Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22120

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,781,007	-		DZA65_RS22110	0.79	+0.3
4,781,075	+		DZA65_RS22110	0.90	-0.0
4,781,076	-		DZA65_RS22110	0.90	-1.7
4,781,106	+				-0.1
4,781,106	+				-1.3
4,781,106	+				-0.6
4,781,106	+				+0.4
4,781,107	-				+1.0
4,781,107	-				-0.1
4,781,140	-				+0.8
4,781,153	+				-0.4
4,781,153	+				-0.8
4,781,153	+				+2.0
4,781,154	-				-0.0
4,781,160	+				-0.9
4,781,161	-				-0.9
4,781,166	+				-0.2
4,781,166	+				-0.6
4,781,167	-				+1.4
4,781,167	-				-0.2
4,781,167	-				+0.4
4,781,242	+		DZA65_RS22115	0.12	+1.8
4,781,242	+		DZA65_RS22115	0.12	+0.3
4,781,242	+		DZA65_RS22115	0.12	+1.2
4,781,242	+		DZA65_RS22115	0.12	+0.1
4,781,243	-		DZA65_RS22115	0.12	+0.1
4,781,243	-		DZA65_RS22115	0.12	-2.2
4,781,243	-		DZA65_RS22115	0.12	+0.4
4,781,291	+		DZA65_RS22115	0.18	+1.0
4,781,313	+		DZA65_RS22115	0.21	+0.1
4,781,314	-		DZA65_RS22115	0.21	-0.4
4,781,400	+		DZA65_RS22115	0.32	-1.5
4,781,400	+		DZA65_RS22115	0.32	-0.2
4,781,400	+		DZA65_RS22115	0.32	+1.1
4,781,400	+		DZA65_RS22115	0.32	+0.5
4,781,400	+		DZA65_RS22115	0.32	-1.3
4,781,400	+		DZA65_RS22115	0.32	-0.6
4,781,475	+		DZA65_RS22115	0.41	+1.0
4,781,584	+		DZA65_RS22115	0.55	+0.3
4,781,584	+		DZA65_RS22115	0.55	-0.7
4,781,591	+		DZA65_RS22115	0.56	-1.0
4,781,591	+		DZA65_RS22115	0.56	+0.2
4,781,591	+		DZA65_RS22115	0.56	+1.0
4,781,591	+		DZA65_RS22115	0.56	-0.1
4,781,591	+		DZA65_RS22115	0.56	-0.0
4,781,591	+		DZA65_RS22115	0.56	+2.0
4,781,591	+		DZA65_RS22115	0.56	-1.2
4,781,591	+		DZA65_RS22115	0.56	-1.0
4,781,591	+		DZA65_RS22115	0.56	+0.5
4,781,591	+		DZA65_RS22115	0.56	+0.4
4,781,591	+		DZA65_RS22115	0.56	-1.0
4,781,591	+		DZA65_RS22115	0.56	-0.0
4,781,591	+		DZA65_RS22115	0.56	-1.0
4,781,591	+		DZA65_RS22115	0.56	+0.3
4,781,591	+		DZA65_RS22115	0.56	-0.0
4,781,591	+		DZA65_RS22115	0.56	-1.8
4,781,591	+		DZA65_RS22115	0.56	+2.3
4,781,591	+		DZA65_RS22115	0.56	+0.3
4,781,591	+		DZA65_RS22115	0.56	-0.6
4,781,591	+		DZA65_RS22115	0.56	+3.3
4,781,591	+		DZA65_RS22115	0.56	-0.3
4,781,591	+		DZA65_RS22115	0.56	-0.1
4,781,591	+		DZA65_RS22115	0.56	+1.3
4,781,591	+		DZA65_RS22115	0.56	-1.2
4,781,592	-		DZA65_RS22115	0.56	-1.3
4,781,592	-		DZA65_RS22115	0.56	+0.6
4,781,592	-		DZA65_RS22115	0.56	+0.5
4,781,592	-		DZA65_RS22115	0.56	+0.5
4,781,592	-		DZA65_RS22115	0.56	-0.1
4,781,592	-		DZA65_RS22115	0.56	+0.2
4,781,592	-		DZA65_RS22115	0.56	-1.3
4,781,592	-		DZA65_RS22115	0.56	-1.8
4,781,592	-		DZA65_RS22115	0.56	-0.1
4,781,592	-		DZA65_RS22115	0.56	+0.1
4,781,592	-		DZA65_RS22115	0.56	+0.4
4,781,592	-		DZA65_RS22115	0.56	-0.0
4,781,592	-		DZA65_RS22115	0.56	-0.0
4,781,592	-		DZA65_RS22115	0.56	-0.2
