Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00275

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS00270 and DZA65_RS00275 are separated by 166 nucleotidesDZA65_RS00275 and DZA65_RS00280 are separated by 105 nucleotides DZA65_RS00270: DZA65_RS00270 - mannitol-1-phosphate 5-dehydrogenase, at 65,336 to 66,484 _RS00270 DZA65_RS00275: DZA65_RS00275 - MltR family transcriptional regulator, at 66,651 to 67,181 _RS00275 DZA65_RS00280: DZA65_RS00280 - HAMP domain-containing protein, at 67,287 to 69,173 _RS00280 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 65.683 kb on + strand, within DZA65_RS00270at 65.683 kb on + strand, within DZA65_RS00270at 65.683 kb on + strand, within DZA65_RS00270at 65.812 kb on + strand, within DZA65_RS00270at 65.812 kb on + strand, within DZA65_RS00270at 66.008 kb on + strandat 66.122 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.152 kb on + strand, within DZA65_RS00270at 66.153 kb on - strand, within DZA65_RS00270at 66.153 kb on - strandat 66.153 kb on - strand, within DZA65_RS00270at 66.154 kb on + strand, within DZA65_RS00270at 66.154 kb on + strand, within DZA65_RS00270at 66.154 kb on + strand, within DZA65_RS00270at 66.154 kb on + strand, within DZA65_RS00270at 66.233 kb on - strand, within DZA65_RS00270at 66.274 kb on + strand, within DZA65_RS00270at 66.274 kb on + strand, within DZA65_RS00270at 66.467 kb on + strandat 66.467 kb on + strandat 66.467 kb on + strandat 66.467 kb on + strandat 66.467 kb on + strandat 66.467 kb on + strandat 66.468 kb on - strandat 66.468 kb on - strandat 66.469 kb on + strandat 66.483 kb on - strandat 66.632 kb on + strandat 66.632 kb on + strandat 66.632 kb on + strandat 66.637 kb on + strandat 66.637 kb on + strandat 66.638 kb on - strandat 66.638 kb on - strandat 66.638 kb on - strandat 66.638 kb on - strandat 66.722 kb on + strand, within DZA65_RS00275at 66.722 kb on + strand, within DZA65_RS00275at 66.723 kb on - strand, within DZA65_RS00275at 66.723 kb on - strand, within DZA65_RS00275at 66.742 kb on + strand, within DZA65_RS00275at 66.742 kb on + strand, within DZA65_RS00275at 66.742 kb on + strand, within DZA65_RS00275at 66.743 kb on - strand, within DZA65_RS00275at 66.743 kb on - strand, within DZA65_RS00275at 66.795 kb on + strand, within DZA65_RS00275at 66.795 kb on + strand, within DZA65_RS00275at 66.795 kb on + strand, within DZA65_RS00275at 66.795 kb on + strand, within DZA65_RS00275at 66.796 kb on - strand, within DZA65_RS00275at 66.796 kb on - strand, within DZA65_RS00275at 66.807 kb on + strand, within DZA65_RS00275at 66.807 kb on + strand, within DZA65_RS00275at 66.808 kb on - strand, within DZA65_RS00275at 66.808 kb on - strand, within DZA65_RS00275at 66.808 kb on - strand, within DZA65_RS00275at 66.827 kb on - strand, within DZA65_RS00275at 66.876 kb on + strand, within DZA65_RS00275at 66.877 kb on - strand, within DZA65_RS00275at 66.877 kb on - strand, within DZA65_RS00275at 66.877 kb on - strand, within DZA65_RS00275at 66.906 kb on + strand, within DZA65_RS00275at 66.907 kb on - strand, within DZA65_RS00275at 66.907 kb on - strand, within DZA65_RS00275at 67.288 kb on + strandat 