Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20575

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,437,736	+		DZA65_RS20565	0.81	+0.3
4,437,743	-		DZA65_RS20565	0.82	+0.1
4,437,758	+		DZA65_RS20565	0.82	-0.2
4,437,758	+		DZA65_RS20565	0.82	-1.0
4,437,759	-		DZA65_RS20565	0.83	+1.1
4,437,800	+		DZA65_RS20565	0.85	-0.7
4,437,800	+		DZA65_RS20565	0.85	-0.9
4,437,800	+		DZA65_RS20565	0.85	+1.2
4,437,800	+		DZA65_RS20565	0.85	+1.6
4,437,800	+		DZA65_RS20565	0.85	+1.5
4,437,800	+		DZA65_RS20565	0.85	-0.6
4,437,801	-		DZA65_RS20565	0.85	-0.1
4,437,801	-		DZA65_RS20565	0.85	-0.1
4,437,801	-		DZA65_RS20565	0.85	-0.7
4,437,801	-				-1.4
4,437,962	-				-0.3
4,437,979	+				+0.2
4,437,979	+				-1.9
4,437,979	+				+0.6
4,437,998	+				-1.1
4,437,999	-				+0.7
4,437,999	-				+1.9
4,437,999	-				-1.7
4,438,016	-				+0.6
4,438,016	-				+0.2
4,438,016	-				+0.4
4,438,068	+				+0.9
4,438,068	+				+0.1
4,438,068	+				-0.3
4,438,068	+				-2.6
4,438,068	+				-1.1
4,438,068	+				-0.5
4,438,069	-				-0.4
4,438,069	-				+0.1
4,438,069	-				-0.7
4,438,069	-				+0.2
4,438,069	-				-0.5
4,438,069	-				+1.5
4,438,069	-				+2.7
4,438,076	+				-1.1
4,438,076	+				+1.8
4,438,077	-				+1.5
4,438,088	+				-0.5
4,438,114	+		DZA65_RS20570	0.11	-0.3
4,438,114	+		DZA65_RS20570	0.11	-0.9
4,438,114	+		DZA65_RS20570	0.11	+0.0
4,438,114	+		DZA65_RS20570	0.11	+0.9
4,438,115	-		DZA65_RS20570	0.11	-0.1
4,438,115	-		DZA65_RS20570	0.11	-1.1
4,438,115	-		DZA65_RS20570	0.11	-0.8
4,438,115	-		DZA65_RS20570	0.11	+0.9
4,438,115	-		DZA65_RS20570	0.11	+0.0
4,438,175	-		DZA65_RS20570	0.20	+1.2
4,438,175	-		DZA65_RS20570	0.20	+2.5
4,438,252	+		DZA65_RS20570	0.31	+0.3
4,438,268	+		DZA65_RS20570	0.34	+0.2
4,438,268	+		DZA65_RS20570	0.34	-1.4
4,438,269	-		DZA65_RS20570	0.34	-1.3
4,438,333	+		DZA65_RS20570	0.43	+0.6
4,438,333	+		DZA65_RS20570	0.43	+0.3
4,438,333	+		DZA65_RS20570	0.43	+0.5
4,438,333	+		DZA65_RS20570	0.43	-0.1
4,438,333	+		DZA65_RS20570	0.43	+0.2
4,438,333	+		DZA65_RS20570	0.43	+2.1
4,438,333	+		DZA65_RS20570	0.43	+0.6
4,438,333	+		DZA65_RS20570	0.43	-1.1
4,438,333	+		DZA65_RS20570	0.43	+0.2
4,438,333	+		DZA65_RS20570	0.43	+1.3
4,438,333	+		DZA65_RS20570	0.43	-0.4
4,438,334	-		DZA65_RS20570	0.44	+0.4
4,438,334	-		DZA65_RS20570	0.44	-0.1
4,438,334	-		DZA65_RS20570	0.44	-0.4
4,438,334	-		DZA65_RS20570	0.44	+0.3
4,438,334	-		DZA65_RS20570	0.44	-0.2
4,438,334	-		DZA65_RS20570	0.44	+0.5
4,438,334	-		DZA65_RS20570	0.44	+0.1
4,438,334	-		DZA65_RS20570	0.44	+0.3
4,438,334	-		DZA65_RS20570	0.44	+0.4
4,438,340	+		DZA65_RS20570	0.45	+0.1