4,781,592	-		DZA65_RS22115	0.56	+1.3
4,781,592	-		DZA65_RS22115	0.56	+0.8
4,781,592	-		DZA65_RS22115	0.56	-1.0
4,781,592	-		DZA65_RS22115	0.56	+0.6
4,781,592	-		DZA65_RS22115	0.56	-1.5
4,781,592	-		DZA65_RS22115	0.56	-0.7
4,781,592	-		DZA65_RS22115	0.56	+1.4
4,781,592	-		DZA65_RS22115	0.56	-1.0
4,781,592	-		DZA65_RS22115	0.56	-1.3
4,781,592	-		DZA65_RS22115	0.56	-1.8
4,781,592	-		DZA65_RS22115	0.56	+0.2
4,781,593	+		DZA65_RS22115	0.56	-0.2
4,781,593	+		DZA65_RS22115	0.56	+0.4
4,781,594	-		DZA65_RS22115	0.56	-2.6
4,781,594	-		DZA65_RS22115	0.56	+0.4
4,781,655	+		DZA65_RS22115	0.64	-0.5
4,781,655	+		DZA65_RS22115	0.64	-1.0
4,781,656	-		DZA65_RS22115	0.64	+1.0
4,781,656	-		DZA65_RS22115	0.64	-1.6
4,781,656	-		DZA65_RS22115	0.64	-0.8
4,781,656	-		DZA65_RS22115	0.64	-0.2
4,781,656	-		DZA65_RS22115	0.64	+0.3
4,781,656	-		DZA65_RS22115	0.64	+0.7
4,781,664	+		DZA65_RS22115	0.65	-0.0
4,781,664	+		DZA65_RS22115	0.65	-0.4
4,781,664	+		DZA65_RS22115	0.65	+1.0
4,781,669	+		DZA65_RS22115	0.66	+1.4
4,781,669	+		DZA65_RS22115	0.66	+0.4
4,781,669	+		DZA65_RS22115	0.66	-0.3
4,781,670	-		DZA65_RS22115	0.66	-0.2
4,781,670	-		DZA65_RS22115	0.66	+0.3
4,781,670	-		DZA65_RS22115	0.66	+0.1
4,781,670	-		DZA65_RS22115	0.66	+1.8
4,781,670	-		DZA65_RS22115	0.66	-0.7
4,781,670	-		DZA65_RS22115	0.66	+0.4
4,781,706	+		DZA65_RS22115	0.70	+0.9
4,781,706	+		DZA65_RS22115	0.70	+0.7
4,781,707	-		DZA65_RS22115	0.71	+0.2
4,781,707	-		DZA65_RS22115	0.71	-0.1
4,781,707	-		DZA65_RS22115	0.71	-0.7
4,781,795	+		DZA65_RS22115	0.82	+1.3
4,781,795	+		DZA65_RS22115	0.82	+0.2
4,781,796	-		DZA65_RS22115	0.82	+1.0
4,781,796	-		DZA65_RS22115	0.82	-0.9
4,781,796	-		DZA65_RS22115	0.82	+0.3
4,781,796	-		DZA65_RS22115	0.82	-1.0
4,781,796	-		DZA65_RS22115	0.82	+0.5
4,781,853	+		DZA65_RS22115	0.89	-1.2
4,781,853	+		DZA65_RS22115	0.89	+0.1
4,781,854	-		DZA65_RS22115	0.89	+0.3
4,781,854	-		DZA65_RS22115	0.89	+0.1
4,781,854	-		DZA65_RS22115	0.89	-0.3
4,781,854	-		DZA65_RS22115	0.89	-1.6
4,781,854	-		DZA65_RS22115	0.89	-0.5
4,781,953	+				+1.7
4,781,991	+				+0.8
4,782,019	-		DZA65_RS22120	0.10	-1.0
4,782,080	+		DZA65_RS22120	0.20	-0.5
4,782,080	+		DZA65_RS22120	0.20	-0.0
4,782,081	-		DZA65_RS22120	0.20	-1.2
4,782,081	-		DZA65_RS22120	0.20	-0.7
4,782,081	-		DZA65_RS22120	0.20	+0.9
4,782,101	-		DZA65_RS22120	0.23	-0.4
4,782,173	+		DZA65_RS22120	0.34	-1.0
4,782,173	+		DZA65_RS22120	0.34	-0.3
4,782,174	-		DZA65_RS22120	0.34	-0.7
4,782,262	+		DZA65_RS22120	0.48	+0.1
4,782,263	-		DZA65_RS22120	0.48	-0.2
4,782,263	-		DZA65_RS22120	0.48	-1.0
4,782,263	-		DZA65_RS22120	0.48	-0.9
4,782,314	+		DZA65_RS22120	0.56	-1.3
4,782,314	+		DZA65_RS22120	0.56	-0.1
4,782,314	+		DZA65_RS22120	0.56	+1.7
