Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21930

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,742,580	+		DZA65_RS21925	0.40	-1.3
4,742,580	+		DZA65_RS21925	0.40	+0.3
4,742,580	+		DZA65_RS21925	0.40	+0.3
4,742,580	+		DZA65_RS21925	0.40	+0.1
4,742,581	-		DZA65_RS21925	0.40	+0.3
4,742,581	-		DZA65_RS21925	0.40	-1.6
4,742,581	-		DZA65_RS21925	0.40	-1.7
4,742,581	-		DZA65_RS21925	0.40	-0.4
4,742,637	-		DZA65_RS21925	0.44	-0.6
4,742,658	+		DZA65_RS21925	0.45	-0.8
4,742,691	+		DZA65_RS21925	0.48	-0.6
4,742,691	+		DZA65_RS21925	0.48	-0.0
4,742,691	+		DZA65_RS21925	0.48	+0.6
4,742,691	+		DZA65_RS21925	0.48	-1.6
4,742,691	+		DZA65_RS21925	0.48	+2.0
4,742,691	+		DZA65_RS21925	0.48	-0.3
4,742,691	+		DZA65_RS21925	0.48	-1.3
4,742,692	-		DZA65_RS21925	0.48	-0.0
4,742,692	-		DZA65_RS21925	0.48	+1.0
4,742,692	-		DZA65_RS21925	0.48	-1.8
4,742,692	-		DZA65_RS21925	0.48	-0.0
4,742,692	-		DZA65_RS21925	0.48	+2.1
4,742,692	-		DZA65_RS21925	0.48	+1.0
4,742,692	-		DZA65_RS21925	0.48	-2.1
4,742,692	-		DZA65_RS21925	0.48	-0.4
4,742,692	-		DZA65_RS21925	0.48	+2.0
4,742,692	-		DZA65_RS21925	0.48	+2.0
4,742,945	+		DZA65_RS21925	0.67	+0.2
4,742,945	+		DZA65_RS21925	0.67	-0.2
4,742,945	+		DZA65_RS21925	0.67	-1.3
4,742,945	+		DZA65_RS21925	0.67	-1.6
4,742,946	-		DZA65_RS21925	0.67	-1.3
4,742,946	-		DZA65_RS21925	0.67	-0.4
4,742,946	-		DZA65_RS21925	0.67	-1.3
4,742,992	-		DZA65_RS21925	0.70	-0.9
4,743,003	-		DZA65_RS21925	0.71	+1.8
4,743,039	+		DZA65_RS21925	0.74	+1.7
4,743,039	+		DZA65_RS21925	0.74	+0.1
4,743,039	+		DZA65_RS21925	0.74	+0.8
4,743,039	+		DZA65_RS21925	0.74	+0.1
4,743,039	+		DZA65_RS21925	0.74	-0.0
4,743,096	+		DZA65_RS21925	0.78	+0.0
4,743,096	+				+0.7
4,743,096	+		DZA65_RS21925	0.78	-0.2
4,743,096	+		DZA65_RS21925	0.78	+0.4
4,743,096	+		DZA65_RS21925	0.78	+1.6
4,743,096	+		DZA65_RS21925	0.78	+1.0
4,743,096	+		DZA65_RS21925	0.78	-1.0
4,743,096	+		DZA65_RS21925	0.78	+1.0
4,743,097	-		DZA65_RS21925	0.78	+0.1
4,743,097	-		DZA65_RS21925	0.78	-0.0
4,743,097	-		DZA65_RS21925	0.78	+0.3
4,743,097	-		DZA65_RS21925	0.78	+0.4
4,743,097	-		DZA65_RS21925	0.78	-0.7
4,743,097	-		DZA65_RS21925	0.78	-0.6
4,743,097	-		DZA65_RS21925	0.78	+1.7
4,743,097	-		DZA65_RS21925	0.78	-1.7
4,743,202	-		DZA65_RS21925	0.86	+2.0
4,743,202	-		DZA65_RS21925	0.86	-0.4
4,743,202	-		DZA65_RS21925	0.86	+1.2
4,743,202	-		DZA65_RS21925	0.86	-0.4
4,743,213	+		DZA65_RS21925	0.87	-0.0
