Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21170

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,575,551	+		DZA65_RS21165	0.56	-1.2
4,575,551	+		DZA65_RS21165	0.56	+0.5
4,575,551	+		DZA65_RS21165	0.56	-0.2
4,575,551	+		DZA65_RS21165	0.56	+1.3
4,575,552	-		DZA65_RS21165	0.56	-0.2
4,575,552	-		DZA65_RS21165	0.56	-0.6
4,575,552	-		DZA65_RS21165	0.56	+0.5
4,575,552	-		DZA65_RS21165	0.56	-1.4
4,575,552	-		DZA65_RS21165	0.56	-0.0
4,575,573	+		DZA65_RS21165	0.58	-0.5
4,575,573	+		DZA65_RS21165	0.58	-0.1
4,575,573	+		DZA65_RS21165	0.58	-1.0
4,575,573	+		DZA65_RS21165	0.58	-1.2
4,575,573	+		DZA65_RS21165	0.58	-0.1
4,575,574	-		DZA65_RS21165	0.58	-0.9
4,575,574	-		DZA65_RS21165	0.58	-1.7
4,575,694	-		DZA65_RS21165	0.67	+0.4
4,575,842	+		DZA65_RS21165	0.77	+1.2
4,575,851	+		DZA65_RS21165	0.78	-0.3
4,575,851	+		DZA65_RS21165	0.78	-0.4
4,575,851	+		DZA65_RS21165	0.78	-1.6
4,575,851	+		DZA65_RS21165	0.78	-0.0
4,575,852	-		DZA65_RS21165	0.78	-1.0
4,575,852	-		DZA65_RS21165	0.78	+1.5
4,575,852	-		DZA65_RS21165	0.78	-0.4
4,575,852	-		DZA65_RS21165	0.78	+0.9
4,575,934	+		DZA65_RS21165	0.84	-0.2
4,575,934	+		DZA65_RS21165	0.84	+0.6
4,575,934	+		DZA65_RS21165	0.84	+0.8
4,575,935	-		DZA65_RS21165	0.84	+1.0
4,575,945	+				+1.0
4,575,946	-		DZA65_RS21165	0.85	-1.0
4,575,981	+		DZA65_RS21165	0.88	+2.0
4,575,981	+		DZA65_RS21165	0.88	-1.5
4,575,981	+				-0.0
4,576,149	+				+1.2
4,576,149	+				+0.4
4,576,150	-				+0.1
4,576,169	+				-0.0
4,576,169	+				+3.3
4,576,169	+				-0.8
4,576,169	+				-0.6
4,576,169	+				-1.0
4,576,169	+				+0.8
4,576,169	+				-0.5
4,576,169	+				+0.4
4,576,169	+				+0.5
4,576,170	-				+1.5
4,576,170	-				-2.2
4,576,170	-				-1.8
4,576,170	-				+0.7
4,576,170	-				-0.4
4,576,170	-				-1.4
4,576,170	-				-0.5
4,576,223	+				-0.3
4,576,223	+				+0.3
4,576,224	-				+0.2
4,576,224	-				-0.5
4,576,224	-				-0.2
4,576,225	+				+1.5
4,576,225	+				-1.4
4,576,226	-				-1.8
4,576,226	-				-0.2
4,576,226	-				+1.1
4,576,247	+				-2.9
4,576,247	+				+1.4
4,576,247	+				+0.4
4,576,247	+				+0.0
4,576,247	+				+1.5
4,576,247	+				-0.6
4,576,247	+				-0.0
4,576,247	+				-0.6
4,576,247	+				+0.7
4,576,247	+				-0.5
4,576,247	+				-1.0
4,576,247	+				-0.3
4,576,247	+				+0.6
4,576,247	+				+0.1
4,576,247	+				-0.2
4,576,247	+				-0.3
4,576,248	-				+0.7
4,576,248	-				+0.2
4,576,248	-				+0.5
4,576,248	-				-1.2
4,576,248	-				-1.5
4,576,248	-				-1.6
4,576,248	-				+0.2
4,576,248	-				-0.6
4,576,248	-				-1.4
4,576,248	-				+0.0
4,576,248	-				+0.6
4,576,248	-				-0.8
4,576,248	-				-0.2
4,576,249	+				+0.4
4,576,249	+				-2.0
4,576,249	+				-0.8
4,576,250	-				+0.1
4,576,252	-				-0.3
4,576,252	-				-0.2
