Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21785

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,709,460	+		DZA65_RS21770	0.75	+0.6
4,709,460	+		DZA65_RS21770	0.75	+1.6
4,709,460	+		DZA65_RS21770	0.75	+0.3
4,709,460	+		DZA65_RS21770	0.75	+0.3
4,709,460	+		DZA65_RS21770	0.75	+0.4
4,709,460	+		DZA65_RS21770	0.75	-0.2
4,709,460	+		DZA65_RS21770	0.75	+0.8
4,709,460	+		DZA65_RS21770	0.75	-0.6
4,709,460	+		DZA65_RS21770	0.75	-1.0
4,709,460	+				-1.3
4,709,461	-		DZA65_RS21770	0.76	-1.4
4,709,461	-		DZA65_RS21770	0.76	-0.4
4,709,461	-		DZA65_RS21770	0.76	+0.5
4,709,461	-		DZA65_RS21770	0.76	+0.6
4,709,461	-		DZA65_RS21770	0.76	-0.8
4,709,461	-		DZA65_RS21770	0.76	+0.4
4,709,461	-		DZA65_RS21770	0.76	+0.8
4,709,461	-		DZA65_RS21770	0.76	-1.3
4,709,462	+		DZA65_RS21770	0.76	-2.7
4,709,556	+				-0.1
4,709,556	+				-1.1
4,709,556	+				+0.8
4,709,556	+				+0.2
4,709,556	+				-2.6
4,709,556	+				-0.8
4,709,556	+				-0.0
4,709,556	+				-0.7
4,709,556	+				-0.8
4,709,556	+				-0.1
4,709,557	-				-0.0
4,709,557	-				-0.8
4,709,557	-				-1.6
4,709,557	-				-1.6
4,709,557	-				-0.6
4,709,557	-				-1.2
4,709,557	-				-2.9
4,709,557	-				-0.4
4,709,557	-				+0.7
4,709,558	+				-0.0
4,709,558	+				+0.1
4,709,559	-				+0.2
4,709,624	+				-0.0
4,709,639	+		DZA65_RS21775	0.15	+1.7
4,709,657	+		DZA65_RS21775	0.21	+0.2
4,709,658	-		DZA65_RS21775	0.22	-1.0
4,709,658	-		DZA65_RS21775	0.22	-1.2
4,709,664	+		DZA65_RS21775	0.24	-1.9
4,709,664	+		DZA65_RS21775	0.24	-0.1
4,709,665	-		DZA65_RS21775	0.24	+1.0
4,709,718	+		DZA65_RS21775	0.42	-1.0
4,709,718	+		DZA65_RS21775	0.42	+1.7
4,709,718	+		DZA65_RS21775	0.42	+0.4
4,709,718	+		DZA65_RS21775	0.42	+0.5
4,709,718	+		DZA65_RS21775	0.42	+1.6
4,709,719	-		DZA65_RS21775	0.43	-0.6
4,709,719	-		DZA65_RS21775	0.43	-0.4
4,709,719	-		DZA65_RS21775	0.43	+1.4
4,709,754	-		DZA65_RS21775	0.55	+2.7
4,709,769	+		DZA65_RS21775	0.60	+2.0
4,709,769	+		DZA65_RS21775	0.60	+0.6
4,709,770	-		DZA65_RS21775	0.60	-1.2
4,709,808	+		DZA65_RS21775	0.74	+0.4
4,709,808	+		DZA65_RS21775	0.74	+1.5
4,709,871	+				+1.3
4,709,872	-				+0.8
4,710,000	+		DZA65_RS21780	0.17	-1.7
4,710,001	-		DZA65_RS21780	0.18	-0.5
4,710,001	-		DZA65_RS21780	0.18	+0.2
4,710,001	-		DZA65_RS21780	0.18	-0.9
4,710,063	+		DZA65_RS21780	0.37	+0.5
4,710,064	-		DZA65_RS21780	0.37	-0.5