67.289 kb on - strandat 67.295 kb on + strandat 67.295 kb on + strandat 67.295 kb on + strandat 67.295 kb on + strandat 67.296 kb on - strandat 67.296 kb on - strandat 67.296 kb on - strandat 67.297 kb on + strandat 67.297 kb on + strandat 67.297 kb on + strandat 67.297 kb on + strandat 67.297 kb on + strandat 67.297 kb on + strandat 67.297 kb on + strandat 67.297 kb on + strandat 67.297 kb on + strandat 67.298 kb on - strandat 67.298 kb on - strandat 67.298 kb on - strandat 67.563 kb on + strand, within DZA65_RS00280at 67.563 kb on + strand, within DZA65_RS00280at 67.563 kb on + strand, within DZA65_RS00280at 67.563 kb on + strand, within DZA65_RS00280at 67.563 kb on + strand, within DZA65_RS00280at 67.563 kb on + strand, within DZA65_RS00280at 67.563 kb on + strand, within DZA65_RS00280at 67.563 kb on + strand, within DZA65_RS00280at 67.563 kb on + strand, within DZA65_RS00280at 67.563 kb on + strand, within DZA65_RS00280at 67.563 kb on + strand, within DZA65_RS00280at 67.563 kb on + strand, within DZA65_RS00280at 67.564 kb on - strand, within DZA65_RS00280at 67.564 kb on - strand, within DZA65_RS00280at 67.564 kb on - strand, within DZA65_RS00280at 67.564 kb on - strand, within DZA65_RS00280at 67.564 kb on - strand, within DZA65_RS00280at 67.564 kb on - strand, within DZA65_RS00280at 67.564 kb on - strand, within DZA65_RS00280at 67.652 kb on + strand, within DZA65_RS00280at 67.652 kb on + strand, within DZA65_RS00280at 67.653 kb on - strand, within DZA65_RS00280at 67.653 kb on - strand, within DZA65_RS00280at 67.653 kb on - strand, within DZA65_RS00280at 67.706 kb on + strand, within DZA65_RS00280at 67.706 kb on + strand, within DZA65_RS00280at 67.706 kb on + strand, within DZA65_RS00280at 67.706 kb on + strandat 67.706 kb on + strand, within DZA65_RS00280at 67.707 kb on - strand, within DZA65_RS00280at 67.726 kb on - strand, within DZA65_RS00280at 67.859 kb on + strand, within DZA65_RS00280at 67.926 kb on + strand, within DZA65_RS00280at 67.926 kb on + strand, within DZA65_RS00280at 67.926 kb on + strand, within DZA65_RS00280at 67.926 kb on + strand, within DZA65_RS00280at 67.927 kb on - strand, within DZA65_RS00280at 67.927 kb on - strand, within DZA65_RS00280at 67.983 kb on + strand, within DZA65_RS00280at 67.984 kb on - strand, within DZA65_RS00280at 68.014 kb on - strand, within DZA65_RS00280

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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65,683 + DZA65_RS00270 0.30 +0.1
65,683 + DZA65_RS00270 0.30 -1.7
65,683 + DZA65_RS00270 0.30 -0.3
65,812 + DZA65_RS00270 0.41 -1.5
65,812 + DZA65_RS00270 0.41 +0.1
66,008 + +4.2
66,122 + DZA65_RS00270 0.68 -0.0
66,152 + DZA65_RS00270 0.71 -1.7
66,152 + DZA65_RS00270 0.71 -0.6
66,152 + DZA65_RS00270 0.71 +1.1
66,152 + DZA65_RS00270 0.71 -1.9
66,152 + DZA65_RS00270 0.71 +1.2
66,152 + DZA65_RS00270 0.71 -1.3
66,152 + DZA65_RS00270 0.71 +0.3
66,152 + DZA65_RS00270 0.71 -0.5
66,152 + DZA65_RS00270 0.71 -0.9
66,152 + DZA65_RS00270 0.71 -1.5
66,152 + DZA65_RS00270 0.71 -1.5
66,152 + DZA65_RS00270 0.71 -0.2
66,152 + DZA65_RS00270 0.71 +0.4
66,152 + DZA65_RS00270 0.71 +0.6
66,153 - DZA65_RS00270 0.71 -0.1
