Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20860

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,501,626	-		DZA65_RS20855	0.53	+1.5
4,501,631	+		DZA65_RS20855	0.53	-1.1
4,501,632	-		DZA65_RS20855	0.53	-0.6
4,501,652	+		DZA65_RS20855	0.55	-1.7
4,501,652	+		DZA65_RS20855	0.55	+1.1
4,501,652	+		DZA65_RS20855	0.55	-0.7
4,501,652	+		DZA65_RS20855	0.55	+0.0
4,501,652	+		DZA65_RS20855	0.55	-0.5
4,501,652	+		DZA65_RS20855	0.55	+0.9
4,501,652	+		DZA65_RS20855	0.55	-0.1
4,501,652	+		DZA65_RS20855	0.55	-0.3
4,501,652	+		DZA65_RS20855	0.55	+0.3
4,501,653	-		DZA65_RS20855	0.55	+0.1
4,501,653	-		DZA65_RS20855	0.55	-1.2
4,501,653	-		DZA65_RS20855	0.55	-0.1
4,501,653	-		DZA65_RS20855	0.55	-0.7
4,501,653	-		DZA65_RS20855	0.55	+0.3
4,501,653	-		DZA65_RS20855	0.55	-0.1
4,501,653	-		DZA65_RS20855	0.55	-0.2
4,501,653	-		DZA65_RS20855	0.55	-1.3
4,501,653	-		DZA65_RS20855	0.55	+0.0
4,501,653	-		DZA65_RS20855	0.55	-0.7
4,501,660	+		DZA65_RS20855	0.55	+0.1
4,501,660	+		DZA65_RS20855	0.55	-1.1
4,501,661	-		DZA65_RS20855	0.55	-0.1
4,501,661	-		DZA65_RS20855	0.55	-0.1
4,501,758	-		DZA65_RS20855	0.61	-1.4
4,501,758	-		DZA65_RS20855	0.61	-1.4
4,501,855	+		DZA65_RS20855	0.66	+0.2
4,501,862	+		DZA65_RS20855	0.67	-1.0
4,501,863	-		DZA65_RS20855	0.67	+0.3
4,501,863	-		DZA65_RS20855	0.67	+0.1
4,501,863	-		DZA65_RS20855	0.67	+0.1
4,501,870	+		DZA65_RS20855	0.67	-0.2
4,501,870	+		DZA65_RS20855	0.67	-0.8
4,501,871	-		DZA65_RS20855	0.67	-2.4
4,501,871	-		DZA65_RS20855	0.67	+1.5
4,501,871	-		DZA65_RS20855	0.67	-0.2
4,501,871	-		DZA65_RS20855	0.67	-1.7
4,501,939	+		DZA65_RS20855	0.71	-1.8
4,501,940	-		DZA65_RS20855	0.71	-1.0
4,501,940	-		DZA65_RS20855	0.71	-0.1
4,501,952	+		DZA65_RS20855	0.72	+0.2
4,501,952	+		DZA65_RS20855	0.72	+0.8
4,501,953	-		DZA65_RS20855	0.72	-0.9
4,501,953	-		DZA65_RS20855	0.72	+1.3
4,501,976	+		DZA65_RS20855	0.74	-1.4
4,501,977	-		DZA65_RS20855	0.74	-1.3
4,501,977	-		DZA65_RS20855	0.74	-0.3
4,501,977	-		DZA65_RS20855	0.74	-0.1
4,501,977	-		DZA65_RS20855	0.74	-0.5
4,502,001	-		DZA65_RS20855	0.75	-2.7
4,502,027	+		DZA65_RS20855	0.76	-0.8
4,502,027	+		DZA65_RS20855	0.76	+0.6
4,502,028	-		DZA65_RS20855	0.77	+0.8
4,502,096	+		DZA65_RS20855	0.81	-0.2
4,502,097	-		DZA65_RS20855	0.81	-0.2
4,502,195	+		DZA65_RS20855	0.86	-0.9
4,502,196	-		DZA65_RS20855	0.86	-1.7
4,502,196	-		DZA65_RS20855	0.86	-0.8
