Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20640 and DZA65_RS20645 are separated by 17 nucleotides DZA65_RS20645 and DZA65_RS20650 are separated by 326 nucleotides
DZA65_RS20640: DZA65_RS20640 - phosphoribulokinase, at 4,452,240 to 4,453,109
_RS20640
DZA65_RS20645: DZA65_RS20645 - OsmC family protein, at 4,453,127 to 4,453,534
_RS20645
DZA65_RS20650: DZA65_RS20650 - cAMP-activated global transcriptional regulator CRP, at 4,453,861 to 4,454,493
_RS20650
Position (kb) 4453
4454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4452.131 kb on + strand at 4452.132 kb on - strand at 4452.154 kb on + strand at 4452.155 kb on - strand at 4452.155 kb on - strand at 4452.155 kb on - strand at 4452.155 kb on - strand at 4452.155 kb on - strand at 4452.155 kb on - strand at 4452.163 kb on + strand at 4452.196 kb on + strand at 4452.212 kb on + strand at 4452.212 kb on + strand at 4452.213 kb on - strand at 4452.369 kb on + strand, within DZA65_RS20640 at 4452.369 kb on + strand, within DZA65_RS20640 at 4452.369 kb on + strand, within DZA65_RS20640 at 4452.369 kb on + strand, within DZA65_RS20640 at 4452.369 kb on + strand, within DZA65_RS20640 at 4452.370 kb on - strand, within DZA65_RS20640 at 4452.370 kb on - strand, within DZA65_RS20640 at 4452.370 kb on - strand, within DZA65_RS20640 at 4452.370 kb on - strand, within DZA65_RS20640 at 4452.370 kb on - strand, within DZA65_RS20640 at 4452.378 kb on + strand, within DZA65_RS20640 at 4452.378 kb on + strand, within DZA65_RS20640 at 4452.378 kb on + strand at 4452.378 kb on + strand, within DZA65_RS20640 at 4452.378 kb on + strand, within DZA65_RS20640 at 4452.379 kb on - strand, within DZA65_RS20640 at 4452.380 kb on + strand at 4452.441 kb on + strand, within DZA65_RS20640 at 4452.442 kb on - strand, within DZA65_RS20640 at 4452.528 kb on + strand, within DZA65_RS20640 at 4452.528 kb on + strand, within DZA65_RS20640 at 4452.529 kb on - strand, within DZA65_RS20640 at 4452.541 kb on - strand, within DZA65_RS20640 at 4452.541 kb on - strand, within DZA65_RS20640 at 4452.558 kb on + strand, within DZA65_RS20640 at 4452.558 kb on + strand, within DZA65_RS20640 at 4452.559 kb on - strand, within DZA65_RS20640 at 4452.559 kb on - strand, within DZA65_RS20640 at 4452.559 kb on - strand, within DZA65_RS20640 at 4452.559 kb on - strand, within DZA65_RS20640 at 4452.624 kb on + strand, within DZA65_RS20640 at 4452.624 kb on + strand, within DZA65_RS20640 at 4452.624 kb on + strand, within DZA65_RS20640 at 4452.624 kb on + strand, within DZA65_RS20640 at 4452.625 kb on - strand, within DZA65_RS20640 at 4452.653 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.807 kb on + strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.808 kb on - strand, within DZA65_RS20640 at 4452.845 kb on + strand, within DZA65_RS20640 at 4452.871 kb on + strand, within DZA65_RS20640 at 4452.871 kb on + strand, within DZA65_RS20640 at 4452.871 kb on + strand, within