Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22670

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,900,519	+		DZA65_RS22660	0.53	+0.9
4,900,519	+		DZA65_RS22660	0.53	+0.3
4,900,520	-		DZA65_RS22660	0.53	+0.4
4,900,599	+		DZA65_RS22660	0.62	+0.3
4,900,599	+		DZA65_RS22660	0.62	-0.0
4,900,599	+		DZA65_RS22660	0.62	-1.3
4,900,599	+		DZA65_RS22660	0.62	-2.6
4,900,641	+		DZA65_RS22660	0.66	-2.6
4,900,641	+		DZA65_RS22660	0.66	+1.0
4,900,641	+		DZA65_RS22660	0.66	-0.3
4,900,641	+		DZA65_RS22660	0.66	-0.2
4,900,641	+		DZA65_RS22660	0.66	+1.0
4,900,641	+		DZA65_RS22660	0.66	-1.2
4,900,641	+		DZA65_RS22660	0.66	-1.3
4,900,642	-		DZA65_RS22660	0.66	-0.5
4,900,642	-		DZA65_RS22660	0.66	+1.0
4,900,642	-		DZA65_RS22660	0.66	-0.2
4,900,642	-		DZA65_RS22660	0.66	-0.6
4,900,642	-		DZA65_RS22660	0.66	+0.4
4,900,657	+		DZA65_RS22660	0.67	-0.2
4,900,657	+		DZA65_RS22660	0.67	-0.5
4,900,658	-		DZA65_RS22660	0.68	-1.0
4,900,762	-		DZA65_RS22660	0.78	-0.7
4,900,762	-		DZA65_RS22660	0.78	+1.0
4,901,027	-				+0.3
4,901,028	+				-1.3
4,901,072	+				+1.6
4,901,072	+				+3.6
4,901,079	+				-1.0
4,901,079	+				-1.6
4,901,080	-				-0.2
4,901,080	-				-0.6
4,901,080	-				-1.8
4,901,080	-				-0.0
4,901,094	+				+1.0
4,901,094	+				+1.0
4,901,094	+				-0.0
4,901,094	+				-2.8
4,901,094	+				+0.2
4,901,095	-				+1.3
4,901,095	-				-0.4
4,901,095	-				-1.8
4,901,095	-				+0.8
4,901,095	-				+0.8
4,901,095	-				+0.8
4,901,095	-				-0.4
4,901,095	-				+1.0
4,901,103	+				-1.3
4,901,104	-				-0.5
4,901,104	-				+0.2
4,901,104	-				-0.0
4,901,106	+				-0.0
4,901,106	+				+0.1
4,901,106	+				+1.3
4,901,107	-				+0.3
4,901,107	-				-0.7
4,901,109	+				+0.5
4,901,128	+				+0.3
4,901,129	-				+1.0
4,901,132	+				+0.8
4,901,133	-				-0.1
4,901,140	+				+0.4
4,901,184	+				-0.6
4,901,188	-				-0.1
4,901,217	+				-0.9
4,901,251	-		DZA65_RS22665	0.10	+2.6
4,901,258	-		DZA65_RS22665	0.13	-1.4
4,901,268	+		DZA65_RS22665	0.16	+0.2
4,901,268	+		DZA65_RS22665	0.16	+0.6
4,901,311	-		DZA65_RS22665	0.33	-0.6
4,901,311	-		DZA65_RS22665	0.33	+0.1
4,901,311	-		DZA65_RS22665	0.33	-1.0
4,901,385	+		DZA65_RS22665	0.60	-0.8
4,901,386	-		DZA65_RS22665	0.61	+0.2
4,901,386	-		DZA65_RS22665	0.61	-1.3
4,901,408	+		DZA65_RS22665	0.69	+1.8
4,901,408	+		DZA65_RS22665	0.69	-1.5
4,901,421	+		DZA65_RS22665	0.74	-0.4
4,901,422	-		DZA65_RS22665	0.74	+2.0
4,901,422	-		DZA65_RS22665	0.74	-1.0
4,901,508	+				-0.5
4,901,509	-				+1.8
4,901,547	+		DZA65_RS22670	0.13	-0.3
4,901,547	+		DZA65_RS22670	0.13	-0.0
4,901,547	+		DZA65_RS22670	0.13	-0.0
4,901,547	+		DZA65_RS22670	0.13	-1.8
4,901,547	+		DZA65_RS22670	0.13	+1.6
4,901,547	+		DZA65_RS22670	0.13	+0.4
4,901,547	+		DZA65_RS22670	0.13	-0.8
4,901,547	+		DZA65_RS22670	0.13	+0.1
4,901,548	-		DZA65_RS22670	0.13	-0.0
4,901,548	-		DZA65_RS22670	0.13	+0.2
4,901,548	-		DZA65_RS22670	0.13	+1.0
4,901,548	-		DZA65_RS22670	0.13	+0.6
4,901,548	-		DZA65_RS22670	0.13	-0.3
4,901,552	+		DZA65_RS22670	0.15	+0.7
