Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00440

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
105,932	+		DZA65_RS00430	0.85	-0.0
105,942	-		DZA65_RS00430	0.85	+0.5
105,993	+		DZA65_RS00430	0.89	-0.2
105,993	+		DZA65_RS00430	0.89	+0.1
105,994	-		DZA65_RS00430	0.89	+0.4
105,994	-		DZA65_RS00430	0.89	-1.7
105,994	-		DZA65_RS00430	0.89	-0.5
105,994	-		DZA65_RS00430	0.89	+0.7
105,994	-		DZA65_RS00430	0.89	+2.6
105,995	+		DZA65_RS00430	0.89	-0.3
105,995	+		DZA65_RS00430	0.89	+2.0
105,995	+		DZA65_RS00430	0.89	-0.5
105,996	-		DZA65_RS00430	0.90	+0.9
105,996	-		DZA65_RS00430	0.90	+0.1
105,996	-		DZA65_RS00430	0.90	+1.6
105,996	-		DZA65_RS00430	0.90	+0.5
105,996	-		DZA65_RS00430	0.90	-0.9
105,996	-		DZA65_RS00430	0.90	+0.5
106,112	+				-0.0
106,112	+				+0.2
106,112	+				+1.0
106,112	+				+0.9
106,329	-		DZA65_RS00435	0.31	-2.5
106,329	-		DZA65_RS00435	0.31	-0.7
106,329	-		DZA65_RS00435	0.31	-0.1
106,365	-		DZA65_RS00435	0.36	-2.5
106,402	-		DZA65_RS00435	0.40	-2.1
106,445	+		DZA65_RS00435	0.46	-0.7
106,485	+		DZA65_RS00435	0.51	+0.7
106,485	+		DZA65_RS00435	0.51	-1.9
106,486	-		DZA65_RS00435	0.51	-0.4
106,535	+		DZA65_RS00435	0.58	-0.2
106,535	+		DZA65_RS00435	0.58	+0.3
106,600	+		DZA65_RS00435	0.66	+0.6
106,600	+		DZA65_RS00435	0.66	+0.1
106,600	+		DZA65_RS00435	0.66	-0.6
106,600	+		DZA65_RS00435	0.66	+0.6
106,600	+		DZA65_RS00435	0.66	-1.0
106,600	+		DZA65_RS00435	0.66	-0.9
106,600	+		DZA65_RS00435	0.66	-0.2
106,600	+		DZA65_RS00435	0.66	+1.1
106,600	+		DZA65_RS00435	0.66	-0.2
106,600	+		DZA65_RS00435	0.66	+1.1
106,600	+		DZA65_RS00435	0.66	-1.2
106,600	+		DZA65_RS00435	0.66	-0.5
106,600	+		DZA65_RS00435	0.66	+0.1
106,600	+		DZA65_RS00435	0.66	-1.5
106,600	+		DZA65_RS00435	0.66	-0.9
106,601	-		DZA65_RS00435	0.66	-0.0
106,601	-				-0.2
106,601	-		DZA65_RS00435	0.66	-0.7
106,601	-		DZA65_RS00435	0.66	+0.4
106,601	-		DZA65_RS00435	0.66	+0.9
106,601	-		DZA65_RS00435	0.66	+0.1
106,601	-		DZA65_RS00435	0.66	-0.1
106,601	-		DZA65_RS00435	0.66	-1.9
106,601	-		DZA65_RS00435	0.66	+0.8
106,601	-		DZA65_RS00435	0.66	+0.4
106,601	-		DZA65_RS00435	0.66	+0.5
106,601	-		DZA65_RS00435	0.66	-0.0
106,601	-		DZA65_RS00435	0.66	-0.2
106,601	-		DZA65_RS00435	0.66	-0.9
106,601	-		DZA65_RS00435	0.66	+1.1
106,601	-		DZA65_RS00435	0.66	+0.3
106,601	-		DZA65_RS00435	0.66	-0.9
106,601	-		DZA65_RS00435	0.66	+1.1
106,601	-		DZA65_RS00435	0.66	+0.5
106,601	-		DZA65_RS00435	0.66	+0.9
106,602	+		DZA65_RS00435	0.66	+0.8
106,602	+		DZA65_RS00435	0.66	-0.9
106,602	+		DZA65_RS00435	0.66	-1.1
106,602	+		DZA65_RS00435	0.66	-2.0
106,602	+		DZA65_RS00435	0.66	+0.0
106,602	+		DZA65_RS00435	0.66	-0.5
106,603	-		DZA65_RS00435	0.67	-1.1
106,731	+		DZA65_RS00435	0.83	-0.7
106,759	+		DZA65_RS00435	0.87	-0.6
106,760	-		DZA65_RS00435	0.87	+0.8
106,760	-		DZA65_RS00435	0.87	-2.0
106,760	-		DZA65_RS00435	0.87	+1.5
106,760	-		DZA65_RS00435	0.87	+0.0
106,812	-				+0.5
106,862	+				-1.0
106,862	+				-0.1
106,862	+				-0.1
106,862	+				+0.9
106,862	+				-1.5
106,862	+				-0.9