4,710,064	-		DZA65_RS21780	0.37	-2.5
4,710,064	-		DZA65_RS21780	0.37	-1.6
4,710,064	-		DZA65_RS21780	0.37	+0.6
4,710,064	-		DZA65_RS21780	0.37	-0.9
4,710,064	-		DZA65_RS21780	0.37	-2.3
4,710,065	+		DZA65_RS21780	0.37	+0.7
4,710,065	+		DZA65_RS21780	0.37	+0.5
4,710,065	+		DZA65_RS21780	0.37	-0.0
4,710,065	+		DZA65_RS21780	0.37	+0.6
4,710,065	+		DZA65_RS21780	0.37	-0.1
4,710,065	+		DZA65_RS21780	0.37	+0.1
4,710,065	+		DZA65_RS21780	0.37	+0.3
4,710,065	+		DZA65_RS21780	0.37	+1.3
4,710,065	+		DZA65_RS21780	0.37	-0.0
4,710,065	+		DZA65_RS21780	0.37	-1.7
4,710,065	+		DZA65_RS21780	0.37	+0.6
4,710,065	+		DZA65_RS21780	0.37	-0.4
4,710,066	-		DZA65_RS21780	0.38	+1.2
4,710,066	-		DZA65_RS21780	0.38	+0.3
4,710,066	-		DZA65_RS21780	0.38	+0.9
4,710,066	-		DZA65_RS21780	0.38	-0.0
4,710,066	-		DZA65_RS21780	0.38	-0.7
4,710,066	-		DZA65_RS21780	0.38	-0.7
4,710,066	-		DZA65_RS21780	0.38	-0.3
4,710,066	-		DZA65_RS21780	0.38	-1.3
4,710,066	-		DZA65_RS21780	0.38	-1.1
4,710,066	-		DZA65_RS21780	0.38	-0.2
4,710,066	-		DZA65_RS21780	0.38	-2.0
4,710,066	-		DZA65_RS21780	0.38	-1.1
4,710,066	-		DZA65_RS21780	0.38	+1.0
4,710,066	-		DZA65_RS21780	0.38	+0.8
4,710,166	-		DZA65_RS21780	0.69	-1.0
4,710,166	-		DZA65_RS21780	0.69	+0.6
4,710,203	+		DZA65_RS21780	0.80	+2.6
4,710,203	+		DZA65_RS21780	0.80	-1.2
4,710,203	+		DZA65_RS21780	0.80	+1.0
4,710,203	+		DZA65_RS21780	0.80	+1.2
4,710,203	+		DZA65_RS21780	0.80	-0.1
4,710,203	+		DZA65_RS21780	0.80	+1.1
4,710,203	+		DZA65_RS21780	0.80	-0.3
4,710,203	+		DZA65_RS21780	0.80	-0.3
4,710,203	+		DZA65_RS21780	0.80	-0.9
4,710,203	+		DZA65_RS21780	0.80	+0.6
4,710,203	+		DZA65_RS21780	0.80	+0.6
4,710,203	+		DZA65_RS21780	0.80	-1.3
4,710,203	+		DZA65_RS21780	0.80	+0.2
4,710,203	+		DZA65_RS21780	0.80	-0.2
4,710,203	+		DZA65_RS21780	0.80	-0.8
4,710,203	+		DZA65_RS21780	0.80	-2.0
4,710,203	+		DZA65_RS21780	0.80	-0.4
4,710,204	-		DZA65_RS21780	0.80	-0.5
4,710,204	-		DZA65_RS21780	0.80	-0.5
4,710,204	-		DZA65_RS21780	0.80	+1.0
4,710,204	-		DZA65_RS21780	0.80	+0.2
4,710,204	-		DZA65_RS21780	0.80	-0.7
4,710,204	-		DZA65_RS21780	0.80	+0.3
4,710,204	-		DZA65_RS21780	0.80	-0.0
4,710,204	-		DZA65_RS21780	0.80	-1.8
4,710,204	-		DZA65_RS21780	0.80	+0.1
4,710,204	-		DZA65_RS21780	0.80	+0.6
4,710,204	-		DZA65_RS21780	0.80	-2.7