4,901,553	-		DZA65_RS22670	0.15	+1.3
4,901,663	+		DZA65_RS22670	0.57	+0.4
4,901,663	+		DZA65_RS22670	0.57	-0.3
4,901,664	-		DZA65_RS22670	0.57	-1.2
4,901,664	-		DZA65_RS22670	0.57	+0.0
4,901,664	-		DZA65_RS22670	0.57	+1.2
4,901,691	-		DZA65_RS22670	0.68	+0.2
4,901,708	+		DZA65_RS22670	0.74	+0.2
4,901,708	+		DZA65_RS22670	0.74	+1.6
4,901,708	+		DZA65_RS22670	0.74	-2.6
4,901,708	+		DZA65_RS22670	0.74	-1.8
4,901,709	-		DZA65_RS22670	0.75	-0.9
4,901,709	-		DZA65_RS22670	0.75	+0.4
4,901,709	-				+1.0
4,901,755	+				+0.1
4,901,756	-				+1.3
4,901,772	+				+0.1
4,901,773	-				+1.0
4,901,773	-				+0.8
4,901,783	+				+0.6
4,901,809	+				-0.3
4,901,809	+				-1.2
4,901,891	+				+1.5
4,901,892	-				-0.1
4,901,895	+				-0.5
4,901,895	+				+1.0
4,901,895	+				+0.3
4,901,895	+				-0.6
4,901,895	+				+0.7
4,901,895	+				-0.8
4,901,895	+				-0.6
4,901,895	+				+2.0
4,901,895	+				+0.5
4,901,896	-				+1.1
4,901,896	-				+1.6
4,901,896	-				+0.8
4,901,896	-				-0.0
4,901,896	-				-0.0
4,901,896	-				+0.1
4,901,896	-				+0.3
4,901,896	-				+0.1
4,901,896	-				-0.6
4,901,905	+				+1.0
4,901,905	+				+1.0
4,901,905	+				-0.7
4,901,906	-				-0.0
4,901,906	-				+0.3
4,901,906	-				+0.2
4,901,906	-				-0.6
4,901,906	-				-0.0
4,901,906	-				+0.7
4,901,906	-				-1.6
4,901,910	+				-0.4
4,901,917	+				-0.8
4,901,918	-				+0.2
4,901,921	-				-2.0
4,901,928	-				-0.4
4,901,930	+				-0.3
4,901,930	+				+1.1
4,901,930	+				-0.6
4,901,930	+				-0.5
4,901,930	+				+0.1
4,901,930	+				+0.7
4,901,930	+				+1.1
4,901,931	-				-0.2
4,901,931	-				+1.0
4,901,931	-				+0.4
4,901,971	-				-1.1
4,902,022	+				-1.0
4,902,022	+				+0.2
4,902,023	-				+0.6
4,902,073	+				-1.6
4,902,073	+				-0.2
4,902,073	+				+0.3
4,902,073	+				+0.5
4,902,074	-				-0.6
4,902,074	-				+0.7
4,902,074	-				+0.6
4,902,096	-				+0.4
4,902,141	+				+0.7
4,902,141	+				+0.6
4,902,141	+				-0.1
4,902,142	-				+0.1
4,902,200	+				+0.7
4,902,200	+				+0.2
4,902,200	+				-2.0
4,902,200	+				-2.2
4,902,201	-				+2.2
4,902,201	-				-1.8
4,902,201	-				+0.6
4,902,223	+				-0.6
4,902,223	+				+0.4
4,902,224	-				-0.5
4,902,224	-				+0.8
4,902,234	+				-1.6
4,902,234	+				-0.0
4,902,234	+				-0.6
4,902,234	+				+2.0
4,902,234	+				-0.0
4,902,234	+				+0.4
4,902,235	-				+1.5
4,902,235	-				-0.1
4,902,235	-				-1.5
4,902,235	-				+2.5
4,902,235	-				-0.3
4,902,235	-				+1.7
4,902,237	+				-0.0
4,902,237	+				-0.8
4,902,237	+				-0.4
4,902,237	+				-0.4
4,902,238	-				+1.0
4,902,238	-				+1.2
4,902,238	-				+1.3
4,902,246	+				+1.3
4,902,247	-				-0.8
4,902,247	-				+1.0
4,902,270	-				+0.1
4,902,277	+				-0.1
4,902,278	-				+1.3
4,902,328	-				+1.7
4,902,328	-				+0.9
4,902,335	-				-0.0
4,902,335	-				+0.8
4,902,349	-				+0.4
4,902,395	+				-1.3
4,902,404	+				-0.6
4,902,404	+				-0.0
4,902,404	+				-0.6
4,902,451	+				+1.0
4,902,474	+				+0.5
4,902,474	+				+0.6
4,902,474	+				-0.6
4,902,474	+				-0.9
4,902,475	-				-0.0
4,902,483	+				+0.6