66,153 - +1.7
66,153 - DZA65_RS00270 0.71 -1.4
66,154 + DZA65_RS00270 0.71 -0.7
66,154 + DZA65_RS00270 0.71 +1.5
66,154 + DZA65_RS00270 0.71 -0.4
66,154 + DZA65_RS00270 0.71 -1.7
66,233 - DZA65_RS00270 0.78 -0.3
66,274 + DZA65_RS00270 0.82 +0.5
66,274 + DZA65_RS00270 0.82 -1.6
66,467 + -0.3
66,467 + -2.8
66,467 + +1.9
66,467 + -0.5
66,467 + -1.2
66,467 + +0.2
66,468 - -0.5
66,468 - +0.5
66,469 + -1.0
66,483 - +0.5
66,632 + -0.9
66,632 + -0.2
66,632 + -0.4
66,637 + +1.1
66,637 + -1.0
66,638 - -0.5
66,638 - +0.2
66,638 - -1.3
66,638 - +0.2
66,722 + DZA65_RS00275 0.13 +2.1
66,722 + DZA65_RS00275 0.13 +0.6
66,723 - DZA65_RS00275 0.14 -1.3
66,723 - DZA65_RS00275 0.14 -0.7
66,742 + DZA65_RS00275 0.17 +1.7
66,742 + DZA65_RS00275 0.17 +0.1
66,742 + DZA65_RS00275 0.17 -2.1
66,743 - DZA65_RS00275 0.17 +0.4
66,743 - DZA65_RS00275 0.17 -0.9
66,795 + DZA65_RS00275 0.27 +0.3
66,795 + DZA65_RS00275 0.27 +1.4
66,795 + DZA65_RS00275 0.27 -0.7
66,795 + DZA65_RS00275 0.27 -0.5
66,796 - DZA65_RS00275 0.27 +1.6
66,796 - DZA65_RS00275 0.27 -1.4
66,807 + DZA65_RS00275 0.29 -0.5
66,807 + DZA65_RS00275 0.29 +0.3
66,808 - DZA65_RS00275 0.30 +0.1
66,808 - DZA65_RS00275 0.30 +2.1
66,808 - DZA65_RS00275 0.30 -1.1
66,827 - DZA65_RS00275 0.33 +2.1
66,876 + DZA65_RS00275 0.42 -2.0
66,877 - DZA65_RS00275 0.43 +0.3
66,877 - DZA65_RS00275 0.43 -0.1
66,877 - DZA65_RS00275 0.43 +0.4
66,906 + DZA65_RS00275 0.48 +0.4
66,907 - DZA65_RS00275 0.48 -2.2
66,907 - DZA65_RS00275 0.48 -0.9
67,288 + +0.5
67,289 - -0.5
67,295 + -0.5
67,295 + -0.2
67,295 + +0.5
67,295 + -1.9
67,296 - -1.8
67,296 - +0.1
67,296 - -0.1
67,297 + -0.9
67,297 + -0.7
67,297 + +0.5
67,297 + -1.9
67,297 + -0.2
67,297 + -0.3
67,297 + -0.3
67,297 + -1.7
67,297 + +1.1
67,298 - +1.1
67,298 - -1.5
67,298 - -0.5
67,563 + DZA65_RS00280 0.15 -1.7
67,563 + DZA65_RS00280 0.15 -0.9
67,563 + DZA65_RS00280 0.15 -0.2
67,563 + DZA65_RS00280 0.15 +2.1
67,563 + DZA65_RS00280 0.15 -0.5
67,563 + DZA65_RS00280 0.15 +1.5
67,563 + DZA65_RS00280 0.15 -0.9
67,563 + DZA65_RS00280 0.15 +0.3
67,563 + DZA65_RS00280 0.15 -0.7
67,563 + DZA65_RS00280 0.15 +1.1
67,563 + DZA65_RS00280 0.15 +0.1
67,563 + DZA65_RS00280 0.15 +0.5
67,564 - DZA65_RS00280 0.15 +0.1
67,564 - DZA65_RS00280 0.15 -0.2
67,564 - DZA65_RS00280 0.15 -0.7
67,564 - DZA65_RS00280 0.15 -0.3
67,564 - DZA65_RS00280 0.15 -0.2
67,564 - DZA65_RS00280 0.15 +0.3
67,564 - DZA65_RS00280 0.15 +1.1
67,652 + DZA65_RS00280 0.19 -0.5
67,652 + DZA65_RS00280 0.19 -0.1
67,653 - DZA65_RS00280 0.19 -1.1
67,653 - DZA65_RS00280 0.19 +0.1
67,653 - DZA65_RS00280 0.19 -1.5
67,706 + DZA65_RS00280 0.22 +1.5
67,706 + DZA65_RS00280 0.22 -2.0
67,706 + DZA65_RS00280 0.22 -0.2
67,706 + +1.7
67,706 + DZA65_RS00280 0.22 +0.4
67,707 - DZA65_RS00280 0.22 +1.1
67,726 - DZA65_RS00280 0.23 -0.6
67,859 + DZA65_RS00280 0.30 -1.0
67,926 + DZA65_RS00280 0.34 -0.9
67,926 + DZA65_RS00280 0.34 -0.5
67,926 + DZA65_RS00280 0.34 +0.1
67,926 + DZA65_RS00280 0.34 -1.3
67,927 - DZA65_RS00280 0.34 +0.5
67,927 - DZA65_RS00280 0.34 -0.7
67,983 + DZA65_RS00280 0.37 -2.5
67,984 - DZA65_RS00280 0.37 +1.0
68,014 - DZA65_RS00280 0.39 -1.5

Or see this region's nucleotide sequence