Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00445

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Upstate
				remove
106,812	-			+0.5
106,862	+			-1.0
106,862	+			-0.1
106,862	+			-0.1
106,862	+			+0.9
106,862	+			-1.5
106,862	+			-0.9
106,863	-			+1.1
106,863	-			-0.2
106,863	-			+0.7
106,863	-			-1.5
106,863	-			+0.7
106,863	-			-2.7
106,863	-			+1.7
106,863	-			+0.3
106,863	-			-0.4
106,863	-			-2.0
106,863	-			-0.8
106,863	-			+0.1
106,866	+			-0.0
106,866	+			+1.6
106,866	+			-1.6
106,866	+			-2.2
106,866	+			-0.5
106,866	+			-0.1
106,867	-			-0.7
106,867	-			-0.3
106,867	-			+1.1
106,879	-			+1.1
106,879	-			+0.1
106,893	-			+0.4
106,968	+	DZA65_RS00440	0.19	-1.0
106,981	-	DZA65_RS00440	0.21	+1.1
107,192	+	DZA65_RS00440	0.53	+2.0
107,193	-	DZA65_RS00440	0.53	+0.8
107,193	-	DZA65_RS00440	0.53	+1.5
107,195	+	DZA65_RS00440	0.54	-0.5
107,195	+	DZA65_RS00440	0.54	+1.1
107,196	-	DZA65_RS00440	0.54	+2.5
107,210	+	DZA65_RS00440	0.56	-0.5
107,274	+	DZA65_RS00440	0.66	-1.9
107,309	+	DZA65_RS00440	0.71	+0.1
107,309	+	DZA65_RS00440	0.71	+0.9
107,310	-	DZA65_RS00440	0.71	-0.1
107,403	-	DZA65_RS00440	0.86	-0.2
107,403	-	DZA65_RS00440	0.86	+0.3
107,546	+			-0.2
107,546	+			+1.1
107,547	-			+0.3
107,573	+			-2.3
107,574	-			+1.0
107,636	+			+0.2
107,636	+			+0.5
107,636	+			+1.3
107,637	-			+0.8
107,637	-			+0.1
107,637	-			-0.2
107,637	-			+0.7
107,637	-			-1.2
107,637	-			-1.0
107,637	-			-0.5
107,637	-			-0.2
107,637	-			+0.9
107,637	-			+0.1
107,688	+			+0.6
107,688	+			+0.7
107,688	+			-0.0
107,689	-			+0.5
107,689	-			+1.1
107,689	-			+1.0
107,689	-			-0.9
107,689	-			+1.4
107,689	-			-0.9
107,689	-			+0.5
107,689	-			+0.4
107,691	+			-0.5
107,691	+			-0.2
107,691	+			+1.9
107,691	+			+0.2
107,691	+			+0.6
107,691	+			+1.5
107,691	+			-0.1
107,691	+			+1.0
107,691	+			-0.6
107,691	+			+1.5
107,691	+			+2.1
107,691	+			+0.9
107,691	+			+2.9
107,691	+			-0.5
107,691	+			+0.7
107,692	-			-0.0
107,692	-			-0.5
107,692	-			-1.0
107,692	-			+0.8
107,692	-			-0.2
107,692	-			-1.5
107,692	-			-1.3
107,692	-			+0.5
107,692	-			-0.9
107,692	-			-1.6
107,692	-			-2.0
107,692	-			+0.2
107,692	-			+0.9
107,697	+			-1.3
107,697	+			+0.1
107,698	-			+0.1
107,698	-			-1.2
107,702	+			+1.1
107,702	+			+1.0
107,702	+			-1.9