4,902,483	+				+0.2
4,902,483	+				-1.8
4,902,483	+				+0.3
4,902,484	-				-0.5
4,902,484	-				-0.2
4,902,484	-				+1.2
4,902,484	-				+0.6
4,902,487	+				-2.0
4,902,487	+				+0.2
4,902,487	+				+1.4
4,902,487	+				-0.1
4,902,487	+				+0.4
4,902,487	+				-0.2
4,902,487	+				+0.9
4,902,487	+				-0.0
4,902,487	+				+1.0
4,902,488	-				-1.0
4,902,488	-				+0.6
4,902,488	-				-0.1
4,902,502	+				+1.8
4,902,503	-				-0.8
4,902,503	-				-0.6
4,902,503	-				+1.0
4,902,515	+				-1.2
4,902,516	-				-2.3
4,902,516	-				+1.1
4,902,518	+				-0.6
4,902,518	+				-0.0
4,902,518	+				-0.1
4,902,518	+				+1.0
4,902,518	+				-0.7
4,902,518	+				-0.5
4,902,518	+				+0.3
4,902,519	-				+1.0
4,902,519	-				-2.6
4,902,521	+				-0.2
4,902,521	+				-2.0
4,902,557	+		DZA65_RS22680	0.11	-1.3
4,902,557	+		DZA65_RS22680	0.11	-1.2
4,902,558	-		DZA65_RS22680	0.11	-1.3
4,902,558	-		DZA65_RS22680	0.11	+0.3
4,902,558	-		DZA65_RS22680	0.11	-0.7
4,902,574	+		DZA65_RS22680	0.14	-0.7
4,902,574	+		DZA65_RS22680	0.14	+0.7
4,902,574	+		DZA65_RS22680	0.14	-0.0
4,902,574	+		DZA65_RS22680	0.14	-1.2
4,902,574	+		DZA65_RS22680	0.14	+1.0
4,902,575	-		DZA65_RS22680	0.14	+0.4
4,902,575	-		DZA65_RS22680	0.14	+0.1
4,902,575	-		DZA65_RS22680	0.14	-2.0
4,902,575	-		DZA65_RS22680	0.14	+0.6
4,902,578	+		DZA65_RS22680	0.14	+1.0
4,902,578	+		DZA65_RS22680	0.14	+0.1
4,902,578	+		DZA65_RS22680	0.14	+1.4
4,902,578	+		DZA65_RS22680	0.14	-0.2
4,902,578	+		DZA65_RS22680	0.14	-0.3
4,902,578	+		DZA65_RS22680	0.14	-0.0
4,902,578	+		DZA65_RS22680	0.14	+1.4
4,902,579	-		DZA65_RS22680	0.15	-0.6
4,902,579	-		DZA65_RS22680	0.15	-0.9
4,902,579	-		DZA65_RS22680	0.15	-0.5
4,902,579	-		DZA65_RS22680	0.15	-0.3
4,902,579	-		DZA65_RS22680	0.15	-0.4
4,902,594	+		DZA65_RS22680	0.17	-0.0
4,902,594	+		DZA65_RS22680	0.17	+1.0
4,902,594	+		DZA65_RS22680	0.17	-0.2
4,902,594	+		DZA65_RS22680	0.17	+0.6
4,902,594	+		DZA65_RS22680	0.17	-0.1
4,902,594	+		DZA65_RS22680	0.17	-2.2
4,902,594	+		DZA65_RS22680	0.17	+1.0
4,902,594	+		DZA65_RS22680	0.17	-0.8
4,902,594	+		DZA65_RS22680	0.17	-1.3
4,902,594	+		DZA65_RS22680	0.17	-0.5
4,902,595	-		DZA65_RS22680	0.17	+0.3
4,902,595	-		DZA65_RS22680	0.17	+0.2
4,902,595	-		DZA65_RS22680	0.17	+1.4
4,902,595	-		DZA65_RS22680	0.17	+1.4
4,902,595	-		DZA65_RS22680	0.17	-0.3
4,902,595	-		DZA65_RS22680	0.17	-0.6
4,902,595	-		DZA65_RS22680	0.17	+1.1
4,902,595	-		DZA65_RS22680	0.17	-0.6
4,902,595	-		DZA65_RS22680	0.17	+3.4
4,902,595	-		DZA65_RS22680	0.17	-2.0
4,902,595	-		DZA65_RS22680	0.17	-2.1
4,902,595	-		DZA65_RS22680	0.17	-2.3
4,902,595	-		DZA65_RS22680	0.17	-0.4
4,902,619	+		DZA65_RS22680	0.21	-0.6
4,902,619	+		DZA65_RS22680	0.21	+0.3
4,902,619	+		DZA65_RS22680	0.21	+0.7
4,902,619	+		DZA65_RS22680	0.21	-1.0
4,902,620	-		DZA65_RS22680	0.21	-1.3
4,902,620	-		DZA65_RS22680	0.21	-0.2
4,902,620	-		DZA65_RS22680	0.21	-0.3
4,902,620	-		DZA65_RS22680	0.21	-0.7
4,902,677	+		DZA65_RS22680	0.31	+0.3
4,902,755	-		DZA65_RS22680	0.44	-0.7