Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS20355 and DZA65_RS20360 are separated by 102 nucleotides DZA65_RS20360 and DZA65_RS20365 are separated by 25 nucleotides DZA65_RS20365 and DZA65_RS20370 are separated by 60 nucleotides DZA65_RS20370 and DZA65_RS20375 are separated by 134 nucleotides
DZA65_RS20355: DZA65_RS20355 - Trk system potassium transporter TrkA, at 4,412,360 to 4,413,736
_RS20355
DZA65_RS20360: DZA65_RS20360 - large-conductance mechanosensitive channel protein MscL, at 4,413,839 to 4,414,264
_RS20360
DZA65_RS20365: DZA65_RS20365 - alternative ribosome-rescue factor A, at 4,414,290 to 4,414,493
_RS20365
DZA65_RS20370: DZA65_RS20370 - DUF1992 domain-containing protein, at 4,414,554 to 4,414,940
_RS20370
DZA65_RS20375: DZA65_RS20375 - 50S ribosomal protein L17, at 4,415,075 to 4,415,467
_RS20375
Position (kb) 4414
4415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4413.290 kb on - strand, within DZA65_RS20355 at 4413.290 kb on - strand, within DZA65_RS20355 at 4413.290 kb on - strand, within DZA65_RS20355 at 4413.401 kb on - strand, within DZA65_RS20355 at 4413.421 kb on + strand, within DZA65_RS20355 at 4413.734 kb on + strand at 4413.734 kb on + strand at 4413.786 kb on + strand at 4413.805 kb on + strand at 4413.811 kb on + strand at 4413.811 kb on + strand at 4413.811 kb on + strand at 4413.812 kb on - strand at 4413.823 kb on + strand at 4413.838 kb on + strand at 4413.838 kb on + strand at 4413.839 kb on - strand at 4413.839 kb on - strand at 4413.839 kb on - strand at 4413.839 kb on - strand at 4413.839 kb on - strand at 4413.839 kb on - strand at 4413.847 kb on + strand at 4413.847 kb on + strand at 4413.847 kb on + strand at 4413.847 kb on + strand at 4413.847 kb on + strand at 4413.847 kb on + strand at 4413.848 kb on - strand at 4413.848 kb on - strand at 4413.849 kb on + strand at 4413.849 kb on + strand at 4413.937 kb on - strand, within DZA65_RS20360 at 4413.958 kb on + strand, within DZA65_RS20360 at 4413.958 kb on + strand, within DZA65_RS20360 at 4413.958 kb on + strand, within DZA65_RS20360 at 4413.959 kb on - strand, within DZA65_RS20360 at 4413.959 kb on - strand, within DZA65_RS20360 at 4413.959 kb on - strand, within DZA65_RS20360 at 4413.959 kb on - strand, within DZA65_RS20360 at 4413.979 kb on - strand, within DZA65_RS20360 at 4413.979 kb on - strand, within DZA65_RS20360 at 4413.979 kb on - strand, within DZA65_RS20360 at 4413.979 kb on - strand, within DZA65_RS20360 at 4413.979 kb on - strand, within DZA65_RS20360 at 4414.039 kb on + strand, within DZA65_RS20360 at 4414.039 kb on + strand, within DZA65_RS20360 at 4414.039 kb on + strand, within DZA65_RS20360 at 4414.039 kb on + strand, within DZA65_RS20360 at 4414.040 kb on - strand, within DZA65_RS20360 at 4414.040 kb on - strand, within DZA65_RS20360 at 4414.040 kb on - strand at 4414.041 kb on + strand, within DZA65_RS20360 at 4414.042 kb on - strand, within DZA65_RS20360 at 4414.042 kb on - strand, within DZA65_RS20360 at 4414.042 kb on - strand, within DZA65_RS20360 at 4414.054 kb on + strand, within DZA65_RS20360 at 4414.057 kb on + strand, within DZA65_RS20360 at 4414.057 