4,743,213	+		DZA65_RS21925	0.87	+0.2
4,743,213	+		DZA65_RS21925	0.87	+1.5
4,743,213	+		DZA65_RS21925	0.87	+0.8
4,743,213	+		DZA65_RS21925	0.87	-0.5
4,743,213	+		DZA65_RS21925	0.87	-1.3
4,743,214	-		DZA65_RS21925	0.87	-0.3
4,743,214	-		DZA65_RS21925	0.87	+1.0
4,743,299	+				-0.3
4,743,299	+				-1.2
4,743,299	+				-1.1
4,743,299	+				-0.4
4,743,299	+				-0.0
4,743,299	+				-0.2
4,743,300	-				+0.4
4,743,300	-				-0.5
4,743,390	+				-0.1
4,743,390	+				+0.5
4,743,409	+				+0.7
4,743,409	+				+0.5
4,743,410	-				-0.3
4,743,410	-				-0.0
4,743,448	+				-0.2
4,743,449	-				+0.6
4,743,498	+				+0.6
4,743,507	+				-0.4
4,743,540	-				-0.7
4,743,552	+				+1.6
4,743,552	+				+0.7
4,743,552	+				-0.9
4,743,553	-				-1.6
4,743,553	-				-0.6
4,743,576	+				+2.0
4,743,576	+		DZA65_RS21930	0.11	-0.3
4,743,616	-		DZA65_RS21930	0.16	-1.3
4,743,624	+		DZA65_RS21930	0.18	-1.2
4,743,624	+		DZA65_RS21930	0.18	-0.4
4,743,912	+		DZA65_RS21930	0.57	+1.3
4,743,912	+		DZA65_RS21930	0.57	-0.0
4,743,912	+		DZA65_RS21930	0.57	+0.4
4,743,913	-				+0.4
4,743,913	-		DZA65_RS21930	0.58	+0.6
4,743,913	-		DZA65_RS21930	0.58	-1.0
4,743,927	+		DZA65_RS21930	0.59	+0.6
4,743,927	+		DZA65_RS21930	0.59	-1.1
4,743,928	-		DZA65_RS21930	0.60	-0.6
4,743,928	-		DZA65_RS21930	0.60	+0.0
4,743,928	-		DZA65_RS21930	0.60	+0.7
4,743,949	+		DZA65_RS21930	0.63	-0.2
4,743,949	+		DZA65_RS21930	0.63	+1.4
4,743,949	+		DZA65_RS21930	0.63	-0.8
4,743,949	+		DZA65_RS21930	0.63	-0.7
4,743,949	+		DZA65_RS21930	0.63	-0.6
4,743,950	-		DZA65_RS21930	0.63	-0.1
4,743,950	-		DZA65_RS21930	0.63	-0.4
4,743,950	-		DZA65_RS21930	0.63	-0.0
4,743,950	-		DZA65_RS21930	0.63	+2.0
4,743,950	-		DZA65_RS21930	0.63	+0.1
4,743,950	-		DZA65_RS21930	0.63	+1.0
4,743,950	-		DZA65_RS21930	0.63	+0.6
4,743,950	-		DZA65_RS21930	0.63	-0.0
4,743,950	-		DZA65_RS21930	0.63	-0.3
4,743,950	-		DZA65_RS21930	0.63	+0.3
4,743,951	+		DZA65_RS21930	0.63	+0.3
4,743,951	+		DZA65_RS21930	0.63	-1.6
4,743,951	+		DZA65_RS21930	0.63	-0.8
4,743,951	+		DZA65_RS21930	0.63	-0.0
4,743,951	+		DZA65_RS21930	0.63	-1.3
4,743,951	+		DZA65_RS21930	0.63	-0.2
4,743,951	+		DZA65_RS21930	0.63	-1.0
4,743,951	+		DZA65_RS21930	0.63	-0.0
4,743,951	+		DZA65_RS21930	0.63	-1.6
4,743,951	+		DZA65_RS21930	0.63	-0.3
4,743,952	-		DZA65_RS21930	0.63	-0.6
4,743,952	-		DZA65_RS21930	0.63	-1.3
4,743,952	-				+0.4
4,743,952	-		DZA65_RS21930	0.63	-0.7