4,710,204	-		DZA65_RS21780	0.80	+1.7
4,710,204	-		DZA65_RS21780	0.80	+0.5
4,710,204	-		DZA65_RS21780	0.80	-0.0
4,710,204	-		DZA65_RS21780	0.80	+0.4
4,710,204	-		DZA65_RS21780	0.80	-0.2
4,710,204	-		DZA65_RS21780	0.80	-0.4
4,710,204	-		DZA65_RS21780	0.80	-1.5
4,710,212	+		DZA65_RS21780	0.83	-0.8
4,710,212	+		DZA65_RS21780	0.83	-0.8
4,710,212	+		DZA65_RS21780	0.83	-0.2
4,710,212	+		DZA65_RS21780	0.83	+1.8
4,710,212	+		DZA65_RS21780	0.83	-0.0
4,710,212	+		DZA65_RS21780	0.83	-1.6
4,710,212	+		DZA65_RS21780	0.83	+1.0
4,710,212	+		DZA65_RS21780	0.83	-1.0
4,710,213	-		DZA65_RS21780	0.83	+0.6
4,710,213	-		DZA65_RS21780	0.83	+1.6
4,710,213	-		DZA65_RS21780	0.83	+1.0
4,710,213	-		DZA65_RS21780	0.83	-1.2
4,710,229	+		DZA65_RS21780	0.88	-1.2
4,710,230	-		DZA65_RS21780	0.88	+0.2
4,710,230	-		DZA65_RS21780	0.88	-1.0
4,710,250	+				+0.7
4,710,250	+				+0.8
4,710,306	+				+0.4
4,710,306	+				+0.3
4,710,306	+				+1.6
4,710,306	+				+1.3
4,710,307	-				-0.8
4,710,307	-				+0.6
4,710,335	+				+1.0
4,710,335	+				+1.5
4,710,335	+				-0.6
4,710,335	+				+0.5
4,710,335	+				-1.3
4,710,335	+				-0.2
4,710,335	+				+2.9
4,710,335	+				-1.1
4,710,335	+				-0.5
4,710,335	+				-0.0
4,710,335	+				-1.0
4,710,335	+				-1.0
4,710,335	+				-0.2
4,710,335	+				-0.2
4,710,335	+				-1.3
4,710,335	+				+0.7
4,710,336	-				-0.7
4,710,336	-				+0.1
4,710,336	-				-0.3
4,710,336	-				-1.4
4,710,336	-				-0.8
4,710,336	-				+0.0
4,710,336	-				+1.5
4,710,336	-				+1.2
4,710,336	-				-1.3
4,710,336	-				+1.3
4,710,336	-				-1.3
4,710,336	-				+1.0
4,710,336	-				-0.3
4,710,336	-				-1.9
4,710,336	-				+1.7
4,710,336	-				+3.0
4,710,447	-				+1.3
4,710,447	-				+0.7
4,710,457	+				+0.1
4,710,457	+				+0.2
4,710,457	+				-0.4
4,710,457	+				-0.5
4,710,457	+				-2.2
4,710,457	+				-0.5
4,710,457	+				-1.6
4,710,457	+				-1.3
4,710,457	+				-0.4
4,710,457	+				+2.0
4,710,457	+				+0.5
4,710,457	+				-0.2
4,710,457	+				+0.2
4,710,458	-				-1.1
4,710,458	-				-2.1
4,710,458	-				+0.7
4,710,458	-				-1.9
4,710,458	-				-0.2
4,710,458	-				-1.0
4,710,458	-				-0.3
4,710,458	-				+1.0
4,710,458	-				-1.2
4,710,458	-				+0.2
4,710,458	-				+0.8
4,710,458	-				-0.6
4,710,458	-				-1.1
4,710,458	-				-0.0
4,710,458	-				-0.9
4,710,458	-				-0.3
4,710,458	-				+0.7
4,710,458	-				+2.2
4,710,458	-				+0.7