4,502,196	-		DZA65_RS20855	0.86	-0.2
4,502,237	-		DZA65_RS20855	0.89	+0.2
4,502,237	-		DZA65_RS20855	0.89	+0.9
4,502,254	+		DZA65_RS20855	0.90	-0.1
4,502,254	+		DZA65_RS20855	0.90	-1.7
4,502,254	+		DZA65_RS20855	0.90	-1.1
4,502,255	-		DZA65_RS20855	0.90	+0.1
4,502,261	+				+0.6
4,502,261	+				-1.8
4,502,261	+				-0.8
4,502,261	+				+2.1
4,502,261	+				-0.8
4,502,261	+				+0.3
4,502,262	-				+0.1
4,502,262	-				-0.2
4,502,262	-				+0.0
4,502,270	+				-0.9
4,502,270	+				-0.2
4,502,299	-				+0.9
4,502,367	+				+0.2
4,502,367	+				+1.7
4,502,367	+				+0.6
4,502,368	-				-0.6
4,502,368	-				+0.8
4,502,390	+				+0.6
4,502,399	+				+0.9
4,502,399	+				-1.3
4,502,399	+				+1.1
4,502,399	+				+0.7
4,502,399	+				-0.9
4,502,399	+				-1.1
4,502,400	-				+0.0
4,502,400	-				+0.2
4,502,400	-				-0.7
4,502,400	-				+0.1
4,502,400	-				+0.5
4,502,402	-				+1.6
4,502,492	-				-3.1
4,502,507	-				-0.3
4,502,508	+				-0.8
4,502,508	+				+0.1
4,502,508	+				-1.5
4,502,508	+				+0.4
4,502,508	+				-0.7
4,502,509	-				+0.2
4,502,509	-				-2.0
4,502,509	-				-0.3
4,502,509	-				-2.1
4,502,509	-				-1.2
4,502,509	-				+0.0
4,502,509	-				-0.4
4,502,509	-				-0.4
4,502,527	+				+0.7
4,502,527	+				-0.8
4,502,545	+				-0.3
4,502,545	+				+0.2
4,502,553	+				-1.2
4,502,556	+				-1.7
4,502,556	+				-0.0
4,502,556	+				-0.7
4,502,556	+				+0.2
4,502,556	+				+0.6
4,502,557	-				-2.5
4,502,562	+				+0.2
4,502,562	+				-0.8
4,502,563	-				+0.1
4,502,563	-				-0.7
4,502,573	+				-0.6
4,502,574	-				+0.7
4,502,579	+				+1.7
4,502,579	+				+0.1
4,502,580	-				-0.1
4,502,594	-				+0.4
4,502,594	-				-0.1
4,502,700	-				-1.7
4,502,735	-				+2.7
4,502,735	-				-0.9
4,502,735	-				-3.5
4,502,735	-				-1.5
4,502,761	-				-0.5
4,502,887	-		DZA65_RS20860	0.13	-0.7
4,502,887	-		DZA65_RS20860	0.13	-1.1
4,502,895	+		DZA65_RS20860	0.13	-0.7
4,502,896	-		DZA65_RS20860	0.14	-2.5
4,502,896	-		DZA65_RS20860	0.14	-0.7
4,502,896	-		DZA65_RS20860	0.14	-1.7
4,503,068	+		DZA65_RS20860	0.21	+0.8
4,503,068	+		DZA65_RS20860	0.21	+0.5
4,503,123	+		DZA65_RS20860	0.23	-1.2
4,503,123	+		DZA65_RS20860	0.23	-0.1
4,503,123	+		DZA65_RS20860	0.23	+0.5
4,503,124	-		DZA65_RS20860	0.23	-1.5
4,503,644	+		DZA65_RS20860	0.46	+0.3
4,503,644	+		DZA65_RS20860	0.46	-2.5
4,503,644	+		DZA65_RS20860	0.46	+0.1
4,503,644	+		DZA65_RS20860	0.46	-1.5
4,503,644	+		DZA65_RS20860	0.46	-1.3