4,576,252	-				-0.7
4,576,264	+				+0.1
4,576,265	-				-0.3
4,576,269	+				+1.0
4,576,269	+				-0.4
4,576,269	+				+0.6
4,576,269	+				+0.2
4,576,269	+				+0.7
4,576,269	+				-2.6
4,576,269	+				-0.6
4,576,269	+				+0.8
4,576,269	+				-0.5
4,576,270	-				-0.4
4,576,270	-				-0.3
4,576,270	-				+0.2
4,576,270	-				-0.4
4,576,277	-				-1.4
4,576,320	-				-0.6
4,576,359	+				-0.0
4,576,359	+				-0.2
4,576,359	+				+1.0
4,576,359	+				+1.0
4,576,360	-				+0.3
4,576,367	+				-0.6
4,576,367	+				+1.8
4,576,367	+				+0.6
4,576,367	+				-1.3
4,576,367	+				-0.5
4,576,368	-				+0.3
4,576,368	-				+0.2
4,576,384	+				-0.5
4,576,385	-				-1.0
4,576,385	-				-2.5
4,576,392	+				+2.8
4,576,392	+				+0.6
4,576,392	+				-1.5
4,576,392	+				+2.0
4,576,393	-				-0.3
4,576,393	-				+0.7
4,576,393	-				-2.2
4,576,393	-				+1.5
4,576,425	+				-0.8
4,576,425	+				-0.0
4,576,425	+				+0.4
4,576,425	+				+0.3
4,576,425	+				+0.6
4,576,425	+				-0.5
4,576,425	+				+2.0
4,576,425	+				+0.9
4,576,425	+				+0.6
4,576,425	+				+3.0
4,576,426	-				-0.2
4,576,436	+				-1.2
4,576,436	+				+1.1
4,576,436	+				-2.8
4,576,436	+				+1.0
4,576,436	+				+0.0
4,576,437	-				+0.1
4,576,437	-				-1.7
4,576,437	-				+0.1
4,576,440	+				+0.5
4,576,475	-				+0.7
4,576,477	+				-1.4
4,576,478	-				+1.0
4,576,486	+				+0.5
4,576,486	+				+0.5
4,576,486	+				-0.9
4,576,487	-				+0.6
4,576,496	-				+0.3
4,576,504	+				-0.6
4,576,504	+				+0.4
4,576,505	-				+1.0
4,576,520	+				+2.1
4,576,553	+		DZA65_RS21170	0.18	-1.8
4,576,553	+		DZA65_RS21170	0.18	+0.0
4,576,553	+		DZA65_RS21170	0.18	-0.6
4,576,554	-		DZA65_RS21170	0.18	-0.4
4,576,554	-		DZA65_RS21170	0.18	-1.8
4,576,578	-		DZA65_RS21170	0.25	-0.2
4,576,582	+		DZA65_RS21170	0.26	-0.6
4,576,644	+		DZA65_RS21170	0.45	-1.8
4,576,645	-		DZA65_RS21170	0.45	-1.0
4,576,645	-		DZA65_RS21170	0.45	-2.5
4,576,656	-		DZA65_RS21170	0.48	+0.1
4,576,675	+		DZA65_RS21170	0.54	+0.4
4,576,676	-		DZA65_RS21170	0.54	-0.2
4,576,676	-		DZA65_RS21170	0.54	-1.8
4,576,789	+		DZA65_RS21170	0.88	-0.6
4,576,789	+		DZA65_RS21170	0.88	-1.1
4,576,843	+				+2.0
4,576,844	-				-0.0
4,576,844	-				+1.0
4,576,862	-				+0.1
4,576,870	-				-0.9
4,576,881	+				-0.9
4,576,881	+				+1.2
4,576,881	+				+0.4
4,576,881	+				+0.2
4,576,881	+				-2.0
4,576,881	+				-0.4
4,576,882	-				+0.1
4,576,882	-				+0.5
4,576,882	-				+0.8
4,576,882	-				-1.0
4,576,882	-				-0.4
4,576,882	-				-0.0
4,576,882	-				+0.2
4,576,882	-				+1.5
4,576,917	+				+1.2
4,576,917	+				+0.6
4,577,000	-				+1.8
4,577,055	-		DZA65_RS21175	0.14	-0.9
4,577,061	-		DZA65_RS21175	0.14	+1.0
4,577,081	+		DZA65_RS21175	0.16	-0.1
4,577,081	+		DZA65_RS21175	0.16	+0.2