106,863	-				+1.1
106,863	-				-0.2
106,863	-				+0.7
106,863	-				-1.5
106,863	-				+0.7
106,863	-				-2.7
106,863	-				+1.7
106,863	-				+0.3
106,863	-				-0.4
106,863	-				-2.0
106,863	-				-0.8
106,863	-				+0.1
106,866	+				-0.0
106,866	+				+1.6
106,866	+				-1.6
106,866	+				-2.2
106,866	+				-0.5
106,866	+				-0.1
106,867	-				-0.7
106,867	-				-0.3
106,867	-				+1.1
106,879	-				+1.1
106,879	-				+0.1
106,893	-				+0.4
106,968	+		DZA65_RS00440	0.19	-1.0
106,981	-		DZA65_RS00440	0.21	+1.1
107,192	+		DZA65_RS00440	0.53	+2.0
107,193	-		DZA65_RS00440	0.53	+0.8
107,193	-		DZA65_RS00440	0.53	+1.5
107,195	+		DZA65_RS00440	0.54	-0.5
107,195	+		DZA65_RS00440	0.54	+1.1
107,196	-		DZA65_RS00440	0.54	+2.5
107,210	+		DZA65_RS00440	0.56	-0.5
107,274	+		DZA65_RS00440	0.66	-1.9
107,309	+		DZA65_RS00440	0.71	+0.1
107,309	+		DZA65_RS00440	0.71	+0.9
107,310	-		DZA65_RS00440	0.71	-0.1
107,403	-		DZA65_RS00440	0.86	-0.2
107,403	-		DZA65_RS00440	0.86	+0.3
107,546	+				-0.2
107,546	+				+1.1
107,547	-				+0.3
107,573	+				-2.3
107,574	-				+1.0
107,636	+				+0.2
107,636	+				+0.5
107,636	+				+1.3
107,637	-				+0.8
107,637	-				+0.1
107,637	-				-0.2
107,637	-				+0.7
107,637	-				-1.2
107,637	-				-1.0
107,637	-				-0.5
107,637	-				-0.2
107,637	-				+0.9
107,637	-				+0.1
107,688	+				+0.6
107,688	+				+0.7
107,688	+				-0.0
107,689	-				+0.5
107,689	-				+1.1
107,689	-				+1.0
107,689	-				-0.9
107,689	-				+1.4
107,689	-				-0.9
107,689	-				+0.5
107,689	-				+0.4
107,691	+				-0.5
107,691	+				-0.2
107,691	+				+1.9
107,691	+				+0.2
107,691	+				+0.6
107,691	+				+1.5
107,691	+				-0.1
107,691	+				+1.0
107,691	+				-0.6
107,691	+				+1.5
107,691	+				+2.1
107,691	+				+0.9
107,691	+				+2.9
107,691	+				-0.5
107,691	+				+0.7
107,692	-				-0.0
107,692	-				-0.5
107,692	-				-1.0
107,692	-				+0.8
107,692	-				-0.2
107,692	-				-1.5
107,692	-				-1.3
107,692	-				+0.5
107,692	-				-0.9
107,692	-				-1.6
107,692	-				-2.0
107,692	-				+0.2
107,692	-				+0.9
107,697	+				-1.3
107,697	+				+0.1
107,698	-				+0.1
107,698	-				-1.2
107,702	+				+1.1
107,702	+				+1.0
107,702	+				-1.9
107,702	+				+1.7
107,702	+				-0.9
107,702	+				+0.9
107,702	+				+0.7
107,702	+				-0.4
107,702	+				+1.1
107,702	+				+2.1
107,703	-				+0.5
107,703	-				-0.3
107,703	-				-0.2
107,703	-				+0.1
107,703	-				+1.5
107,703	-				-0.6
107,703	-				+1.7
107,703	-				-1.5
107,703	-				+0.1
107,703	-				-0.3
107,703	-				-1.5
107,703	-				+0.1
107,703	-				-0.2
107,703	-				-2.6
107,703	-				-1.7
107,706	+				-0.6
107,742	-				-0.4
107,752	-				+0.3
107,755	+				-0.2
107,755	+				-0.3
107,755	+				-2.0
107,755	+				+0.5
107,755	+				-1.2
107,755	+				-0.3
107,756	-				-1.5
107,756	-				+0.8
107,914	+		DZA65_RS00445	0.14	+0.8
107,914	+		DZA65_RS00445	0.14	+1.5
107,914	+		DZA65_RS00445	0.14	-1.5
107,915	-		DZA65_RS00445	0.15	+0.1
107,915	-		DZA65_RS00445	0.15	-0.1
107,983	+		DZA65_RS00445	0.22	+0.3
107,984	-		DZA65_RS00445	0.22	+0.2
107,984	-		DZA65_RS00445	0.22	-0.2