DZA65_RS20640 at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.087 kb on + strand at 4453.088 kb on - strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.100 kb on + strand at 4453.101 kb on - strand at 4453.101 kb on - strand at 4453.101 kb on - strand at 4453.107 kb on + strand at 4453.160 kb on - strand at 4453.200 kb on + strand, within DZA65_RS20645 at 4453.201 kb on - strand, within DZA65_RS20645 at 4453.267 kb on + strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.268 kb on - strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.372 kb on + strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.373 kb on - strand, within DZA65_RS20645 at 4453.534 kb on + strand at 4453.577 kb on + strand at 4453.577 kb on + strand at 4453.577 kb on + strand at 4453.577 kb on + strand at 4453.578 kb on - strand at 4453.578 kb on - strand at 4453.578 kb on - strand at 4453.581 kb on + strand at 4453.582 kb on - strand at 4453.582 kb on - strand at 4453.582 kb on - strand at 4453.584 kb on - strand at 4453.584 kb on - strand at 4453.607 kb on + strand at 4453.607 kb on + strand at 4453.607 kb on + strand at 4453.607 kb on + strand at 4453.608 kb on - strand at 4453.608 kb on - strand at 4453.608 kb on - strand at 4453.608 kb on - strand at 4453.639 kb on + strand at 4453.639 kb on + strand at 4453.640 kb on - strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.681 kb on + strand at 4453.741 kb on + strand at 4453.743 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.786 kb on + strand at 4453.791 kb on + strand at 4453.791 kb on + strand at 4453.801 kb on + strand at 4453.801 kb on + strand at 4453.839 kb on + strand at 4454.495 kb on + strand at 4454.495 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,452,131 + -0.5 4,452,132 - +0.3 4,452,154 + -0.4 4,452,155 - -0.1 4,452,155 - +1.5 4,452,155 - +1.3 4,452,155 - +0.3 4,452,155 - -0.5 4,452,155 - -0.1 4,452,163 + -0.9 4,452,196 + +0.6 4,452,212 + +0.9 4,452,212 + +0.3 4,452,213 - +0.1 4,452,369 + DZA65_RS20640 0.15 +0.5 4,452,369 + DZA65_RS20640 0.15 -0.9 4,452,369 + DZA65_RS20640 0.15 -0.1 4,452,369 + DZA65_RS20640 0.15 -0.1 4,452,369 + DZA65_RS20640 0.15 -0.8 4,452,370 - DZA65_RS20640 0.15 +1.2 4,452,370 - DZA65_RS20640 0.15 -0.0 4,452,370 - DZA65_RS20640 0.15 -1.1 4,452,370 - DZA65_RS20640 0.15 -0.5 4,452,370 - DZA65_RS20640 0.15 +0.9 4,452,378 + DZA65_RS20640 0.16 +0.2 4,452,378 + DZA65_RS20640 0.16 -0.6 4,452,378 + +0.9 4,452,378 + DZA65_RS20640 0.16 -1.7 4,452,378 + DZA65_RS20640 0.16 -1.6 4,452,379 - DZA65_RS20640 0.16 +0.1 4,452,380 + -1.7 4,452,441 + DZA65_RS20640 0.23 +0.3 4,452,442 - DZA65_RS20640 0.23 -2.1 4,452,528 + DZA65_RS20640 0.33 -1.8 4,452,528 + DZA65_RS20640 0.33 -0.1 4,452,529 - DZA65_RS20640 0.33 -0.6 4,452,541 - DZA65_RS20640 0.35 -1.1 4,452,541 - DZA65_RS20640 0.35 +0.5 4,452,558 + DZA65_RS20640 0.37 -2.4 4,452,558 + DZA65_RS20640 0.37 -1.3 4,452,559 - DZA65_RS20640 0.37 -2.1 4,452,559 - DZA65_RS20640 