Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22555

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,877,312	+		DZA65_RS22550	0.16	-0.7
4,877,313	-		DZA65_RS22550	0.16	-0.0
4,877,313	-		DZA65_RS22550	0.16	-0.4
4,877,386	-		DZA65_RS22550	0.25	+0.1
4,877,485	+		DZA65_RS22550	0.36	-2.0
4,877,485	+		DZA65_RS22550	0.36	-1.8
4,877,485	+		DZA65_RS22550	0.36	-1.5
4,877,486	-		DZA65_RS22550	0.36	-0.6
4,877,587	+		DZA65_RS22550	0.47	-0.4
4,877,589	+		DZA65_RS22550	0.48	-0.3
4,877,589	+		DZA65_RS22550	0.48	-0.8
4,877,589	+		DZA65_RS22550	0.48	-2.6
4,877,589	+		DZA65_RS22550	0.48	+0.2
4,877,590	-		DZA65_RS22550	0.48	+1.0
4,877,590	-		DZA65_RS22550	0.48	+0.9
4,877,590	-		DZA65_RS22550	0.48	+1.6
4,877,590	-		DZA65_RS22550	0.48	-2.0
4,877,665	-		DZA65_RS22550	0.56	+0.2
4,877,665	-		DZA65_RS22550	0.56	+0.4
4,877,729	-		DZA65_RS22550	0.63	+2.0
4,877,729	-		DZA65_RS22550	0.63	+1.6
4,877,808	-		DZA65_RS22550	0.72	-1.3
4,877,856	+		DZA65_RS22550	0.78	+1.4
4,877,856	+		DZA65_RS22550	0.78	-1.9
4,877,857	-		DZA65_RS22550	0.78	+1.7
4,877,982	-				+0.7
4,878,052	+				-0.9
4,878,052	+				+0.3
4,878,076	+				+0.8
4,878,076	+				-0.0
4,878,076	+				+0.3
4,878,077	-				-0.7
4,878,077	-				-2.3
4,878,077	-				+0.6
4,878,077	-				-0.4
4,878,089	+				-0.2
4,878,089	+				+1.5
4,878,089	+				+1.0
4,878,089	+				+1.0
4,878,089	+				-0.9
4,878,089	+				-1.0
4,878,089	+				-0.8
4,878,089	+				-0.9
4,878,089	+				+1.0
4,878,089	+				+1.4
4,878,089	+				-1.3
4,878,089	+				+0.8
4,878,089	+				-0.8
4,878,089	+				+1.7
4,878,089	+				+0.2
4,878,090	-				+0.6
4,878,090	-				+0.1
4,878,090	-				-0.0
4,878,090	-				+0.2
4,878,090	-				+1.3
4,878,090	-				+0.7
4,878,090	-				+0.3
4,878,090	-				-0.3
4,878,090	-				-0.7
4,878,090	-				-0.4
4,878,090	-				-0.9
4,878,090	-				+0.7
4,878,090	-				+0.2
4,878,090	-				-0.3
4,878,090	-				-0.3
4,878,090	-				-0.7
4,878,090	-				+0.2
4,878,090	-				+1.6
4,878,090	-				-1.0
4,878,090	-				+0.4
4,878,090	-				+1.8
4,878,091	+				+0.7
4,878,091	+				-2.5
4,878,091	+				-0.7
4,878,091	+				+0.1
4,878,091	+				-0.1
4,878,091	+				-0.3
4,878,091	+				-0.0
4,878,091	+				+0.3
4,878,091	+				+1.0
4,878,091	+				+0.3
4,878,091	+				-1.3
4,878,091	+				-1.1
4,878,091	+				-0.7
4,878,091	+				-0.6
4,878,091	+				+0.1
4,878,091	+				-1.2
4,878,092	-				-0.4
4,878,092	-				-0.3
4,878,092	-				-1.3
4,878,092	-				-1.5
4,878,092	-				+0.2
4,878,092	-				-0.0
4,878,092	-				+0.5
4,878,092	-				+0.3
4,878,092	-				+0.6
4,878,092	-				-0.2
4,878,150	+				+0.3
4,878,150	+				+1.3
4,878,150	+				+1.3
4,878,150	+				-1.6
4,878,150	+				+0.1
4,878,150	+				-2.0
4,878,150	+				-1.0
4,878,151	-				-1.6
4,878,151	-				+0.6
4,878,202	+				+0.3
4,878,202	+				+1.6
4,878,202	+				+0.7
4,878,202	+				+1.0
4,878,203	-				-0.7
4,878,203	-				+0.8
4,878,203	-				-1.3
4,878,203	-				-0.4
4,878,203	-				+2.0
4,878,203	-				-0.6
4,878,249	+		DZA65_RS22555	0.13	+0.3
4,878,270	+		DZA65_RS22555	0.16	-0.6