4,438,340	+		DZA65_RS20570	0.45	+0.5
4,438,340	+		DZA65_RS20570	0.45	+0.3
4,438,340	+				+0.2
4,438,341	-		DZA65_RS20570	0.45	+0.5
4,438,341	-		DZA65_RS20570	0.45	-0.5
4,438,341	-		DZA65_RS20570	0.45	+0.3
4,438,427	+		DZA65_RS20570	0.58	-1.1
4,438,476	+		DZA65_RS20570	0.65	-0.8
4,438,547	+		DZA65_RS20570	0.75	+2.3
4,438,547	+		DZA65_RS20570	0.75	-0.8
4,438,547	+		DZA65_RS20570	0.75	-0.8
4,438,548	-		DZA65_RS20570	0.76	-0.5
4,438,548	-		DZA65_RS20570	0.76	+0.4
4,438,576	+		DZA65_RS20570	0.80	+0.7
4,438,576	+		DZA65_RS20570	0.80	-1.9
4,438,577	-		DZA65_RS20570	0.80	-0.4
4,438,577	-		DZA65_RS20570	0.80	-1.3
4,438,577	-		DZA65_RS20570	0.80	+1.0
4,438,577	-		DZA65_RS20570	0.80	+1.3
4,438,577	-		DZA65_RS20570	0.80	-1.4
4,438,577	-		DZA65_RS20570	0.80	+0.2
4,438,577	-		DZA65_RS20570	0.80	+0.9
4,438,620	+		DZA65_RS20570	0.86	+0.1
4,438,620	+		DZA65_RS20570	0.86	-1.5
4,438,620	+		DZA65_RS20570	0.86	+0.9
4,438,659	+				+0.9
4,438,659	+				+1.9
4,438,660	-				+2.1
4,438,660	-				-0.5
4,438,681	+				-1.4
4,438,681	+				-0.8
4,438,682	-				+0.0
4,438,682	-				-0.5
4,438,814	+				-0.1
4,438,814	+				-0.1
4,438,814	+				-1.4
4,438,814	+				-1.3
4,438,814	+				+0.6
4,438,815	-				+0.2
4,438,815	-				+0.1
4,438,815	-				-0.5
4,438,815	-				+0.3
4,438,957	+		DZA65_RS20575	0.22	-1.4
4,438,957	+		DZA65_RS20575	0.22	+0.3
4,438,988	-		DZA65_RS20575	0.25	-0.7
4,439,014	+		DZA65_RS20575	0.27	-0.0
4,439,014	+		DZA65_RS20575	0.27	+0.6
4,439,014	+		DZA65_RS20575	0.27	-1.4
4,439,015	-		DZA65_RS20575	0.27	-0.3
4,439,015	-		DZA65_RS20575	0.27	-1.2
4,439,015	-		DZA65_RS20575	0.27	-1.3
4,439,123	+		DZA65_RS20575	0.37	+1.4
4,439,224	+		DZA65_RS20575	0.46	+0.5
4,439,224	+		DZA65_RS20575	0.46	-2.1
4,439,224	+		DZA65_RS20575	0.46	+0.2
4,439,224	+		DZA65_RS20575	0.46	-0.4
4,439,225	-		DZA65_RS20575	0.46	+0.4
4,439,225	-		DZA65_RS20575	0.46	-0.7
4,439,225	-		DZA65_RS20575	0.46	-0.8
4,439,225	-		DZA65_RS20575	0.46	-0.1
4,439,225	-		DZA65_RS20575	0.46	+0.5
4,439,236	+		DZA65_RS20575	0.47	-0.7
4,439,236	+		DZA65_RS20575	0.47	-0.7
4,439,236	+		DZA65_RS20575	0.47	+1.5
4,439,236	+		DZA65_RS20575	0.47	+0.1
4,439,236	+		DZA65_RS20575	0.47	-1.9
4,439,237	-		DZA65_RS20575	0.47	+0.4
4,439,237	-		DZA65_RS20575	0.47	+0.5
4,439,237	-		DZA65_RS20575	0.47	-0.4
4,439,237	-		DZA65_RS20575	0.47	-1.1
4,439,237	-		DZA65_RS20575	0.47	-0.2
4,439,237	-		DZA65_RS20575	0.47	-1.1
4,439,237	-		DZA65_RS20575	0.47	-1.1
4,439,237	-		DZA65_RS20575	0.47	+0.6
4,439,237	-		DZA65_RS20575	0.47	+1.1
4,439,243	+		DZA65_RS20575	0.47	-1.7