4,577,081	+		DZA65_RS21175	0.16	+0.8
4,577,082	-		DZA65_RS21175	0.16	-1.5
4,577,082	-		DZA65_RS21175	0.16	+3.8
4,577,082	-		DZA65_RS21175	0.16	-0.6
4,577,082	-		DZA65_RS21175	0.16	-1.8
4,577,082	-		DZA65_RS21175	0.16	-1.0
4,577,082	-		DZA65_RS21175	0.16	-2.2
4,577,082	-		DZA65_RS21175	0.16	-1.6
4,577,093	+		DZA65_RS21175	0.17	+0.6
4,577,093	+		DZA65_RS21175	0.17	+1.3
4,577,144	+		DZA65_RS21175	0.22	+1.2
4,577,156	+		DZA65_RS21175	0.23	+1.8
4,577,156	+		DZA65_RS21175	0.23	+1.1
4,577,156	+		DZA65_RS21175	0.23	-1.6
4,577,156	+		DZA65_RS21175	0.23	-0.7
4,577,156	+		DZA65_RS21175	0.23	-0.5
4,577,157	-		DZA65_RS21175	0.23	+1.7
4,577,157	-		DZA65_RS21175	0.23	-1.8
4,577,172	-		DZA65_RS21175	0.25	+1.9
4,577,172	-		DZA65_RS21175	0.25	+0.2
4,577,196	+		DZA65_RS21175	0.27	+2.5
4,577,196	+		DZA65_RS21175	0.27	-0.3
4,577,196	+		DZA65_RS21175	0.27	-0.6
4,577,196	+		DZA65_RS21175	0.27	-1.8
4,577,196	+		DZA65_RS21175	0.27	-0.2
4,577,196	+		DZA65_RS21175	0.27	+0.5
4,577,196	+		DZA65_RS21175	0.27	+1.0
4,577,196	+		DZA65_RS21175	0.27	-0.0
4,577,196	+		DZA65_RS21175	0.27	-2.6
4,577,196	+		DZA65_RS21175	0.27	-2.0
4,577,196	+		DZA65_RS21175	0.27	+0.6
4,577,196	+		DZA65_RS21175	0.27	-0.0
4,577,196	+		DZA65_RS21175	0.27	-1.8
4,577,196	+		DZA65_RS21175	0.27	+1.6
4,577,196	+		DZA65_RS21175	0.27	+0.1
4,577,196	+		DZA65_RS21175	0.27	-0.3
4,577,196	+		DZA65_RS21175	0.27	-0.4
4,577,197	-		DZA65_RS21175	0.27	-0.5
4,577,197	-		DZA65_RS21175	0.27	-1.0
4,577,197	-		DZA65_RS21175	0.27	-0.2
4,577,197	-		DZA65_RS21175	0.27	+0.2
4,577,197	-		DZA65_RS21175	0.27	+1.4
4,577,197	-		DZA65_RS21175	0.27	+1.1
4,577,197	-		DZA65_RS21175	0.27	-0.2
4,577,197	-		DZA65_RS21175	0.27	-0.0
4,577,197	-		DZA65_RS21175	0.27	+0.4
4,577,197	-		DZA65_RS21175	0.27	+0.9
4,577,197	-		DZA65_RS21175	0.27	+0.2
4,577,197	-		DZA65_RS21175	0.27	-0.8
4,577,209	+		DZA65_RS21175	0.28	-0.5
4,577,209	+		DZA65_RS21175	0.28	+0.2
4,577,209	+		DZA65_RS21175	0.28	-0.5
4,577,209	+		DZA65_RS21175	0.28	+0.9
4,577,210	-		DZA65_RS21175	0.28	-0.0
4,577,210	-		DZA65_RS21175	0.28	-0.8
4,577,210	-		DZA65_RS21175	0.28	-2.0
4,577,210	-		DZA65_RS21175	0.28	+0.5
4,577,254	+		DZA65_RS21175	0.32	+1.0
4,577,254	+		DZA65_RS21175	0.32	+1.9
4,577,254	+		DZA65_RS21175	0.32	-0.7
4,577,254	+		DZA65_RS21175	0.32	-0.0
4,577,254	+		DZA65_RS21175	0.32	-1.5
4,577,254	+		DZA65_RS21175	0.32	-0.8
4,577,254	+		DZA65_RS21175	0.32	-1.8
4,577,255	-		DZA65_RS21175	0.32	+1.2
4,577,255	-		DZA65_RS21175	0.32	-0.3
4,577,255	-		DZA65_RS21175	0.32	-0.2
4,577,260	+		DZA65_RS21175	0.33	+0.6
4,577,260	+		DZA65_RS21175	0.33	+0.9
4,577,360	+		DZA65_RS21175	0.42	+0.4
4,577,361	-		DZA65_RS21175	0.42	+1.4