4,878,318	+		DZA65_RS22555	0.22	+0.7
4,878,319	-		DZA65_RS22555	0.22	-1.0
4,878,319	-		DZA65_RS22555	0.22	-0.0
4,878,319	-		DZA65_RS22555	0.22	+0.3
4,878,319	-		DZA65_RS22555	0.22	+0.6
4,878,325	+		DZA65_RS22555	0.23	+2.2
4,878,325	+		DZA65_RS22555	0.23	+0.3
4,878,325	+		DZA65_RS22555	0.23	-1.0
4,878,326	-		DZA65_RS22555	0.23	+0.6
4,878,326	-		DZA65_RS22555	0.23	+0.5
4,878,326	-		DZA65_RS22555	0.23	-0.6
4,878,326	-		DZA65_RS22555	0.23	+1.4
4,878,326	-		DZA65_RS22555	0.23	-0.0
4,878,381	+		DZA65_RS22555	0.30	-0.0
4,878,381	+		DZA65_RS22555	0.30	+0.2
4,878,382	-		DZA65_RS22555	0.31	+1.4
4,878,382	-		DZA65_RS22555	0.31	-1.3
4,878,382	-		DZA65_RS22555	0.31	-0.2
4,878,403	-		DZA65_RS22555	0.33	+0.2
4,878,469	+		DZA65_RS22555	0.42	-0.4
4,878,470	-		DZA65_RS22555	0.42	+0.7
4,878,477	+		DZA65_RS22555	0.43	-0.0
4,878,477	+		DZA65_RS22555	0.43	-0.0
4,878,477	+		DZA65_RS22555	0.43	-1.8
4,878,477	+		DZA65_RS22555	0.43	+1.0
4,878,477	+		DZA65_RS22555	0.43	+0.1
4,878,478	-		DZA65_RS22555	0.43	-2.2
4,878,478	-		DZA65_RS22555	0.43	-0.0
4,878,536	+		DZA65_RS22555	0.50	-0.9
4,878,536	+		DZA65_RS22555	0.50	+1.3
4,878,537	-		DZA65_RS22555	0.50	+0.6
4,878,602	-		DZA65_RS22555	0.59	-0.5
4,878,754	+		DZA65_RS22555	0.78	-0.1
4,878,754	+		DZA65_RS22555	0.78	+1.0
4,878,754	+		DZA65_RS22555	0.78	-2.8
4,878,754	+		DZA65_RS22555	0.78	+1.2
4,878,754	+		DZA65_RS22555	0.78	-0.1
4,878,754	+		DZA65_RS22555	0.78	+1.0
4,878,754	+		DZA65_RS22555	0.78	+0.9
4,878,754	+		DZA65_RS22555	0.78	-0.3
4,878,755	-		DZA65_RS22555	0.79	+0.5
4,878,755	-		DZA65_RS22555	0.79	+0.1
4,878,755	-		DZA65_RS22555	0.79	+1.0
4,878,755	-		DZA65_RS22555	0.79	+0.6
4,878,755	-		DZA65_RS22555	0.79	+1.4
4,878,755	-		DZA65_RS22555	0.79	+0.2
4,878,755	-		DZA65_RS22555	0.79	-0.0
4,878,755	-		DZA65_RS22555	0.79	-0.4
4,878,755	-		DZA65_RS22555	0.79	-1.0
4,878,755	-		DZA65_RS22555	0.79	-0.6
4,878,755	-		DZA65_RS22555	0.79	+0.3
4,878,756	+		DZA65_RS22555	0.79	-1.8
4,878,756	+		DZA65_RS22555	0.79	+0.3
4,878,756	+		DZA65_RS22555	0.79	+0.4
4,878,757	-		DZA65_RS22555	0.79	+0.2
4,878,757	-		DZA65_RS22555	0.79	-1.6
4,878,757	-		DZA65_RS22555	0.79	-0.2
4,878,757	-		DZA65_RS22555	0.79	+0.3
4,878,757	-		DZA65_RS22555	0.79	-1.3
4,878,757	-		DZA65_RS22555	0.79	-1.7
4,878,777	+		DZA65_RS22555	0.81	+1.6
4,878,778	-		DZA65_RS22555	0.81	+1.3
4,878,778	-		DZA65_RS22555	0.81	-0.4
4,878,778	-		DZA65_RS22555	0.81	+0.4
4,878,778	-		DZA65_RS22555	0.81	+0.8
4,878,810	+		DZA65_RS22555	0.86	+0.1
4,878,819	+		DZA65_RS22555	0.87	+0.6
4,878,819	+		DZA65_RS22555	0.87	+0.9
4,878,819	+		DZA65_RS22555	0.87	+3.5
4,878,819	+		DZA65_RS22555	0.87	-0.3
4,878,819	+		DZA65_RS22555	0.87	-0.8
4,878,819	+		DZA65_RS22555	0.87	+1.0
4,878,819	+		DZA65_RS22555	0.87	+1.1
4,878,819	+		DZA65_RS22555	0.87	-0.1
4,878,820	-		DZA65_RS22555	0.87	+1.2
4,878,820	-		DZA65_RS22555	0.87	+0.4
4,878,820	-		DZA65_RS22555	0.87	-0.6
4,878,823	+		DZA65_RS22555	0.87	+0.2
4,878,823	+		DZA65_RS22555	0.87	-1.2