4,439,305	+		DZA65_RS20575	0.53	-1.9
4,439,305	+		DZA65_RS20575	0.53	-0.6
4,439,305	+		DZA65_RS20575	0.53	-1.7
4,439,305	+		DZA65_RS20575	0.53	-0.5
4,439,306	-		DZA65_RS20575	0.53	-0.9
4,439,306	-		DZA65_RS20575	0.53	-0.2
4,439,346	+		DZA65_RS20575	0.56	+0.0
4,439,379	-		DZA65_RS20575	0.59	-1.0
4,439,464	+		DZA65_RS20575	0.67	-0.4
4,439,465	-		DZA65_RS20575	0.67	+0.2
4,439,494	+		DZA65_RS20575	0.70	-0.2
4,439,494	+		DZA65_RS20575	0.70	+0.9
4,439,494	+		DZA65_RS20575	0.70	-1.1
4,439,495	-		DZA65_RS20575	0.70	-0.8
4,439,495	-		DZA65_RS20575	0.70	+0.9
4,439,495	-		DZA65_RS20575	0.70	+1.3
4,439,495	-		DZA65_RS20575	0.70	+0.0
4,439,495	-		DZA65_RS20575	0.70	+0.7
4,439,495	-		DZA65_RS20575	0.70	-0.9
4,439,497	+				-0.7
4,439,497	+		DZA65_RS20575	0.70	+0.3
4,439,497	+		DZA65_RS20575	0.70	+0.3
4,439,498	-		DZA65_RS20575	0.70	+0.2
4,439,546	+		DZA65_RS20575	0.74	+0.1
4,439,546	+		DZA65_RS20575	0.74	-0.4
4,439,546	+		DZA65_RS20575	0.74	+0.4
4,439,546	+		DZA65_RS20575	0.74	-0.7
4,439,546	+		DZA65_RS20575	0.74	-0.4
4,439,546	+		DZA65_RS20575	0.74	-0.1
4,439,547	-		DZA65_RS20575	0.74	+0.3
4,439,547	-		DZA65_RS20575	0.74	+1.0
4,439,547	-		DZA65_RS20575	0.74	-0.6
4,439,547	-		DZA65_RS20575	0.74	-0.9
4,439,547	-		DZA65_RS20575	0.74	+0.8
4,439,547	-		DZA65_RS20575	0.74	+0.9
4,439,547	-		DZA65_RS20575	0.74	-1.7
4,439,547	-		DZA65_RS20575	0.74	-0.4
4,439,547	-		DZA65_RS20575	0.74	+0.3
4,439,547	-		DZA65_RS20575	0.74	-0.4
4,439,547	-		DZA65_RS20575	0.74	-0.1
4,439,549	+		DZA65_RS20575	0.74	+0.8
4,439,798	+				-1.6
4,439,799	-				+0.2
4,439,817	+				-0.1
4,439,818	-				-0.9
4,439,818	-				+0.1
4,439,836	-				-1.2
4,439,858	+				+0.8
4,439,858	+				-1.7
4,439,858	+				-0.1
4,439,858	+				+1.9
4,439,858	+				-0.5
4,439,858	+				+0.8
4,439,859	-				+0.9
4,439,859	-				+1.7
4,439,859	-				+0.9
4,439,875	+				-0.6
4,439,875	+				-1.9
4,439,875	+				+0.6
4,439,875	+				+0.5
4,439,875	+				-0.2
4,439,876	-				-0.9
4,439,876	-				+0.5
4,439,876	-				+2.8
4,439,876	-				-0.4
4,439,876	-				-1.6
4,439,892	+				-0.7
4,439,892	+				-0.2
4,439,892	+				-1.2
4,439,892	+				-2.7
4,439,892	+				-2.2
4,439,892	+				+0.3
4,439,892	+				-0.1
4,439,892	+				-1.0
4,439,892	+				-0.8
4,439,892	+				+0.2
4,439,893	-				-0.8
4,439,893	-				+1.8
4,439,893	-				-0.5
4,439,893	-				+1.0
4,439,893	-				+0.7
4,439,893	-				+0.6
4,439,893	-				-1.4
4,439,893	-				+0.3
4,439,893	-				-0.0
4,439,893	-				+0.4
4,439,893	-				+0.9
4,439,893	-				-0.5
4,439,993	+				-1.3
4,440,009	+				-2.1
4,440,263	+		DZA65_RS20580	0.32	+0.2