107,702	+			+1.7
107,702	+			-0.9
107,702	+			+0.9
107,702	+			+0.7
107,702	+			-0.4
107,702	+			+1.1
107,702	+			+2.1
107,703	-			+0.5
107,703	-			-0.3
107,703	-			-0.2
107,703	-			+0.1
107,703	-			+1.5
107,703	-			-0.6
107,703	-			+1.7
107,703	-			-1.5
107,703	-			+0.1
107,703	-			-0.3
107,703	-			-1.5
107,703	-			+0.1
107,703	-			-0.2
107,703	-			-2.6
107,703	-			-1.7
107,706	+			-0.6
107,742	-			-0.4
107,752	-			+0.3
107,755	+			-0.2
107,755	+			-0.3
107,755	+			-2.0
107,755	+			+0.5
107,755	+			-1.2
107,755	+			-0.3
107,756	-			-1.5
107,756	-			+0.8
107,914	+	DZA65_RS00445	0.14	+0.8
107,914	+	DZA65_RS00445	0.14	+1.5
107,914	+	DZA65_RS00445	0.14	-1.5
107,915	-	DZA65_RS00445	0.15	+0.1
107,915	-	DZA65_RS00445	0.15	-0.1
107,983	+	DZA65_RS00445	0.22	+0.3
107,984	-	DZA65_RS00445	0.22	+0.2
107,984	-	DZA65_RS00445	0.22	-0.2
107,997	+	DZA65_RS00445	0.23	-0.5
108,018	+	DZA65_RS00445	0.26	-0.5
108,019	-	DZA65_RS00445	0.26	-0.9
108,053	+	DZA65_RS00445	0.29	+0.2
108,054	-	DZA65_RS00445	0.29	-1.7
108,054	-	DZA65_RS00445	0.29	-1.0
108,060	+	DZA65_RS00445	0.30	-1.7
108,061	-	DZA65_RS00445	0.30	+0.6
108,061	-	DZA65_RS00445	0.30	-0.5
108,061	-	DZA65_RS00445	0.30	-0.2
108,094	+	DZA65_RS00445	0.34	+0.4
108,094	+	DZA65_RS00445	0.34	-0.9
108,094	+	DZA65_RS00445	0.34	-2.2
108,095	-	DZA65_RS00445	0.34	-0.3
108,095	-	DZA65_RS00445	0.34	+0.3
108,095	-	DZA65_RS00445	0.34	-0.3
108,159	-	DZA65_RS00445	0.41	+0.1
108,160	+	DZA65_RS00445	0.41	+2.1
108,160	+	DZA65_RS00445	0.41	+2.1
108,160	+	DZA65_RS00445	0.41	-1.5
108,160	+	DZA65_RS00445	0.41	-0.3
108,160	+	DZA65_RS00445	0.41	+1.5
108,160	+	DZA65_RS00445	0.41	+1.1
108,160	+	DZA65_RS00445	0.41	-0.7
108,160	+	DZA65_RS00445	0.41	-1.5
108,161	-	DZA65_RS00445	0.41	-0.2
108,161	-	DZA65_RS00445	0.41	-0.7
108,161	-	DZA65_RS00445	0.41	+2.4
108,171	+	DZA65_RS00445	0.42	-0.9
108,171	+	DZA65_RS00445	0.42	+0.4
108,171	+	DZA65_RS00445	0.42	-0.5
108,171	+	DZA65_RS00445	0.42	-2.7
108,171	+	DZA65_RS00445	0.42	-0.0
108,171	+	DZA65_RS00445	0.42	-1.5
108,171	+	DZA65_RS00445	0.42	-0.6
108,172	-	DZA65_RS00445	0.42	-0.3
108,172	-	DZA65_RS00445	0.42	+0.3
108,172	-	DZA65_RS00445	0.42	-0.1
108,172	-	DZA65_RS00445	0.42	+0.1
108,172	-	DZA65_RS00445	0.42	+2.9
108,172	-	DZA65_RS00445	0.42	+0.2
108,172	-	DZA65_RS00445	0.42	+0.9