4,782,315	-		DZA65_RS22120	0.56	-1.1
4,782,315	-		DZA65_RS22120	0.56	-1.2
4,782,315	-		DZA65_RS22120	0.56	+2.6
4,782,315	-		DZA65_RS22120	0.56	-0.7
4,782,335	+		DZA65_RS22120	0.59	+1.0
4,782,335	+		DZA65_RS22120	0.59	-0.3
4,782,335	+		DZA65_RS22120	0.59	+0.0
4,782,335	+		DZA65_RS22120	0.59	+1.0
4,782,335	+		DZA65_RS22120	0.59	-0.9
4,782,335	+		DZA65_RS22120	0.59	-1.6
4,782,335	+		DZA65_RS22120	0.59	-0.5
4,782,335	+		DZA65_RS22120	0.59	+0.3
4,782,335	+		DZA65_RS22120	0.59	+0.1
4,782,335	+		DZA65_RS22120	0.59	-0.5
4,782,335	+		DZA65_RS22120	0.59	-0.4
4,782,336	-		DZA65_RS22120	0.59	+0.8
4,782,336	-		DZA65_RS22120	0.59	-0.1
4,782,336	-		DZA65_RS22120	0.59	+1.9
4,782,336	-		DZA65_RS22120	0.59	+0.6
4,782,336	-		DZA65_RS22120	0.59	-0.5
4,782,336	-		DZA65_RS22120	0.59	+0.6
4,782,336	-				-0.0
4,782,336	-		DZA65_RS22120	0.59	+0.4
4,782,338	+		DZA65_RS22120	0.60	-1.6
4,782,338	+		DZA65_RS22120	0.60	-0.0
4,782,339	-		DZA65_RS22120	0.60	-0.6
4,782,339	-		DZA65_RS22120	0.60	+1.6
4,782,339	-		DZA65_RS22120	0.60	+0.3
4,782,392	+		DZA65_RS22120	0.68	-1.3
4,782,393	-		DZA65_RS22120	0.68	+1.0
4,782,393	-		DZA65_RS22120	0.68	-1.3
4,782,415	-		DZA65_RS22120	0.71	-0.3
4,782,415	-		DZA65_RS22120	0.71	-1.7
4,782,446	+		DZA65_RS22120	0.76	-0.0
4,782,447	-		DZA65_RS22120	0.76	-1.0
4,782,494	+		DZA65_RS22120	0.84	+0.2
4,782,494	+		DZA65_RS22120	0.84	+1.0
4,782,494	+		DZA65_RS22120	0.84	-0.3
4,782,494	+		DZA65_RS22120	0.84	-0.3
4,782,495	-		DZA65_RS22120	0.84	-0.4
4,782,495	-		DZA65_RS22120	0.84	-2.2
4,782,495	-		DZA65_RS22120	0.84	+0.3
4,782,495	-		DZA65_RS22120	0.84	-0.0
4,782,593	+				-0.3
4,782,593	+				+0.4
4,782,593	+				+0.5
4,782,593	+				+1.3
4,782,593	+				+1.0
4,782,594	-				+0.7
4,782,594	-				-0.3
4,782,594	-				+1.1
4,782,594	-				+0.9
4,782,596	+				-0.1
4,782,596	+				-1.6
4,782,596	+				+1.0
4,782,596	+				-1.6
4,782,599	+				-0.2
4,782,599	+				+1.1
4,782,600	-				+1.0
4,782,600	-				+1.2
4,782,600	-				+0.6
4,782,600	-				+0.4
4,782,652	+				+0.7
4,782,652	+				+0.3
4,782,652	+				-0.7
4,782,652	+				-0.0
4,782,653	-				-0.3
4,782,653	-				-1.0
4,782,657	-				+0.3
4,782,657	-				-0.2
4,782,657	-				+1.7
4,782,657	-				-0.8
4,782,657	-				+0.7
4,782,657	-				-1.6
4,782,657	-				-1.7
4,782,657	-				+0.8
4,782,657	-				+0.5
4,782,657	-				+1.0
4,782,694	+				+1.2
4,782,695	-				-1.8
4,782,703	+				+0.1
4,782,706	+				-0.3
4,782,706	+				+0.8
4,782,706	+				-0.3
4,782,707	-				+0.1
4,782,806	+				+2.0
4,782,834	-				-0.5
4,783,001	-				+0.5
4,783,006	+				-1.6
4,783,006	+				-0.5
4,783,007	-				+1.0
4,783,026	-				+0.2
4,783,122	+				-1.1
4,783,122	+				-1.0
4,783,122	+				+1.0
4,783,122	+				+2.3
4,783,123	-				+0.4
4,783,123	-				-0.1
4,783,123	-				+0.8
