.742 kb on + strand, within DZA65_RS00615 at 142.742 kb on + strand, within DZA65_RS00615 at 142.743 kb on - strand, within DZA65_RS00615 at 142.743 kb on - strand, within DZA65_RS00615 at 142.743 kb on - strand, within DZA65_RS00615 at 142.743 kb on - strand, within DZA65_RS00615 at 142.743 kb on - strand, within DZA65_RS00615 at 142.823 kb on + strand, within DZA65_RS00615 at 142.824 kb on - strand, within DZA65_RS00615 at 142.824 kb on - strand, within DZA65_RS00615 at 142.901 kb on + strand, within DZA65_RS00615 at 142.960 kb on + strand, within DZA65_RS00615 at 142.960 kb on + strand, within DZA65_RS00615 at 142.961 kb on - strand, within DZA65_RS00615 at 143.252 kb on - strand at 143.344 kb on + strand at 143.357 kb on - strand at 143.357 kb on - strand at 143.357 kb on - strand at 143.357 kb on - strand at 143.463 kb on - strand at 143.520 kb on + strand at 143.521 kb on - strand at 143.584 kb on + strand at 143.620 kb on + strand at 143.707 kb on + strand, within DZA65_RS00620 at 143.794 kb on - strand, within DZA65_RS00620 at 143.799 kb on + strand, within DZA65_RS00620 at 143.832 kb on + strand, within DZA65_RS00620 at 143.852 kb on + strand, within DZA65_RS00620 at 143.924 kb on + strand, within DZA65_RS00620 at 143.964 kb on - strand, within DZA65_RS00620 at 143.964 kb on - strand, within DZA65_RS00620 at 144.112 kb on + strand, within DZA65_RS00620 at 144.113 kb on - strand, within DZA65_RS00620 at 144.113 kb on - strand, within DZA65_RS00620 at 144.113 kb on - strand, within DZA65_RS00620 at 144.114 kb on + strand, within DZA65_RS00620 at 144.114 kb on + strand, within DZA65_RS00620 at 144.114 kb on + strand, within DZA65_RS00620 at 144.115 kb on - strand, within DZA65_RS00620 at 144.149 kb on + strand, within DZA65_RS00620 at 144.193 kb on - strand, within DZA65_RS00620 at 144.228 kb on + strand, within DZA65_RS00620 at 144.261 kb on + strand, within DZA65_RS00620 at 144.262 kb on - strand, within DZA65_RS00620 at 144.463 kb on - strand, within DZA65_RS00620 at 144.480 kb on - strand at 144.525 kb on + strand at 144.617 kb on + strand at 144.623 kb on - strand at 144.648 kb on + strand at 144.649 kb on - strand at 144.650 kb on + strand at 144.654 kb on + strand at 144.664 kb on + strand at 144.665 kb on - strand at 144.734 kb on + strand at 144.734 kb on + strand at 144.734 kb on + strand at 144.734 kb on + strand at 144.734 kb on + strand at 144.735 kb on - strand at 144.735 kb on - strand at 144.738 kb on + strand at 144.738 kb on + strand at 144.739 kb on - strand at 144.739 kb on - strand at 144.739 kb on - strand at 144.744 kb on + strand at 144.760 kb on - strand at 144.762 kb on + strand at 144.763 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.779 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.781 kb on - strand at 144.783 kb on - strand at 144.807 kb on + strand at 144.839 kb on + strand at 144.839 kb on + strand at 144.839 kb on + strand at 144.839 kb on + strand at 144.839 kb on + strand at 144.847 kb on + strand at 144.847 kb on + strand at 144.847 kb on + strand at 144.869 kb on + strand at 144.870 kb on - strand at 144.889 kb on - strand at 144.941 kb on + strand at 144.947 kb on - strand at 144.947 kb on - strand at 144.948 kb on + strand at 144.948 kb on + strand at 144.948 kb on + strand at 144.948 kb on + strand at 144.949 kb on - strand at 144.952 kb on + strand at 144.959 kb on - strand at 145.067 kb on + strand at 145.068 kb on - strand at 145.167 kb on - strand at 145.317 kb on + strand, within DZA65_RS00625 at 145.327 kb on - strand, within DZA65_RS00625 at 145.341 kb on + strand, within DZA65_RS00625 at 145.348 kb on - strand, within DZA65_RS00625 at 145.348 kb on - strand, within DZA65_RS00625 at 145.387 kb on - strand, within DZA65_RS00625 at 145.446 kb on + strand, within DZA65_RS00625 at 145.567 kb on - strand, within DZA65_RS00625 at 145.567 kb on - strand, within DZA65_RS00625