108,172	-	DZA65_RS00445	0.42	-0.2
108,201	+	DZA65_RS00445	0.45	+0.7
108,233	+	DZA65_RS00445	0.48	+0.3
108,233	+	DZA65_RS00445	0.48	-1.7
108,234	-	DZA65_RS00445	0.49	+1.4
108,234	-	DZA65_RS00445	0.49	+0.1
108,234	-	DZA65_RS00445	0.49	+0.6
108,247	+	DZA65_RS00445	0.50	-0.9
108,248	-	DZA65_RS00445	0.50	+2.5
108,248	-	DZA65_RS00445	0.50	+0.6
108,278	+	DZA65_RS00445	0.53	-0.2
108,278	+			+1.1
108,354	+	DZA65_RS00445	0.61	-0.1
108,355	-	DZA65_RS00445	0.61	+0.0
108,355	-	DZA65_RS00445	0.61	-0.2
108,385	+	DZA65_RS00445	0.65	-1.3
108,385	+	DZA65_RS00445	0.65	+0.7
108,385	+	DZA65_RS00445	0.65	-2.2
108,386	-	DZA65_RS00445	0.65	-0.7
108,408	-	DZA65_RS00445	0.67	+0.6
108,481	+	DZA65_RS00445	0.75	+0.8
108,481	+	DZA65_RS00445	0.75	+1.1
108,481	+	DZA65_RS00445	0.75	-0.5
108,481	+	DZA65_RS00445	0.75	-0.4
108,481	+	DZA65_RS00445	0.75	-0.1
108,481	+	DZA65_RS00445	0.75	+1.7
108,482	-	DZA65_RS00445	0.75	-0.9
108,482	-			-0.5
108,482	-	DZA65_RS00445	0.75	+0.1
108,482	-	DZA65_RS00445	0.75	+0.3
108,482	-	DZA65_RS00445	0.75	+1.0
108,485	+	DZA65_RS00445	0.75	+0.5
108,485	+	DZA65_RS00445	0.75	+1.5
108,485	+	DZA65_RS00445	0.75	+0.8
108,485	+	DZA65_RS00445	0.75	-0.4
108,485	+	DZA65_RS00445	0.75	+0.5
108,486	-	DZA65_RS00445	0.75	-0.0
108,486	-	DZA65_RS00445	0.75	+0.4
108,486	-	DZA65_RS00445	0.75	+0.8
108,486	-	DZA65_RS00445	0.75	+0.3
108,486	-	DZA65_RS00445	0.75	+0.6
108,486	-	DZA65_RS00445	0.75	-1.0
108,486	-	DZA65_RS00445	0.75	-1.7
108,486	-	DZA65_RS00445	0.75	+1.1
108,486	-	DZA65_RS00445	0.75	-2.1
108,528	+	DZA65_RS00445	0.80	+0.3
108,528	+	DZA65_RS00445	0.80	+0.8
108,528	+	DZA65_RS00445	0.80	-1.5
108,528	+	DZA65_RS00445	0.80	-1.0
108,529	-	DZA65_RS00445	0.80	+0.1
108,529	-	DZA65_RS00445	0.80	+0.3
108,529	-	DZA65_RS00445	0.80	+0.4
108,656	+			+0.5
108,657	-			+0.2
108,657	-			+0.0
108,720	+			+1.3
108,720	+			-1.7
108,721	-			-0.7
108,721	-			+0.1
108,721	-			+1.7
108,756	-			+0.3
108,756	-			+1.9
108,774	-			-0.5
108,774	-			+1.5
108,774	-			-0.5
108,816	-			-0.1
108,833	+			+1.9
108,833	+			-0.1
108,965	-	DZA65_RS00450	0.24	+2.5
108,997	+	DZA65_RS00450	0.28	-1.0
108,997	+	DZA65_RS00450	0.28	-0.0
108,997	+	DZA65_RS00450	0.28	+0.7
108,997	+	DZA65_RS00450	0.28	-0.2
108,997	+	DZA65_RS00450	0.28	-0.6
108,998	-	DZA65_RS00450	0.28	+0.8
108,998	-	DZA65_RS00450	0.28	-1.6