4,710,458	-				-0.1
4,710,458	-				+0.5
4,710,481	-				-0.2
4,710,500	+				-1.1
4,710,500	+				+0.3
4,710,500	+				-1.2
4,710,500	+				-0.1
4,710,500	+				-1.3
4,710,500	+				+1.7
4,710,500	+				-1.3
4,710,500	+				-0.8
4,710,501	-				+2.8
4,710,501	-				+0.2
4,710,501	-				-2.5
4,710,501	-				+0.1
4,710,547	+		DZA65_RS21785	0.14	+0.7
4,710,547	+		DZA65_RS21785	0.14	-1.4
4,710,615	-		DZA65_RS21785	0.25	+1.3
4,710,704	+		DZA65_RS21785	0.39	+0.7
4,710,704	+		DZA65_RS21785	0.39	-0.0
4,710,704	+		DZA65_RS21785	0.39	-0.3
4,710,705	-		DZA65_RS21785	0.39	+2.4
4,710,705	-		DZA65_RS21785	0.39	+0.2
4,710,705	-		DZA65_RS21785	0.39	+0.7
4,710,725	+		DZA65_RS21785	0.42	+0.2
4,710,725	+		DZA65_RS21785	0.42	+1.0
4,710,725	+		DZA65_RS21785	0.42	-0.7
4,710,725	+		DZA65_RS21785	0.42	+0.3
4,710,725	+		DZA65_RS21785	0.42	-0.4
4,710,725	+		DZA65_RS21785	0.42	+0.8
4,710,725	+		DZA65_RS21785	0.42	+0.7
4,710,725	+		DZA65_RS21785	0.42	-1.3
4,710,726	-		DZA65_RS21785	0.43	+2.0
4,710,726	-		DZA65_RS21785	0.43	-0.2
4,710,794	-		DZA65_RS21785	0.53	-1.0
4,710,794	-		DZA65_RS21785	0.53	+0.9
4,710,794	-		DZA65_RS21785	0.53	-0.8
4,710,794	-		DZA65_RS21785	0.53	+0.6
4,710,820	-		DZA65_RS21785	0.57	+0.6
4,710,908	+		DZA65_RS21785	0.71	+0.7
4,710,908	+		DZA65_RS21785	0.71	+0.5
4,710,908	+		DZA65_RS21785	0.71	-0.0
4,710,908	+		DZA65_RS21785	0.71	+1.0
4,710,908	+		DZA65_RS21785	0.71	+0.6
4,710,908	+		DZA65_RS21785	0.71	-0.3
4,710,908	+		DZA65_RS21785	0.71	+0.2
4,710,909	-		DZA65_RS21785	0.72	+1.0
4,710,909	-		DZA65_RS21785	0.72	-0.3
4,710,909	-		DZA65_RS21785	0.72	+1.3
4,710,909	-		DZA65_RS21785	0.72	-1.6
4,710,963	+		DZA65_RS21785	0.80	-0.2
4,710,963	+		DZA65_RS21785	0.80	+0.8
4,710,963	+		DZA65_RS21785	0.80	-0.5
4,710,963	+		DZA65_RS21785	0.80	+0.1
4,710,963	+		DZA65_RS21785	0.80	+1.8
4,710,963	+		DZA65_RS21785	0.80	+0.8
4,711,043	+				-2.0
4,711,043	+				-0.7
4,711,062	+				-1.3
4,711,062	+				+1.0
4,711,063	-				-0.8
4,711,063	-				-2.9
4,711,063	-				-1.8
4,711,063	-				-0.9
4,711,063	-				-0.7
4,711,063	-				+1.0
4,711,063	-				+0.1
4,711,065	+				+0.1
4,711,065	+				-0.0
4,711,065	+				-0.8
4,711,066	-				+1.6
4,711,066	-				-0.1
4,711,079	+				+0.9
4,711,079	+				-0.6
4,711,079	+				+0.4
4,711,079	+				-0.7
4,711,079	+				-0.2
4,711,079	+				-0.2
4,711,079	+				+0.1
4,711,079	+				-0.6