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 142,665 - DZA65_RS00615 0.59 -0.2 142,673 + DZA65_RS00615 0.59 +0.1 142,673 + DZA65_RS00615 0.59 -0.5 142,673 + DZA65_RS00615 0.59 +1.7 142,673 + DZA65_RS00615 0.59 -0.3 142,673 + DZA65_RS00615 0.59 -0.5 142,674 - DZA65_RS00615 0.59 +0.5 142,674 - DZA65_RS00615 0.59 +0.9 142,674 - DZA65_RS00615 0.59 -1.4 142,674 - DZA65_RS00615 0.59 -1.0 142,742 + DZA65_RS00615 0.64 -0.6 142,742 + DZA65_RS00615 0.64 +0.3 142,742 + DZA65_RS00615 0.64 +1.9 142,742 + DZA65_RS00615 0.64 -0.6 142,742 + DZA65_RS00615 0.64 -1.5 142,742 + DZA65_RS00615 0.64 -2.3 142,742 + DZA65_RS00615 0.64 +0.4 142,743 - DZA65_RS00615 0.64 -0.6 142,743 - DZA65_RS00615 0.64 -0.7 142,743 - DZA65_RS00615 0.64 -0.0 142,743 - DZA65_RS00615 0.64 -1.2 142,743 - DZA65_RS00615 0.64 +0.8 142,823 + DZA65_RS00615 0.69 +0.1 142,824 - DZA65_RS00615 0.69 +0.6 142,824 - DZA65_RS00615 0.69 +0.4 142,901 + DZA65_RS00615 0.74 -0.2 142,960 + DZA65_RS00615 0.78 -1.7 142,960 + DZA65_RS00615 0.78 +0.9 142,961 - DZA65_RS00615 0.78 -0.9 143,252 - +0.1 143,344 + +0.5 143,357 - -0.3 143,357 - -0.4 143,357 - -0.5 143,357 - +0.6 143,463 - +0.5 143,520 + -0.1 143,521 - +0.0 143,584 + -2.5 143,620 + +2.6 143,707 + DZA65_RS00620 0.17 +0.1 143,794 - DZA65_RS00620 0.26 +0.4 143,799 + DZA65_RS00620 0.26 +2.6 143,832 + DZA65_RS00620 0.29 +0.5 143,852 + DZA65_RS00620 0.31 +0.1 143,924 + DZA65_RS00620 0.38 -0.2 143,964 - DZA65_RS00620 0.42 +0.4 143,964 - DZA65_RS00620 0.42 -2.5 144,112 + DZA65_RS00620 0.55 +0.9 144,113 - DZA65_RS00620 0.56 -0.2 144,113 - DZA65_RS00620 0.56 -0.5 144,113 - DZA65_RS00620 0.56 +0.5 144,114 + DZA65_RS00620 0.56 +0.7 144,114 + DZA65_RS00620 0.56 +0.4 144,114 + DZA65_RS00620 0.56 -1.5 144,115 - DZA65_RS00620 0.56 +0.2 144,149 + DZA65_RS00620 0.59 +2.6 144,193 - DZA65_RS00620 0.63 +0.2 144,228 + DZA65_RS00620 0.66 +1.7 144,261 + DZA65_RS00620 0.69 -2.3 144,262 - DZA65_RS00620 0.70 -0.3 144,463 - DZA65_RS00620 0.89 -0.7 144,480 - -0.1 144,525 + -0.5 144,617 + -0.0 144,623 - -0.2 144,648 + -0.3 144,649 - -0.7 144,650 + +0.3 144,654 + +1.1 144,664 + +0.1 144,665 - -0.3 144,734 + -1.5 144,734 + +0.3 144,734 + +0.5 144,734 + +1.5 144,734 + +0.3 144,735 - +1.1 144,735 - -0.9 144,738 + -0.3 144,738 + +0.6 144,739 - -0.8 144,739 - -1.2 144,739 - -1.5 144,744 + -0.6 144,760 - -0.2 144,762 + -2.2 144,763 - +0.2 144,779 - +0.1 144,779 - +0.9 144,779 - -0.9 144,779 - -2.0 144,779 - -0.8 144,779 - +0.1 144,779 - +2.1 144,779 - -0.7 144,781 - -1.7 144,781 - -0.5 144,781 - -0.7 144,781 - -0.2 144,781 - +0.4 144,781 - -0.5 144,781 - -2.0 144,781 - -1.2 144,781 - -1.5 144,781 - +0.9 144,781 - +0.1 144,781 - -0.1 144,783 - +0.3 144,807 + +0.5 144,839 + +0.8 144,839 + -0.5 144,839 + +0.2 144,839 + +0.1 144,839 + -1.2 144,847 + +0.6 144,847 + +1.0 144,847 + +0.2 144,869 + +2.3 144,870 - -0.9 144,889 - -1.8 144,941 + +0.1 144,947 - +1.5 144,947 - +0.8 144,948 + +0.9 144,948 + +0.3 144,948 + -0.2 144,948 + -0.7 144,949 - +0.3 144,952 + -2.2 144,959 - +1.0 145,067 + +1.5 145,068 - -1.3 145,167 - -0.7 145,317 + DZA65_RS00625 0.15 -0.9 145,327 - DZA65_RS00625 0.16 -1.2 145,341 + DZA65_RS00625 0.17 +2.3 145,348 - DZA65_RS00625 0.18 -0.9 145,348 - DZA65_RS00625 0.18 +0.4 145,387 - DZA65_RS00625 0.22 -0.6 145,446 + DZA65_RS00625 0.28 -0.3 145,567 - DZA65_RS00625 0.40 +0.1 145,567 - DZA65_RS00625 0.40 -1.3
Or see this region's nucleotide sequence