108,998	-	DZA65_RS00450	0.28	-0.5
108,998	-	DZA65_RS00450	0.28	-0.0
108,998	-	DZA65_RS00450	0.28	+0.8
108,998	-	DZA65_RS00450	0.28	+0.3
108,998	-	DZA65_RS00450	0.28	+0.1
108,998	-	DZA65_RS00450	0.28	-0.3
109,146	-	DZA65_RS00450	0.47	+0.5
109,304	+	DZA65_RS00450	0.67	+1.4
109,304	+	DZA65_RS00450	0.67	+1.5
109,304	+	DZA65_RS00450	0.67	-0.7
109,304	+	DZA65_RS00450	0.67	-0.4
109,304	+	DZA65_RS00450	0.67	+0.4
109,304	+	DZA65_RS00450	0.67	+0.1
109,304	+	DZA65_RS00450	0.67	+2.1
109,304	+	DZA65_RS00450	0.67	+0.8
109,304	+	DZA65_RS00450	0.67	+0.1
109,304	+	DZA65_RS00450	0.67	+0.1
109,304	+	DZA65_RS00450	0.67	+0.1
109,304	+	DZA65_RS00450	0.67	+1.1
109,305	-	DZA65_RS00450	0.67	+0.3
109,305	-	DZA65_RS00450	0.67	+0.9
109,305	-	DZA65_RS00450	0.67	+0.1
109,305	-	DZA65_RS00450	0.67	-0.9
109,305	-	DZA65_RS00450	0.67	-1.1
109,305	-	DZA65_RS00450	0.67	+1.9
109,305	-	DZA65_RS00450	0.67	+0.7
109,305	-	DZA65_RS00450	0.67	+0.9
109,305	-	DZA65_RS00450	0.67	-0.9
109,305	-	DZA65_RS00450	0.67	-0.1
109,305	-	DZA65_RS00450	0.67	-0.3
109,305	-	DZA65_RS00450	0.67	-2.3
109,305	-	DZA65_RS00450	0.67	+0.1
109,305	-	DZA65_RS00450	0.67	+1.6
109,520	+			+0.7
109,520	+			-0.8
109,520	+			-0.9
109,520	+			-0.5
109,521	-			-0.9
109,521	-			+0.2
109,521	-			-0.7
109,532	+			-0.5
109,533	-			+1.1
109,533	-			+0.6
109,533	-			-1.2
109,533	-			+1.5
109,535	+			+2.5
109,535	+			+1.9
109,535	+			-1.9
109,535	+			-0.2
109,536	-			-0.7
109,536	-			-0.6
109,536	-			+0.9
109,536	-			-0.0
109,600	+			+0.4
109,600	+			-2.5
109,601	-			+0.5
109,619	+			+0.8
109,619	+			+0.0
109,619	+			-0.2
109,619	+			+1.1
109,619	+			+0.4
109,619	+			-0.2
109,619	+			-1.7
109,619	+			-0.7
109,619	+			-1.2
109,619	+			+0.3
109,619	+			-0.9
109,619	+			+1.9
109,619	+			+0.1
109,619	+			+0.5
109,620	-			-0.4
109,620	-			-1.2
109,620	-			-1.7
109,620	-			+0.1
109,620	-			+0.1
109,620	-			+0.8
109,620	-			-0.7
109,620	-			+0.3
109,620	-			+0.5
109,620	-			+1.7
109,650	+			-0.7
109,650	+			-1.9
109,650	+			+0.6
109,651	-			-0.5
109,651	-			+1.1
109,651	-			-1.3
109,698	+			+3.3
109,698	+			+0.4
109,698	+			-0.6
109,698	+			-1.0
109,698	+			-1.7
109,698	+			+1.0
109,698	+			+1.2
109,698	+			-0.0
109,699	-			-0.5
109,699	-			-1.3
109,699	-			-0.9

Or see this region's nucleotide sequence