4,577,361	-		DZA65_RS21175	0.42	+0.2
4,577,361	-		DZA65_RS21175	0.42	+0.5
4,577,361	-		DZA65_RS21175	0.42	-0.9
4,577,361	-		DZA65_RS21175	0.42	-2.6
4,577,361	-		DZA65_RS21175	0.42	-1.4
4,577,361	-		DZA65_RS21175	0.42	-0.0
4,577,361	-		DZA65_RS21175	0.42	+0.2
4,577,361	-		DZA65_RS21175	0.42	-1.5
4,577,393	+		DZA65_RS21175	0.45	-1.4
4,577,393	+		DZA65_RS21175	0.45	-1.9
4,577,393	+		DZA65_RS21175	0.45	+0.7
4,577,393	+		DZA65_RS21175	0.45	-1.0
4,577,393	+		DZA65_RS21175	0.45	+1.5
4,577,393	+		DZA65_RS21175	0.45	+1.2
4,577,393	+		DZA65_RS21175	0.45	-0.1
4,577,393	+		DZA65_RS21175	0.45	-0.5
4,577,394	-		DZA65_RS21175	0.45	+1.0
4,577,394	-		DZA65_RS21175	0.45	-1.0
4,577,394	-		DZA65_RS21175	0.45	-0.2
4,577,394	-		DZA65_RS21175	0.45	+1.5
4,577,394	-		DZA65_RS21175	0.45	+0.3
4,577,394	-		DZA65_RS21175	0.45	-0.0
4,577,394	-		DZA65_RS21175	0.45	+1.9
4,577,416	+		DZA65_RS21175	0.47	+1.1
4,577,416	+		DZA65_RS21175	0.47	+1.7
4,577,436	+		DZA65_RS21175	0.49	-0.1
4,577,436	+		DZA65_RS21175	0.49	+0.1
4,577,436	+		DZA65_RS21175	0.49	+0.1
4,577,436	+		DZA65_RS21175	0.49	-0.0
4,577,436	+		DZA65_RS21175	0.49	-0.8
4,577,437	-		DZA65_RS21175	0.49	+0.5
4,577,437	-		DZA65_RS21175	0.49	+1.2
4,577,451	+		DZA65_RS21175	0.51	-0.6
4,577,451	+		DZA65_RS21175	0.51	-1.1
4,577,452	-		DZA65_RS21175	0.51	-1.6
4,577,490	+		DZA65_RS21175	0.54	+0.3
4,577,490	+		DZA65_RS21175	0.54	-0.8
4,577,491	-		DZA65_RS21175	0.54	-0.0
4,577,504	-		DZA65_RS21175	0.56	-1.3
4,577,553	-		DZA65_RS21175	0.60	-1.0
4,577,553	-		DZA65_RS21175	0.60	-0.6
4,577,553	-		DZA65_RS21175	0.60	-1.6
4,577,555	+		DZA65_RS21175	0.60	+0.9
4,577,555	+		DZA65_RS21175	0.60	+0.6
4,577,556	-		DZA65_RS21175	0.60	+2.0
4,577,556	-		DZA65_RS21175	0.60	-2.0
4,577,556	-		DZA65_RS21175	0.60	+1.0
4,577,556	-		DZA65_RS21175	0.60	+0.4
4,577,587	+		DZA65_RS21175	0.63	-0.6
4,577,588	-		DZA65_RS21175	0.63	+0.4
4,577,589	+		DZA65_RS21175	0.64	-1.4
4,577,589	+		DZA65_RS21175	0.64	-1.8
4,577,589	+		DZA65_RS21175	0.64	-1.4
4,577,589	+		DZA65_RS21175	0.64	+0.3
4,577,589	+		DZA65_RS21175	0.64	+1.0
4,577,590	-		DZA65_RS21175	0.64	-1.0
4,577,590	-		DZA65_RS21175	0.64	-1.0
4,577,590	-		DZA65_RS21175	0.64	+0.2
4,577,590	-		DZA65_RS21175	0.64	-2.5
4,577,590	-		DZA65_RS21175	0.64	-0.5
4,577,590	-		DZA65_RS21175	0.64	-0.2
4,577,760	+		DZA65_RS21175	0.79	+0.5
4,577,761	-		DZA65_RS21175	0.80	-0.9
4,577,761	-		DZA65_RS21175	0.80	+1.2
4,577,761	-		DZA65_RS21175	0.80	-0.6
4,577,813	+		DZA65_RS21175	0.84	-0.5
4,577,814	-		DZA65_RS21175	0.84	+0.3
4,577,814	-		DZA65_RS21175	0.84	-1.5
4,577,814	-		DZA65_RS21175	0.84	-0.3
4,577,814	-		DZA65_RS21175	0.84	+3.3
4,577,814	-		DZA65_RS21175	0.84	-1.2
4,577,814	-		DZA65_RS21175	0.84	+0.5