kb on + strand, within DZA65_RS20360 at 4414.057 kb on + strand, within DZA65_RS20360 at 4414.057 kb on + strand, within DZA65_RS20360 at 4414.057 kb on + strand, within DZA65_RS20360 at 4414.057 kb on + strand, within DZA65_RS20360 at 4414.058 kb on - strand, within DZA65_RS20360 at 4414.058 kb on - strand, within DZA65_RS20360 at 4414.058 kb on - strand, within DZA65_RS20360 at 4414.061 kb on + strand, within DZA65_RS20360 at 4414.061 kb on + strand, within DZA65_RS20360 at 4414.062 kb on - strand, within DZA65_RS20360 at 4414.062 kb on - strand, within DZA65_RS20360 at 4414.081 kb on + strand, within DZA65_RS20360 at 4414.082 kb on - strand, within DZA65_RS20360 at 4414.093 kb on + strand, within DZA65_RS20360 at 4414.093 kb on + strand, within DZA65_RS20360 at 4414.093 kb on + strand, within DZA65_RS20360 at 4414.094 kb on - strand, within DZA65_RS20360 at 4414.094 kb on - strand, within DZA65_RS20360 at 4414.094 kb on - strand, within DZA65_RS20360 at 4414.131 kb on + strand, within DZA65_RS20360 at 4414.138 kb on + strand, within DZA65_RS20360 at 4414.138 kb on + strand, within DZA65_RS20360 at 4414.139 kb on - strand, within DZA65_RS20360 at 4414.143 kb on + strand, within DZA65_RS20360 at 4414.143 kb on + strand at 4414.143 kb on + strand, within DZA65_RS20360 at 4414.143 kb on + strand, within DZA65_RS20360 at 4414.143 kb on + strand, within DZA65_RS20360 at 4414.144 kb on - strand, within DZA65_RS20360 at 4414.144 kb on - strand, within DZA65_RS20360 at 4414.151 kb on - strand, within DZA65_RS20360 at 4414.204 kb on - strand, within DZA65_RS20360 at 4414.283 kb on + strand at 4414.283 kb on + strand at 4414.283 kb on + strand at 4414.283 kb on + strand at 4414.283 kb on + strand at 4414.283 kb on + strand at 4414.284 kb on - strand at 4414.284 kb on - strand at 4414.284 kb on - strand at 4414.305 kb on + strand at 4414.305 kb on + strand at 4414.305 kb on + strand at 4414.306 kb on - strand at 4414.306 kb on - strand at 4414.322 kb on + strand, within DZA65_RS20365 at 4414.378 kb on + strand, within DZA65_RS20365 at 4414.388 kb on + strand, within DZA65_RS20365 at 4414.389 kb on - strand, within DZA65_RS20365 at 4414.454 kb on + strand, within DZA65_RS20365 at 4414.461 kb on + strand, within DZA65_RS20365 at 4414.461 kb on + strand, within DZA65_RS20365 at 4414.461 kb on + strand, within DZA65_RS20365 at 4414.462 kb on - strand, within DZA65_RS20365 at 4414.462 kb on - strand, within DZA65_RS20365 at 4414.475 kb on + strand at 4414.493 kb on + strand at 4414.493 kb on + strand at 4414.493 kb on + strand at 4414.493 kb on + strand at 4414.493 kb on + strand at 4414.494 kb on - strand at 4414.494 kb on - strand at 4414.494 kb on - strand at 4414.494 kb on - strand at 4414.499 kb on + strand at 4414.515 kb on + strand at 4414.515 kb on + strand at 4414.516 kb on - strand at 4414.517 kb on + strand at 4414.517 kb on + strand at 4414.517 kb on + strand at 4414.517 kb on + strand at 4414.517 kb on + strand at 4414.517 kb on + strand at 4414.517 kb on + strand at 4414.517 kb on + strand at 4414.517 kb on + strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.518 kb on - strand