4,743,952	-		DZA65_RS21930	0.63	-0.0
4,743,952	-		DZA65_RS21930	0.63	-0.6
4,743,952	-		DZA65_RS21930	0.63	+0.7
4,743,952	-		DZA65_RS21930	0.63	-0.6
4,743,952	-		DZA65_RS21930	0.63	+0.9
4,744,047	+		DZA65_RS21930	0.76	-0.0
4,744,047	+		DZA65_RS21930	0.76	+1.0
4,744,047	+		DZA65_RS21930	0.76	-0.8
4,744,047	+		DZA65_RS21930	0.76	+0.7
4,744,047	+		DZA65_RS21930	0.76	-0.1
4,744,047	+		DZA65_RS21930	0.76	+2.0
4,744,047	+		DZA65_RS21930	0.76	+0.5
4,744,047	+		DZA65_RS21930	0.76	-0.6
4,744,047	+		DZA65_RS21930	0.76	-2.8
4,744,047	+		DZA65_RS21930	0.76	-0.8
4,744,047	+		DZA65_RS21930	0.76	-0.6
4,744,047	+		DZA65_RS21930	0.76	-2.5
4,744,048	-		DZA65_RS21930	0.76	+1.6
4,744,048	-		DZA65_RS21930	0.76	-1.1
4,744,048	-				-1.0
4,744,048	-		DZA65_RS21930	0.76	-3.0
4,744,048	-		DZA65_RS21930	0.76	+1.3
4,744,048	-		DZA65_RS21930	0.76	+0.6
4,744,048	-		DZA65_RS21930	0.76	+0.3
4,744,048	-		DZA65_RS21930	0.76	-1.5
4,744,048	-		DZA65_RS21930	0.76	-1.5
4,744,048	-		DZA65_RS21930	0.76	-0.3
4,744,048	-		DZA65_RS21930	0.76	-0.0
4,744,048	-		DZA65_RS21930	0.76	+0.8
4,744,139	-		DZA65_RS21930	0.89	-0.0
4,744,139	-		DZA65_RS21930	0.89	+1.4
4,744,161	+				-2.9
4,744,168	+				-0.6
4,744,168	+				+0.7
4,744,168	+				-0.3
4,744,168	+				+0.6
4,744,168	+				-0.8
4,744,168	+				-0.8
4,744,168	+				+0.1
4,744,169	-				-0.9
4,744,169	-				+0.2
4,744,169	-				-1.1
4,744,169	-				-0.3
4,744,169	-				-0.8
4,744,169	-				-0.5
4,744,204	+				-1.6
4,744,204	+				+1.8
4,744,204	+				+0.0
4,744,205	-				-0.9
4,744,205	-				+1.7
4,744,205	-				-3.3
4,744,205	-				-0.4
4,744,208	+				+1.3
4,744,208	+				-0.3
4,744,208	+				-0.0
4,744,208	+				-0.2
4,744,208	+				-0.3
4,744,208	+				+0.7
4,744,209	-				-2.5
4,744,209	-				-0.8
4,744,209	-				-0.4
4,744,214	+				-1.9
4,744,214	+				+1.0
4,744,214	+				+1.7
4,744,214	+				+0.3
4,744,214	+				-1.2
4,744,214	+				-0.9
4,744,214	+				+0.9
4,744,214	+				+0.4
4,744,214	+				-0.9
4,744,215	-				+1.8
4,744,215	-				-0.4
4,744,215	-				-0.0
4,744,215	-				-2.3
4,744,215	-				-0.2
4,744,215	-				+1.1
4,744,215	-				-0.9
4,744,215	-				+0.4
4,744,215	-				+1.6
4,744,215	-				+0.6
4,744,233	+				-0.0
4,744,234	-				+2.9
4,744,234	-				+0.5
4,744,287	+				+1.0
4,744,287	+				-0.6
4,744,287	+				-0.6
4,744,287	+				+0.1
4,744,287	+				+0.2
4,744,288	-				+1.0
4,744,288	-				-1.0
4,744,288	-				-1.8
4,744,288	-				+1.0
4,744,288	-				-0.4
4,744,288	-				-0.4