4,503,645	-		DZA65_RS20860	0.46	-1.5
4,503,645	-		DZA65_RS20860	0.46	-0.9
4,503,645	-		DZA65_RS20860	0.46	-0.2
4,503,645	-		DZA65_RS20860	0.46	+0.6
4,503,648	+		DZA65_RS20860	0.46	-0.1
4,503,649	-				+0.5
4,503,890	-		DZA65_RS20860	0.56	-0.3
4,504,592	-		DZA65_RS20860	0.86	-1.4
4,504,613	+		DZA65_RS20860	0.87	+0.2
4,504,613	+				-1.7
4,504,613	+		DZA65_RS20860	0.87	-1.4
4,504,613	+		DZA65_RS20860	0.87	+0.3
4,504,614	-		DZA65_RS20860	0.87	+0.1
4,504,802	+				+0.3
4,504,877	+				-0.5
4,504,877	+				+0.5
4,504,963	+				+0.8
4,504,963	+				-1.0
4,504,963	+				+1.8
4,504,963	+				-0.2
4,504,964	-				-1.2
4,504,964	-				-0.1
4,504,981	+				-1.7
4,504,981	+				+0.3
4,504,982	-				+0.1
4,504,982	-				-1.7
4,504,982	-				+1.9
4,504,998	+				-1.6
4,504,999	-				+0.9
4,505,007	+				-0.5
4,505,008	-				+1.1
4,505,008	-				+0.2
4,505,008	-				-2.7
4,505,008	-				+0.7
4,505,008	-				+0.9
4,505,008	-				-0.9
4,505,021	-				-1.2
4,505,072	+				-1.1
4,505,072	+				+0.6
4,505,073	-				-1.5
4,505,073	-				-1.0
4,505,073	-				-0.7
4,505,477	+		DZA65_RS20865	0.60	+0.1
4,505,478	-		DZA65_RS20865	0.60	-0.1
4,505,746	+				+0.7
4,505,746	+				-0.4
4,505,746	+				+1.8
4,505,746	+				-0.7
4,505,746	+				-0.2
4,505,746	+				+1.7
4,505,746	+				+0.1
4,505,746	+				+0.6
4,505,746	+				+0.2
4,505,746	+				-0.1
4,505,747	-				-0.4
4,505,747	-				-0.7
4,505,747	-				+0.5
4,505,778	+				-0.6
4,505,779	-				+0.6
4,505,779	-				-1.1
4,505,779	-				+0.3
4,505,779	-				-0.1
4,505,791	+				+0.9
4,505,791	+				+0.3
4,505,791	+				-1.9
4,505,791	+				+2.0
4,505,791	+				+1.5
4,505,791	+				-0.4
4,505,791	+				-1.7
4,505,791	+				+0.6
4,505,791	+				+0.9
4,505,791	+				+0.6
4,505,791	+				+0.7
4,505,791	+				+0.7
4,505,791	+				-0.5
4,505,792	-				-1.8
4,505,792	-				-0.4
4,505,792	-				-1.4
4,505,792	-				-1.7
4,505,792	-				-1.3
4,505,792	-				+0.5
4,505,792	-				+0.4
4,505,792	-				-0.2
4,505,792	-				-0.5
4,505,792	-				-0.7
4,505,792	-				-0.9
4,505,792	-				+3.2
4,505,792	-				+1.9
4,505,793	+				+0.7
4,505,793	+				-0.3
4,505,793	+				+0.3
4,505,793	+				+2.1
4,505,793	+				+1.3
4,505,793	+				-2.2
4,505,794	-				+0.1
4,505,794	-				+0.9
4,505,794	-				+0.6
4,505,794	-				-0.4
4,505,794	-				-0.1
4,505,911	+				-1.3
4,505,911	+				-0.1
4,505,912	-				+0.0
4,505,916	+				-0.1
4,505,916	+				+0.1
4,505,916	+				+0.9