4,878,823	+		DZA65_RS22555	0.87	+0.3
4,878,823	+		DZA65_RS22555	0.87	-1.0
4,878,823	+		DZA65_RS22555	0.87	-1.9
4,878,852	+				+0.6
4,878,898	+				-0.7
4,878,898	+				+1.2
4,878,898	+				+0.6
4,878,898	+				-1.1
4,878,898	+				+0.7
4,878,898	+				+1.0
4,878,898	+				-0.0
4,878,898	+				-0.1
4,878,898	+				+1.0
4,878,898	+				+0.8
4,878,898	+				-1.4
4,878,898	+				+1.4
4,878,898	+				-0.2
4,878,898	+				-0.4
4,878,898	+				-0.8
4,878,898	+				+0.3
4,878,898	+				+0.6
4,878,899	-				+0.5
4,878,899	-				-0.6
4,878,899	-				-0.7
4,878,899	-				+2.0
4,878,899	-				+1.1
4,878,899	-				-0.1
4,878,899	-				-0.0
4,878,899	-				+1.0
4,878,931	+				+1.3
4,878,931	+				+0.8
4,878,931	+				-1.2
4,879,664	+				+0.3
4,879,665	-				+1.4
4,879,675	+				-1.3
4,879,675	+				-2.6
4,879,675	+				-0.7
4,879,675	+				+0.1
4,879,675	+				-0.6
4,879,675	+				+0.3
4,879,675	+				+2.0
4,879,676	-				-0.9
4,879,676	-				-0.3
4,879,676	-				-0.2
4,879,676	-				+0.6
4,879,676	-				+1.0
4,879,676	-				+0.3
4,879,679	+				+0.1
4,879,679	+				-2.3
4,879,679	+				-0.4
4,879,680	-				-1.7
4,879,680	-				-0.8
4,879,680	-				+1.0
4,879,680	-				-0.5
4,879,737	-				-0.3
4,879,737	-				-0.1
4,879,737	-				+0.1
4,879,750	+				+0.6
4,879,750	+				+0.1
4,879,750	+				-0.1
4,879,750	+				-0.6
4,879,751	-				-1.6
4,879,751	-				+0.7
4,879,751	-				-1.7
4,879,751	-				+0.7
4,879,797	-				+1.0
4,879,798	+				-0.1
4,879,798	+				-1.3
4,879,798	+				-0.4
4,879,799	-				-0.6
4,879,799	-				+1.1
4,879,799	-				-0.2
4,879,799	-				+0.7
4,879,799	-				-0.1
4,879,799	-				-0.5
4,879,799	-				+1.0
4,879,803	+				-0.3
4,879,803	+				+0.7
4,879,803	+				-0.2
4,879,803	+				+1.3
4,879,803	+				-0.7
4,879,803	+				+0.2
4,879,803	+				+0.6
4,879,803	+				+1.6
4,879,803	+				-1.0
4,879,803	+				+0.1
4,879,803	+				+0.0
4,879,803	+				-0.3
4,879,803	+				+0.2
4,879,803	+				+0.7
4,879,803	+				-0.6
4,879,803	+				-0.6
4,879,803	+				+0.8
4,879,804	-				+0.3
4,879,804	-				-1.0
4,879,804	-				+0.6
4,879,804	-				-1.0
4,879,804	-				+0.4
4,879,804	-				-0.6
4,879,804	-				+1.0
4,879,804	-				+1.7
4,879,804	-				-0.0
4,879,804	-				-0.2
4,879,804	-				-0.5
4,879,804	-				+1.0
4,879,804	-				+2.2
4,879,804	-				+0.4
4,879,804	-				+1.0
4,879,804	-				-2.3
4,879,804	-				-0.0
4,879,804	-				+0.6
4,879,804	-				-1.0
4,879,804	-				-0.3
4,879,804	-				-0.7
4,879,804	-				+2.0
4,879,804	-				-0.6
4,879,811	+				-0.8
4,879,811	+				-0.6
4,879,812	-				+0.2
4,879,812	-				+1.6
4,879,812	-				-0.0
4,879,812	-				-0.5
4,879,812	-				+0.6
4,879,812	-				-0.8
4,879,814	+				-1.2
4,879,815	-				-0.6
4,879,815	-				-0.8
4,879,815	-				-1.5
4,879,824	+				+0.7
4,879,824	+				-1.0
4,879,824	+				-0.6
4,879,824	+				+1.3
4,879,825	-				+0.9
4,879,825	-				-0.1
4,879,825	-				-0.6
4,879,825	-				+1.7
4,879,825	-				+0.1
4,879,829	+				+0.8
4,879,829	+				+0.7
4,879,829	+				-0.5
4,879,829	+				+0.4
4,879,830	-				-1.3
4,879,866	+				-0.1
4,879,867	-				+0.9