4,711,079	+				-0.0
4,711,079	+				+2.3
4,711,079	+				-0.0
4,711,079	+				-1.0
4,711,079	+				-0.2
4,711,079	+				+0.5
4,711,079	+				+0.2
4,711,080	-				-0.1
4,711,080	-				+0.6
4,711,080	-				-0.6
4,711,080	-				+2.7
4,711,080	-				-1.3
4,711,081	+				-0.8
4,711,081	+				-0.3
4,711,081	+				-0.9
4,711,081	+				-1.5
4,711,081	+				-0.6
4,711,081	+				-0.0
4,711,081	+				-0.0
4,711,082	-				-0.5
4,711,082	-				-0.3
4,711,082	-				-0.3
4,711,082	-				+0.2
4,711,082	-				-1.0
4,711,082	-				+0.4
4,711,085	+				-1.3
4,711,085	+				+0.1
4,711,085	+				+1.0
4,711,085	+				-0.0
4,711,086	-				-0.2
4,711,086	-				-0.5
4,711,086	-				-1.4
4,711,086	-				+0.2
4,711,086	-				+4.2
4,711,203	+		DZA65_RS21790	0.29	-1.3
4,711,203	+		DZA65_RS21790	0.29	-1.2
4,711,204	-		DZA65_RS21790	0.29	-2.3
4,711,204	-		DZA65_RS21790	0.29	-0.6
4,711,204	-		DZA65_RS21790	0.29	-1.3
4,711,204	-		DZA65_RS21790	0.29	-0.8
4,711,205	+		DZA65_RS21790	0.30	-1.6
4,711,206	-		DZA65_RS21790	0.30	-1.4
4,711,309	+				-0.6
4,711,420	+				+0.4
4,711,420	+				+0.6
4,711,421	-				+1.0
4,711,421	-				-2.0
4,711,421	-				-0.6
4,711,425	+				-2.5
4,711,425	+				+1.0
4,711,425	+				-0.0
4,711,426	-				+0.1
4,711,426	-				-0.0
4,711,426	-				-1.6
4,711,465	+				-0.6
4,711,466	-				+1.0
4,711,466	-				-1.6
4,711,469	+				-0.7
4,711,469	+				-0.1
4,711,469	+				-1.2
4,711,470	-				+1.6
4,711,478	+				-1.8
4,711,479	-				-1.0
4,711,479	-				-0.3
4,711,490	+				-1.5
4,711,491	-				+1.7
4,711,524	-				-0.6
4,711,539	+				+0.8
4,711,539	+				-0.7
4,711,557	+				-0.7
4,711,557	+				+0.5
4,711,557	+				-0.2
4,711,557	+				-0.4
4,711,557	+				-0.3
4,711,557	+				+1.0
4,711,557	+				-0.7
4,711,557	+				-0.4
4,711,557	+				-0.6
4,711,557	+				-1.0
4,711,557	+				-0.0
4,711,557	+				-0.8
4,711,557	+				+1.0
4,711,557	+				+0.4
4,711,558	-				+1.0
4,711,558	-				-0.0
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4,712,009	-		DZA65_RS21795	0.40	-0.0
4,712,009	-		DZA65_RS21795	0.40	-1.1
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4,712,009	-		DZA65_RS21795	0.40	+0.6
4,712,009	-		DZA65_RS21795	0.40	+0.5
4,712,009	-		DZA65_RS21795	0.40	+0.8
4,712,009	-		DZA65_RS21795	0.40	+1.3
4,712,031	+		DZA65_RS21795	0.44	+0.1
4,712,032	-		DZA65_RS21795	0.44	-0.3
4,712,032	-		DZA65_RS21795	0.44	+0.2