at 4414.543 kb on + strand at 4414.543 kb on + strand at 4414.565 kb on + strand at 4414.574 kb on + strand at 4414.574 kb on + strand at 4414.574 kb on + strand at 4414.574 kb on + strand at 4414.575 kb on - strand at 4414.575 kb on - strand at 4414.584 kb on + strand at 4414.585 kb on - strand at 4414.596 kb on + strand, within DZA65_RS20370 at 4414.596 kb on + strand, within DZA65_RS20370 at 4414.596 kb on + strand, within DZA65_RS20370 at 4414.597 kb on - strand, within DZA65_RS20370 at 4414.597 kb on - strand, within DZA65_RS20370 at 4414.609 kb on + strand, within DZA65_RS20370 at 4414.609 kb on + strand, within DZA65_RS20370 at 4414.610 kb on - strand, within DZA65_RS20370 at 4414.610 kb on - strand, within DZA65_RS20370 at 4414.656 kb on + strand, within DZA65_RS20370 at 4414.656 kb on + strand, within DZA65_RS20370 at 4414.656 kb on + strand, within DZA65_RS20370 at 4414.657 kb on - strand, within DZA65_RS20370 at 4414.657 kb on - strand, within DZA65_RS20370 at 4414.657 kb on - strand, within DZA65_RS20370 at 4414.683 kb on + strand, within DZA65_RS20370 at 4414.693 kb on + strand, within DZA65_RS20370 at 4414.693 kb on + strand, within DZA65_RS20370 at 4414.693 kb on + strand, within DZA65_RS20370 at 4414.693 kb on + strand, within DZA65_RS20370 at 4414.693 kb on + strand, within DZA65_RS20370 at 4414.694 kb on - strand, within DZA65_RS20370 at 4414.694 kb on - strand, within DZA65_RS20370 at 4414.801 kb on + strand, within DZA65_RS20370 at 4414.802 kb on - strand, within DZA65_RS20370 at 4414.812 kb on + strand, within DZA65_RS20370 at 4414.812 kb on + strand, within DZA65_RS20370 at 4414.812 kb on + strand, within DZA65_RS20370 at 4414.813 kb on - strand, within DZA65_RS20370 at 4414.813 kb on - strand, within DZA65_RS20370 at 4414.813 kb on - strand, within DZA65_RS20370 at 4414.813 kb on - strand, within DZA65_RS20370 at 4414.832 kb on + strand, within DZA65_RS20370 at 4414.908 kb on - strand at 4414.931 kb on + strand at 4414.931 kb on + strand at 4414.932 kb on - strand at 4414.940 kb on + strand at 4414.940 kb on + strand at 4414.940 kb on + strand at 4414.940 kb on + strand at 4414.940 kb on + strand at 4414.940 kb on + strand at 4414.940 kb on + strand at 4414.941 kb on - strand at 4414.941 kb on - strand at 4414.941 kb on - strand at 4414.941 kb on - strand at 4414.969 kb on + strand at 4414.969 kb on + strand at 4414.969 kb on + strand at 4414.969 kb on + strand at 4414.970 kb on - strand at 4414.970 kb on - strand at 4414.970 kb on - strand at 4414.970 kb on - strand at 4414.970 kb on - strand at 4414.970 kb on - strand at 4414.970 kb on - strand at 4414.970 kb on - strand at 4414.970 kb on - strand at 4414.970 kb on - strand at 4414.970 kb on - strand at 4414.976 kb on + strand at 4414.976 kb on + strand at 4414.977 kb on - strand at 4414.977 kb on - strand at 4414.977 kb on - strand at 4415.005 kb on + strand at 4415.005 kb on + strand at 4415.005 kb on + strand at 4415.006 kb on - strand at 4415.006 kb on - strand at 4415.006 kb on - strand at 4415.006 kb on - strand at 4415.020 kb on + strand at 4415.021 kb on - strand at 4415.021 kb on - strand at 