4,440,263	+		DZA65_RS20580	0.32	-0.4
4,440,263	+		DZA65_RS20580	0.32	+0.5
4,440,263	+		DZA65_RS20580	0.32	-0.9
4,440,263	+		DZA65_RS20580	0.32	-0.1
4,440,263	+		DZA65_RS20580	0.32	+0.1
4,440,263	+		DZA65_RS20580	0.32	+0.6
4,440,264	-		DZA65_RS20580	0.32	-0.5
4,440,264	-		DZA65_RS20580	0.32	-0.7
4,440,264	-		DZA65_RS20580	0.32	+0.9
4,440,264	-		DZA65_RS20580	0.32	+0.5
4,440,264	-		DZA65_RS20580	0.32	+1.3
4,440,264	-		DZA65_RS20580	0.32	-1.4
4,440,297	+		DZA65_RS20580	0.36	+0.4
4,440,297	+		DZA65_RS20580	0.36	-0.2
4,440,297	+		DZA65_RS20580	0.36	+1.3
4,440,298	-		DZA65_RS20580	0.36	+0.7
4,440,298	-		DZA65_RS20580	0.36	-1.0
4,440,298	-		DZA65_RS20580	0.36	-0.8
4,440,306	-		DZA65_RS20580	0.37	+0.3
4,440,306	-		DZA65_RS20580	0.37	+0.5
4,440,306	-		DZA65_RS20580	0.37	-1.1
4,440,306	-		DZA65_RS20580	0.37	-2.0
4,440,306	-		DZA65_RS20580	0.37	-1.4
4,440,306	-		DZA65_RS20580	0.37	+1.5
4,440,306	-		DZA65_RS20580	0.37	+0.7
4,440,306	-		DZA65_RS20580	0.37	+0.2
4,440,306	-		DZA65_RS20580	0.37	-0.1
4,440,357	+		DZA65_RS20580	0.43	+0.2
4,440,357	+		DZA65_RS20580	0.43	-0.1
4,440,357	+		DZA65_RS20580	0.43	-0.1
4,440,357	+		DZA65_RS20580	0.43	-0.4
4,440,357	+		DZA65_RS20580	0.43	-1.4
4,440,358	-		DZA65_RS20580	0.43	+0.1
4,440,358	-		DZA65_RS20580	0.43	+1.1
4,440,358	-		DZA65_RS20580	0.43	-1.7
4,440,358	-		DZA65_RS20580	0.43	+1.3
4,440,358	-		DZA65_RS20580	0.43	-0.5
4,440,358	-		DZA65_RS20580	0.43	-0.3
4,440,358	-		DZA65_RS20580	0.43	+0.5
4,440,358	-		DZA65_RS20580	0.43	+0.5
4,440,361	+		DZA65_RS20580	0.43	-0.4
4,440,361	+		DZA65_RS20580	0.43	-0.1
4,440,361	+		DZA65_RS20580	0.43	+0.6
4,440,361	+		DZA65_RS20580	0.43	-2.3
4,440,362	-		DZA65_RS20580	0.43	-0.7
4,440,362	-		DZA65_RS20580	0.43	+2.3
4,440,368	+		DZA65_RS20580	0.44	-1.3
4,440,368	+		DZA65_RS20580	0.44	-1.0
4,440,368	+		DZA65_RS20580	0.44	+0.4
4,440,368	+		DZA65_RS20580	0.44	-0.3
4,440,369	-		DZA65_RS20580	0.44	-0.2
4,440,369	-		DZA65_RS20580	0.44	+0.4
4,440,411	+		DZA65_RS20580	0.49	-0.2
4,440,412	-		DZA65_RS20580	0.49	-1.1
4,440,438	+		DZA65_RS20580	0.52	+0.3
4,440,453	+		DZA65_RS20580	0.54	+1.3
4,440,641	+		DZA65_RS20580	0.76	+0.1
4,440,642	-		DZA65_RS20580	0.76	+0.4
4,440,642	-		DZA65_RS20580	0.76	-1.7
4,440,642	-		DZA65_RS20580	0.76	+0.7
4,440,668	+		DZA65_RS20580	0.79	-1.5
4,440,668	+		DZA65_RS20580	0.79	+0.9
4,440,669	-		DZA65_RS20580	0.79	-0.4
4,440,769	+				+0.3
4,440,770	-				-0.7
4,440,770	-				+0.5
4,440,770	-				+1.1
4,440,770	-				-0.2
4,440,810	+				-2.3
4,440,811	-				+0.3
4,440,811	-				+0.6
4,440,811	-				+0.1
4,440,834	+				-0.3