107,997	+		DZA65_RS00445	0.23	-0.5
108,018	+		DZA65_RS00445	0.26	-0.5
108,019	-		DZA65_RS00445	0.26	-0.9
108,053	+		DZA65_RS00445	0.29	+0.2
108,054	-		DZA65_RS00445	0.29	-1.7
108,054	-		DZA65_RS00445	0.29	-1.0
108,060	+		DZA65_RS00445	0.30	-1.7
108,061	-		DZA65_RS00445	0.30	+0.6
108,061	-		DZA65_RS00445	0.30	-0.5
108,061	-		DZA65_RS00445	0.30	-0.2
108,094	+		DZA65_RS00445	0.34	+0.4
108,094	+		DZA65_RS00445	0.34	-0.9
108,094	+		DZA65_RS00445	0.34	-2.2
108,095	-		DZA65_RS00445	0.34	-0.3
108,095	-		DZA65_RS00445	0.34	+0.3
108,095	-		DZA65_RS00445	0.34	-0.3
108,159	-		DZA65_RS00445	0.41	+0.1
108,160	+		DZA65_RS00445	0.41	+2.1
108,160	+		DZA65_RS00445	0.41	+2.1
108,160	+		DZA65_RS00445	0.41	-1.5
108,160	+		DZA65_RS00445	0.41	-0.3
108,160	+		DZA65_RS00445	0.41	+1.5
108,160	+		DZA65_RS00445	0.41	+1.1
108,160	+		DZA65_RS00445	0.41	-0.7
108,160	+		DZA65_RS00445	0.41	-1.5
108,161	-		DZA65_RS00445	0.41	-0.2
108,161	-		DZA65_RS00445	0.41	-0.7
108,161	-		DZA65_RS00445	0.41	+2.4
108,171	+		DZA65_RS00445	0.42	-0.9
108,171	+		DZA65_RS00445	0.42	+0.4
108,171	+		DZA65_RS00445	0.42	-0.5
108,171	+		DZA65_RS00445	0.42	-2.7
108,171	+		DZA65_RS00445	0.42	-0.0
108,171	+		DZA65_RS00445	0.42	-1.5
108,171	+		DZA65_RS00445	0.42	-0.6
108,172	-		DZA65_RS00445	0.42	-0.3
108,172	-		DZA65_RS00445	0.42	+0.3
108,172	-		DZA65_RS00445	0.42	-0.1
108,172	-		DZA65_RS00445	0.42	+0.1
108,172	-		DZA65_RS00445	0.42	+2.9
108,172	-		DZA65_RS00445	0.42	+0.2
108,172	-		DZA65_RS00445	0.42	+0.9
108,172	-		DZA65_RS00445	0.42	-0.2
108,201	+		DZA65_RS00445	0.45	+0.7
108,233	+		DZA65_RS00445	0.48	+0.3
108,233	+		DZA65_RS00445	0.48	-1.7
108,234	-		DZA65_RS00445	0.49	+1.4
108,234	-		DZA65_RS00445	0.49	+0.1
108,234	-		DZA65_RS00445	0.49	+0.6
108,247	+		DZA65_RS00445	0.50	-0.9
108,248	-		DZA65_RS00445	0.50	+2.5
108,248	-		DZA65_RS00445	0.50	+0.6
108,278	+		DZA65_RS00445	0.53	-0.2
108,278	+				+1.1
108,354	+		DZA65_RS00445	0.61	-0.1
108,355	-		DZA65_RS00445	0.61	+0.0
108,355	-		DZA65_RS00445	0.61	-0.2
108,385	+		DZA65_RS00445	0.65	-1.3
108,385	+		DZA65_RS00445	0.65	+0.7
108,385	+		DZA65_RS00445	0.65	-2.2
108,386	-		DZA65_RS00445	0.65	-0.7
108,408	-		DZA65_RS00445	0.67	+0.6
108,481	+		DZA65_RS00445	0.75	+0.8
108,481	+		DZA65_RS00445	0.75	+1.1
108,481	+		DZA65_RS00445	0.75	-0.5
108,481	+		DZA65_RS00445	0.75	-0.4
108,481	+		DZA65_RS00445	0.75	-0.1
108,481	+		DZA65_RS00445	0.75	+1.7
108,482	-		DZA65_RS00445	0.75	-0.9
108,482	-				-0.5
108,482	-		DZA65_RS00445	0.75	+0.1
108,482	-		DZA65_RS00445	0.75	+0.3
108,482	-		DZA65_RS00445	0.75	+1.0
108,485	+		DZA65_RS00445	0.75	+0.5
108,485	+		DZA65_RS00445	0.75	+1.5
108,485	+		DZA65_RS00445	0.75	+0.8
108,485	+		DZA65_RS00445	0.75	-0.4
108,485	+		DZA65_RS00445	0.75	+0.5
108,486	-		DZA65_RS00445	0.75	-0.0
108,486	-		DZA65_RS00445	0.75	+0.4
108,486	-		DZA65_RS00445	0.75	+0.8
108,486	-		DZA65_RS00445	0.75	+0.3
108,486	-		DZA65_RS00445	0.75	+0.6
108,486	-		DZA65_RS00445	0.75	-1.0
108,486	-		DZA65_RS00445	0.75	-1.7
108,486	-		DZA65_RS00445	0.75	+1.1
108,486	-		DZA65_RS00445	0.75	-2.1