4415.021 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 4,413,290 - DZA65_RS20355 0.68 -0.7 4,413,290 - DZA65_RS20355 0.68 +3.9 4,413,290 - DZA65_RS20355 0.68 -1.1 4,413,401 - DZA65_RS20355 0.76 +1.5 4,413,421 + DZA65_RS20355 0.77 +0.3 4,413,734 + -1.8 4,413,734 + -0.9 4,413,786 + +0.2 4,413,805 + -0.1 4,413,811 + -0.4 4,413,811 + -1.7 4,413,811 + -1.4 4,413,812 - +0.1 4,413,823 + +1.0 4,413,838 + +0.1 4,413,838 + +0.1 4,413,839 - +0.2 4,413,839 - +0.2 4,413,839 - -0.0 4,413,839 - +0.0 4,413,839 - -1.4 4,413,839 - +0.5 4,413,847 + -1.0 4,413,847 + +1.0 4,413,847 + +0.9 4,413,847 + -1.3 4,413,847 + -0.6 4,413,847 + -0.7 4,413,848 - -0.1 4,413,848 - +0.3 4,413,849 + -0.7 4,413,849 + -0.0 4,413,937 - DZA65_RS20360 0.23 -0.1 4,413,958 + DZA65_RS20360 0.28 -0.7 4,413,958 + DZA65_RS20360 0.28 +0.8 4,413,958 + DZA65_RS20360 0.28 +0.4 4,413,959 - DZA65_RS20360 0.28 -0.3 4,413,959 - DZA65_RS20360 0.28 +0.4 4,413,959 - DZA65_RS20360 0.28 +0.2 4,413,959 - DZA65_RS20360 0.28 +0.4 4,413,979 - DZA65_RS20360 0.33 +0.0 4,413,979 - DZA65_RS20360 0.33 -0.5 4,413,979 - DZA65_RS20360 0.33 -0.4 4,413,979 - DZA65_RS20360 0.33 -0.2 4,413,979 - DZA65_RS20360 0.33 +0.4 4,414,039 + DZA65_RS20360 0.47 +0.5 4,414,039 + DZA65_RS20360 0.47 +0.5 4,414,039 + DZA65_RS20360 0.47 -0.3 4,414,039 + DZA65_RS20360 0.47 -0.4 4,414,040 - DZA65_RS20360 0.47 -2.0 4,414,040 - DZA65_RS20360 0.47 -0.5 4,414,040 - -0.1 4,414,041 + DZA65_RS20360 0.47 +0.4 4,414,042 - DZA65_RS20360 0.48 +0.0 4,414,042 - DZA65_RS20360 0.48 +0.3 4,414,042 - DZA65_RS20360 0.48 +0.7 4,414,054 + DZA65_RS20360 0.50 -1.1 4,414,057 + DZA65_RS20360 0.51 -1.4 4,414,057 + DZA65_RS20360 0.51 +0.1 4,414,057 + DZA65_RS20360 0.51 -0.9 4,414,057 + DZA65_RS20360 0.51 +0.6 4,414,057 + DZA65_RS20360 0.51 -0.6 4,414,057 + DZA65_RS20360 0.51 +0.1 4,414,058 - DZA65_RS20360 0.51 +0.5 4,414,058 - DZA65_RS20360 0.51 -0.1 4,414,058 - DZA65_RS20360 0.51 +2.5 4,414,061 + DZA65_RS20360 0.52 -0.9 4,414,061 + DZA65_RS20360 0.52 -0.1 4,414,062 - DZA65_RS20360 0.52 -1.1 4,414,062 - DZA65_RS20360 0.52 +0.7 4,414,081 + DZA65_RS20360 0.57 +0.1 4,414,082 - DZA65_RS20360 0.57 -0.3 4,414,093 + DZA65_RS20360 0.60 +0.3 4,414,093 + DZA65_RS20360 0.60 -0.4 4,414,093 + DZA65_RS20360 0.60 -0.5 4,414,094 - DZA65_RS20360 0.60 +0.7 4,414,094 - DZA65_RS20360 0.60 -0.2 4,414,094 - DZA65_RS20360 0.60 -0.7 4,414,131 + DZA65_RS20360 0.69 +0.2 4,414,138 + DZA65_RS20360 0.70 -0.1 4,414,138 + DZA65_RS20360 0.70 -0.4 4,414,139 - DZA65_RS20360 0.70 -0.5 4,414,143 + DZA65_RS20360 0.71 -0.1 4,414,143 + +1.9 4,414,143 + DZA65_RS20360 0.71 -0.6 4,414,143 + DZA65_RS20360 0.71 +0.5 4,414,143 + DZA65_RS20360 0.71 +1.0 4,414,144 - DZA65_RS20360 0.72 +2.9 4,414,144 - DZA65_RS20360 0.72 +1.7 4,414,151 - DZA65_RS20360 0.73 -0.3 4,414,204 - DZA65_RS20360 0.86 -0.0 4,414,283 + -0.4 4,414,283 + -0.3 4,414,283 + +0.7 4,414,283 + +0.9 4,414,283 + +1.2 4,414,283 + +2.2 4,414,284 - +2.7 4,414,284 - +0.3 4,414,284 - +1.3 4,414,305 + -0.1 4,414,305 + +0.0 4,414,305 + +0.9 4,414,306 - -0.8 4,414,306 - +3.2 4,414,322 + DZA65_RS20365 0.16 +0.2 4,414,378 + DZA65_RS20365 0.43 +0.9 4,414,388 + DZA65_RS20365 0.48 -1.6 4,414,389 - DZA65_RS20365 0.49 -0.7 4,414,454 + DZA65_RS20365 0.80 +0.3 4,414,461 + DZA65_RS20365 0.84 +1.0 4,414,461 + DZA65_RS20365 0.84 +0.0 4,414,461 + DZA65_RS20365 0.84 +0.2 4,414,462 - DZA65_RS20365 0.84 +1.2 4,414,462 - DZA65_RS20365 0.84 +1.2 4,414,475 + -0.8 4,414,493 + +0.9 4,414,493 + +0.7 4,414,493 + +1.2 4,414,493 + +0.7 4,414,493 + -0.7 4,414,494 - +0.1 4,414,494 - -1.7 4,414,494 - -0.1 4,414,494 - +1.0 4,414,499 + +1.4 4,414,515 + -0.9 4,414,515 + -1.4 4,414,516 - -0.0 4,414,517 + +1.8 4,414,517 + +0.2 4,414,517 + +0.6 4,414,517 + +0.5 4,414,517 + +1.8 4,414,517 + +0.2 4,414,517 + +0.6 4,414,517 + -0.4 4,414,517 + -1.6 4,414,518 - -1.7 4,414,518 - +1.5 4,414,518 - +0.1 4,414,518 - -0.1 4,414,518 - -0.0 4,414,518 - -1.6 4,414,518 - +0.2 4,414,518 - +0.8 4,414,518 - +0.5 4,414,518 - +1.5 4,414,518 - -0.7 4,414,518 - +2.4 4,414,518 - +0.9 4,414,518 - +0.7 4,414,518 - +0.3 4,414,518 - +0.7 4,414,518 - -0.0 4,414,518 - +1.3 4,414,543 + +0.2 4,414,543 + -1.7 4,414,565 + -0.4 4,414,574 + +1.6 4,414,574 + -1.1 4,414,574 + +0.5 4,414,574 + +0.9 4,414,575 - -1.1 4,414,575 - -0.4 4,414,584 + +2.2 4,414,585 - -2.1 4,414,596 + DZA65_RS20370 0.11 -0.5 4,414,596 + DZA65_RS20370 0.11 -0.0 4,414,596 + DZA65_RS20370 0.11 -2.4 4,414,597 - DZA65_RS20370 0.11 +0.8 4,414,597 - DZA65_RS20370 0.11 -1.6 4,414,609 + DZA65_RS20370 0.14 +0.2 4,414,609 + DZA65_RS20370 0.14 +1.4 4,414,610 - DZA65_RS20370 0.14 +1.1 4,414,610 - DZA65_RS20370 0.14 -0.6 4,414,656 + DZA65_RS20370 0.26 -0.5 4,414,656 + DZA65_RS20370 0.26 +0.7 4,414,656 + DZA65_RS20370 0.26 -2.9 4,414,657 - DZA65_RS20370 0.27 -0.9 4,414,657 - DZA65_RS20370 0.27 +0.5 4,414,657 - DZA65_RS20370 0.27 +0.4 4,414,683 + DZA65_RS20370 0.33 +0.1 4,414,693 + DZA65_RS20370 0.36 -0.8 4,414,693 + DZA65_RS20370 0.36 -0.7 4,414,693 + DZA65_RS20370 0.36 +0.1 4,414,693 + DZA65_RS20370 0.36 -1.1 4,414,693 + DZA65_RS20370 0.36 +1.5 4,414,694 - DZA65_RS20370 0.36 -0.1 4,414,694 - DZA65_RS20370 0.36 +0.8 4,414,801 + DZA65_RS20370 0.64 -2.4 4,414,802 - DZA65_RS20370 0.64 +1.1 4,414,812 + DZA65_RS20370 0.67 +1.6 4,414,812 + DZA65_RS20370 0.67 +0.1 4,414,812 + DZA65_RS20370 0.67 -1.4 4,414,813 - DZA65_RS20370 0.67 +0.4 4,414,813 - DZA65_RS20370 0.67 -0.5 4,414,813 - DZA65_RS20370 0.67 -0.2 4,414,813 - DZA65_RS20370 0.67 +0.8 4,414,832 + DZA65_RS20370 0.72 -1.9 4,414,908 - -0.3 4,414,931 + +0.2 4,414,931 + -0.4 4,414,932 - -1.9 4,414,940 + +0.9 4,414,940 + -0.4 4,414,940 + -0.4 4,414,940 + +0.9 4,414,940 + -0.8 4,414,940 + -1.9 4,414,940 + -1.1 4,414,941 - +0.5 4,414,941 - -1.1 4,414,941 - -0.6 4,414,941 - -0.1 4,414,969 + -2.6 4,414,969 + -1.0 4,414,969 + +2.3 4,414,969 + -1.3 4,414,970 - -1.7 4,414,970 - +0.9 4,414,970 - -1.1 4,414,970 - -1.6 4,414,970 - +0.5 4,414,970 - +0.2 4,414,970 - -0.6 4,414,970 - +0.0 4,414,970 - +0.7 4,414,970 - -1.3 4,414,970 - -0.7 4,414,976 + +1.7 4,414,976 + -2.3 4,414,977 - +0.2 4,414,977 - +0.5 4,414,977 - -0.1 4,415,005 + -0.2 4,415,005 + -0.2 4,415,005 + -0.4 4,415,006 - +0.2 4,415,006 - +0.3 4,415,006 - +0.3 4,415,006 - +0.3 4,415,020 + -1.8 4,415,021 - +1.2 4,415,021 - -0.6 4,415,021 - +0.5
Or see this region's nucleotide sequence