0.37 +0.9 4,452,559 - DZA65_RS20640 0.37 -1.3 4,452,559 - DZA65_RS20640 0.37 +0.3 4,452,624 + DZA65_RS20640 0.44 +0.3 4,452,624 + DZA65_RS20640 0.44 -0.1 4,452,624 + DZA65_RS20640 0.44 +0.3 4,452,624 + DZA65_RS20640 0.44 -0.2 4,452,625 - DZA65_RS20640 0.44 -1.7 4,452,653 + DZA65_RS20640 0.47 +0.4 4,452,807 + DZA65_RS20640 0.65 -1.6 4,452,807 + DZA65_RS20640 0.65 -0.2 4,452,807 + DZA65_RS20640 0.65 -0.7 4,452,807 + DZA65_RS20640 0.65 +1.1 4,452,807 + DZA65_RS20640 0.65 -0.1 4,452,807 + DZA65_RS20640 0.65 -0.1 4,452,807 + DZA65_RS20640 0.65 -0.3 4,452,807 + DZA65_RS20640 0.65 +1.1 4,452,807 + DZA65_RS20640 0.65 +0.5 4,452,808 - DZA65_RS20640 0.65 -0.4 4,452,808 - DZA65_RS20640 0.65 -1.0 4,452,808 - DZA65_RS20640 0.65 -0.7 4,452,808 - DZA65_RS20640 0.65 +1.9 4,452,808 - DZA65_RS20640 0.65 -2.3 4,452,808 - DZA65_RS20640 0.65 -1.9 4,452,808 - DZA65_RS20640 0.65 -1.6 4,452,808 - DZA65_RS20640 0.65 +0.5 4,452,808 - DZA65_RS20640 0.65 +0.2 4,452,808 - DZA65_RS20640 0.65 +0.5 4,452,808 - DZA65_RS20640 0.65 -1.1 4,452,808 - DZA65_RS20640 0.65 -0.1 4,452,808 - DZA65_RS20640 0.65 +0.2 4,452,845 + DZA65_RS20640 0.70 -1.1 4,452,871 + DZA65_RS20640 0.73 -0.2 4,452,871 + DZA65_RS20640 0.73 +0.6 4,452,871 + DZA65_RS20640 0.73 -1.0 4,453,087 + +1.6 4,453,087 + -0.7 4,453,087 + -1.7 4,453,087 + +1.5 4,453,087 + -0.5 4,453,087 + +0.9 4,453,088 - +0.0 4,453,100 + -0.1 4,453,100 + -0.9 4,453,100 + -0.1 4,453,100 + -0.1 4,453,100 + +0.9 4,453,100 + +0.1 4,453,101 - -0.1 4,453,101 - +1.1 4,453,101 - -0.3 4,453,107 + +0.9 4,453,160 - -1.4 4,453,200 + DZA65_RS20645 0.18 -0.1 4,453,201 - DZA65_RS20645 0.18 -1.9 4,453,267 + DZA65_RS20645 0.34 -1.1 4,453,268 - DZA65_RS20645 0.35 -0.5 4,453,268 - DZA65_RS20645 0.35 +0.7 4,453,268 - DZA65_RS20645 0.35 +0.9 4,453,268 - DZA65_RS20645 0.35 -0.7 4,453,372 + DZA65_RS20645 0.60 -0.8 4,453,372 + DZA65_RS20645 0.60 -0.1 4,453,372 + DZA65_RS20645 0.60 -1.5 4,453,372 + DZA65_RS20645 0.60 -1.0 4,453,372 + DZA65_RS20645 0.60 -0.7 4,453,372 + DZA65_RS20645 0.60 +2.7 4,453,373 - DZA65_RS20645 0.60 +0.2 4,453,373 - DZA65_RS20645 0.60 -0.5 4,453,373 - DZA65_RS20645 0.60 -0.2 4,453,373 - DZA65_RS20645 0.60 +0.5 4,453,534 + +0.5 4,453,577 + -1.9 4,453,577 + -0.0 4,453,577 + -0.9 4,453,577 + -0.3 4,453,578 - -0.1 4,453,578 - +0.3 4,453,578 - +0.5 4,453,581 + -0.1 4,453,582 - +0.3 4,453,582 - -0.7 4,453,582 - -0.3 4,453,584 - -0.2 4,453,584 - +0.5 4,453,607 + -0.1 4,453,607 + +1.1 4,453,607 + -0.9 4,453,607 + +0.0 4,453,608 - -0.5 4,453,608 - -0.3 4,453,608 - -0.5 4,453,608 - -0.6 4,453,639 + -0.1 4,453,639 + +0.9 4,453,640 - -2.9 4,453,681 + -1.1 4,453,681 + -0.6 4,453,681 + -0.0 4,453,681 + +1.5 4,453,681 + +0.9 4,453,741 + -1.1 4,453,743 + -1.7 4,453,786 + -0.4 4,453,786 + -0.1 4,453,786 + -1.1 4,453,786 + -1.0 4,453,786 + -0.4 4,453,791 + +2.5 4,453,791 + -1.9 4,453,801 + +0.3 4,453,801 + -0.7 4,453,839 + -0.7 4,454,495 + -0.1 4,454,495 + -0.1
Or see this region's nucleotide sequence