4,783,123	-				-0.4
4,783,126	-				-0.7
4,783,126	-				-0.4
4,783,126	-				+0.6
4,783,161	+				-0.7
4,783,161	+				+1.2
4,783,161	+				+0.4
4,783,161	+				+0.1
4,783,162	-				-0.0
4,783,188	-				+0.8
4,783,223	+				+0.4
4,783,223	+				-0.2
4,783,223	+				-1.0
4,783,223	+				+0.1
4,783,223	+				-0.0
4,783,223	+				+0.4
4,783,223	+				-0.3
4,783,223	+				-0.8
4,783,223	+				+0.8
4,783,223	+				+0.5
4,783,224	-				-0.3
4,783,224	-				-2.2
4,783,224	-				+0.2
4,783,224	-				+0.6
4,783,224	-				-0.6
4,783,224	-				-0.3
4,783,224	-				+0.5
4,783,224	-				+0.2
4,783,232	+				-1.0
4,783,232	+				-1.6
4,783,232	+				-0.5
4,783,233	-				+0.4
4,783,233	-				-1.4
4,783,295	-				-1.7
4,783,327	+				-1.0
4,783,327	+				+1.0
4,783,327	+				+0.5
4,783,327	+				-0.5
4,783,327	+				-0.2
4,783,327	+				+1.0
4,783,327	+				-2.2
4,783,327	+				-0.3
4,783,327	+				-0.1
4,783,327	+				-0.3
4,783,327	+				+0.4
4,783,327	+				+1.6
4,783,327	+				-0.4
4,783,328	-				-0.4
4,783,328	-				+0.5
4,783,328	-				-0.7
4,783,328	-				-0.4
4,783,328	-				-1.7
4,783,328	-				+2.3
4,783,328	-				+0.6
4,783,328	-				+0.4
4,783,328	-				-0.5
4,783,328	-				-0.5
4,783,328	-				+2.6
4,783,328	-				+0.7
4,783,328	-				-0.5
4,783,328	-				-0.6
4,783,330	-				-1.3
4,783,330	-				-0.4
4,783,330	-				-0.6
4,783,330	-				-0.0
4,783,330	-				-0.3
4,783,330	-				+0.6
4,783,330	-				+0.8
4,783,426	+				-0.0
4,783,443	+		DZA65_RS22130	0.11	+1.7
4,783,443	+		DZA65_RS22130	0.11	+1.1
4,783,443	+		DZA65_RS22130	0.11	-0.4
4,783,443	+		DZA65_RS22130	0.11	-0.7
4,783,443	+		DZA65_RS22130	0.11	-1.0
4,783,444	-		DZA65_RS22130	0.11	-0.3
4,783,444	-		DZA65_RS22130	0.11	+0.3
4,783,444	-		DZA65_RS22130	0.11	-0.3
4,783,444	-		DZA65_RS22130	0.11	-0.7
4,783,444	-		DZA65_RS22130	0.11	-0.0
4,783,444	-		DZA65_RS22130	0.11	-1.2
4,783,444	-		DZA65_RS22130	0.11	-0.2
4,783,444	-		DZA65_RS22130	0.11	+0.5
4,783,444	-		DZA65_RS22130	0.11	+1.0
4,783,444	-		DZA65_RS22130	0.11	-0.7
4,783,444	-		DZA65_RS22130	0.11	-2.6
4,783,444	-		DZA65_RS22130	0.11	-1.5
4,783,466	-		DZA65_RS22130	0.12	+0.4
4,783,524	+		DZA65_RS22130	0.15	+0.6
4,783,524	+		DZA65_RS22130	0.15	-0.8
4,783,524	+		DZA65_RS22130	0.15	+1.3
4,783,560	+		DZA65_RS22130	0.18	-2.0
4,783,560	+		DZA65_RS22130	0.18	-0.6
4,783,560	+		DZA65_RS22130	0.18	+0.5
4,783,560	+		DZA65_RS22130	0.18	-0.1
4,783,560	+		DZA65_RS22130	0.18	-0.5
4,783,560	+		DZA65_RS22130	0.18	-0.3
4,783,560	+		DZA65_RS22130	0.18	+0.9
4,783,560	+		DZA65_RS22130	0.18	-1.0
4,783,560	+		DZA65_RS22130	0.18	-1.8
4,783,560	+		DZA65_RS22130	0.18	-0.0
4,783,561	-		DZA65_RS22130	0.18	+1.2
4,783,561	-		DZA65_RS22130	0.18	+1.0
4,783,561	-		DZA65_RS22130	0.18	+0.3
4,783,561	-		DZA65_RS22130	0.18	-0.5