4,744,288	-				-1.5
4,744,354	-				-0.0
4,744,354	-				-0.0
4,744,354	-				+0.2
4,744,354	-				+0.5
4,744,453	+		DZA65_RS21935	0.14	-0.6
4,744,453	+		DZA65_RS21935	0.14	+0.4
4,744,454	-		DZA65_RS21935	0.14	+0.7
4,744,454	-		DZA65_RS21935	0.14	-1.0
4,744,454	-		DZA65_RS21935	0.14	-0.7
4,744,460	+		DZA65_RS21935	0.14	+0.4
4,744,460	+		DZA65_RS21935	0.14	-1.1
4,744,460	+		DZA65_RS21935	0.14	+0.8
4,744,460	+		DZA65_RS21935	0.14	+0.2
4,744,460	+		DZA65_RS21935	0.14	+0.4
4,744,460	+		DZA65_RS21935	0.14	+1.0
4,744,460	+		DZA65_RS21935	0.14	+0.4
4,744,460	+		DZA65_RS21935	0.14	+0.7
4,744,461	-		DZA65_RS21935	0.14	+0.2
4,744,461	-		DZA65_RS21935	0.14	+0.2
4,744,461	-		DZA65_RS21935	0.14	+0.5
4,744,461	-		DZA65_RS21935	0.14	+1.0
4,744,461	-		DZA65_RS21935	0.14	+0.5
4,744,461	-		DZA65_RS21935	0.14	-1.9
4,744,591	+		DZA65_RS21935	0.22	-1.3
4,744,628	-		DZA65_RS21935	0.25	+0.3
4,744,628	-		DZA65_RS21935	0.25	-1.3
4,744,628	-		DZA65_RS21935	0.25	+1.0
4,744,726	-		DZA65_RS21935	0.31	-0.6
4,744,729	+		DZA65_RS21935	0.31	+1.0
4,744,730	-		DZA65_RS21935	0.31	-1.6
4,744,730	-		DZA65_RS21935	0.31	-1.2
4,744,743	-		DZA65_RS21935	0.32	-1.0
4,744,747	+		DZA65_RS21935	0.32	-0.6
4,744,747	+		DZA65_RS21935	0.32	+0.7
4,744,748	-		DZA65_RS21935	0.32	+1.0
4,744,749	+		DZA65_RS21935	0.32	-0.3
4,744,749	+		DZA65_RS21935	0.32	-1.0
4,744,750	-		DZA65_RS21935	0.32	+0.9
4,744,767	+		DZA65_RS21935	0.33	-0.8
4,744,768	-		DZA65_RS21935	0.33	+1.6
4,744,770	+		DZA65_RS21935	0.33	-0.9
4,744,770	+		DZA65_RS21935	0.33	+0.7
4,744,771	-		DZA65_RS21935	0.33	-0.3
4,744,771	-		DZA65_RS21935	0.33	+0.0
4,744,771	-		DZA65_RS21935	0.33	-1.3
4,744,807	+		DZA65_RS21935	0.36	+0.1
4,744,807	+		DZA65_RS21935	0.36	-1.6
4,744,808	-		DZA65_RS21935	0.36	+0.8
4,744,808	-		DZA65_RS21935	0.36	-0.0
4,744,808	-		DZA65_RS21935	0.36	-0.2
4,744,848	+		DZA65_RS21935	0.38	-0.3
4,744,848	+		DZA65_RS21935	0.38	-0.8
4,744,848	+		DZA65_RS21935	0.38	+1.0
4,744,851	+		DZA65_RS21935	0.38	-0.5
4,744,852	-		DZA65_RS21935	0.38	-0.4
4,744,852	-		DZA65_RS21935	0.38	-1.6
4,744,852	-		DZA65_RS21935	0.38	-0.6
4,744,852	-		DZA65_RS21935	0.38	-0.6
4,744,984	+		DZA65_RS21935	0.47	-1.0
4,744,985	-		DZA65_RS21935	0.47	-0.8
4,744,985	-		DZA65_RS21935	0.47	+0.7
4,745,173	+				+0.4
4,745,173	+		DZA65_RS21935	0.58	+0.4
4,745,173	+		DZA65_RS21935	0.58	-0.2
4,745,174	-		DZA65_RS21935	0.58	-2.9
4,745,174	-		DZA65_RS21935	0.58	+0.3